Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.46900 * 2 1 4 4 C 1.34231 * 116.99866 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99681 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00043 * 180.02562 * 4 3 2 7 7 C 1.52998 * 115.54796 * 325.57609 * 6 4 3 8 8 N 1.46906 * 109.47020 * 34.33262 * 7 6 4 9 9 C 1.46902 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46622 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47223 * 304.99930 * 10 9 8 12 12 C 1.52993 * 109.47083 * 65.00316 * 10 9 8 13 13 C 1.53008 * 109.46744 * 185.00131 * 10 9 8 14 14 C 1.50694 * 109.46650 * 175.00063 * 13 10 9 15 15 H 1.08003 * 120.00498 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99879 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99776 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00416 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46854 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47323 * 120.00024 * 18 16 14 21 21 H 1.48495 * 109.47285 * 240.00104 * 18 16 14 22 22 C 1.52995 * 117.51892 * 111.28171 * 6 4 3 23 23 C 1.52993 * 117.49718 * 179.91070 * 6 4 3 24 24 H 1.08995 * 109.46807 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46678 * 300.00182 * 1 2 3 26 26 H 1.08997 * 109.47158 * 60.00366 * 1 2 3 27 27 H 1.08997 * 109.46876 * 239.99552 * 2 1 3 28 28 H 1.08997 * 109.47158 * 119.99634 * 2 1 3 29 29 H 1.09002 * 109.47142 * 274.33472 * 7 6 4 30 30 H 1.09000 * 109.46991 * 154.33217 * 7 6 4 31 31 H 1.00896 * 111.00309 * 56.04370 * 8 7 6 32 32 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 33 33 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 34 34 H 1.09001 * 109.47025 * 180.02562 * 12 10 9 35 35 H 1.09007 * 109.47182 * 299.99588 * 12 10 9 36 36 H 1.08994 * 109.47490 * 59.99490 * 12 10 9 37 37 H 1.09005 * 109.46614 * 294.99810 * 13 10 9 38 38 H 1.08993 * 109.46898 * 55.00161 * 13 10 9 39 39 H 0.97005 * 119.99959 * 179.97438 * 17 16 14 40 40 H 1.09007 * 117.49637 * 214.97268 * 22 6 4 41 41 H 1.09000 * 117.50037 * 359.97438 * 22 6 4 42 42 H 1.09003 * 117.50491 * 359.97220 * 23 6 4 43 43 H 1.09000 * 117.49804 * 144.97589 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.1204 3.9829 -0.7793 8 7 1.6859 3.6880 -0.6630 9 6 0.8844 4.6739 -1.4002 10 6 -0.6005 4.3340 -1.2565 11 1 -0.7710 3.3068 -1.5789 12 6 -1.0189 4.4853 0.2073 13 6 -1.4276 5.2848 -2.1243 14 6 -2.8766 4.8735 -2.0793 15 1 -3.1776 4.0192 -1.4910 16 6 -3.8183 5.5879 -2.7891 17 7 -3.4519 6.6279 -3.5059 18 14 -5.6145 5.0777 -2.7340 19 1 -5.7636 3.8845 -1.8627 20 1 -6.4294 6.1931 -2.1889 21 1 -6.0784 4.7504 -4.1062 22 6 4.6466 3.4017 1.2643 23 6 5.4448 3.0715 0.0015 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.4129 3.9561 -1.8290 30 1 3.3219 4.9733 -0.3711 31 1 1.4032 3.6432 0.3045 32 1 1.0705 5.6688 -0.9960 33 1 1.1613 4.6524 -2.4543 34 1 -2.0767 4.2427 0.3098 35 1 -0.4297 3.8080 0.8255 36 1 -0.8484 5.5124 0.5297 37 1 -1.3267 6.3022 -1.7462 38 1 -1.0696 5.2421 -3.1528 39 1 -4.1143 7.1303 -4.0056 40 1 4.5539 4.4521 1.5409 41 1 4.7073 2.7001 2.0962 42 1 6.0309 2.1525 0.0025 43 1 5.8773 3.9044 -0.5530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602619704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -75.385645 kcal Electronic energy + Delta-G solvation = -21290.617319 eV Core-core repulsion = 18143.333194 eV Total energy + Delta-G solvation = -3147.284125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62684 -37.97587 -36.76083 -35.89185 -33.51559 -31.83410 -31.44419 -27.47910 -26.55545 -24.90738 -24.11598 -22.79509 -22.37048 -21.96279 -19.83766 -18.91637 -17.46818 -16.57690 -16.37620 -16.34942 -15.32335 -14.80518 -14.57737 -14.13447 -13.99450 -13.77979 -13.45406 -13.23721 -12.67846 -12.40572 -12.23582 -12.15685 -11.86976 -11.78971 -11.66428 -11.40620 -11.27826 -10.88877 -10.84045 -10.73596 -10.44932 -10.34690 -10.30015 -10.24519 -10.11677 -9.67186 -9.11064 -8.92299 -8.31346 -8.01345 -5.96024 -3.96777 2.14967 2.72279 3.32848 3.40583 3.44313 3.50979 4.10490 4.49124 4.52091 4.61129 4.70614 4.92181 5.03239 5.11658 5.30860 5.33336 5.40042 5.40877 5.52996 5.57065 5.70319 5.81298 5.82388 5.85260 5.91317 5.93423 6.11096 6.20750 6.30277 6.52229 6.61456 6.61758 6.99288 7.15040 7.22065 7.41772 7.72425 7.75720 7.89618 7.93168 8.04945 8.49020 9.10009 9.66578 11.15592 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.004185 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.849749 B = 6689.741146 C = 7493.680751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.308 6.308 4 C 0.509 3.491 5 O -0.527 6.527 6 C -0.140 4.140 7 C 0.097 3.903 8 N -0.673 5.673 9 C 0.065 3.935 10 C -0.081 4.081 11 H 0.066 0.934 12 C -0.133 4.133 13 C 0.027 3.973 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.150 4.150 23 C -0.140 4.140 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.343 0.657 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.013 0.987 38 H 0.014 0.986 39 H 0.258 0.742 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.788 -7.871 9.148 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.222 6.222 4 C 0.352 3.648 5 O -0.417 6.417 6 C -0.141 4.141 7 C -0.033 4.033 8 N -0.306 5.306 9 C -0.063 4.063 10 C -0.100 4.100 11 H 0.084 0.916 12 C -0.190 4.190 13 C -0.010 4.010 14 C -0.548 4.548 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.187 4.187 23 C -0.177 4.177 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.163 0.837 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.875 -8.500 8.521 19.134 hybrid contribution -0.950 0.449 0.453 1.145 sum 13.924 -8.050 8.974 18.418 Atomic orbital electron populations 1.21764 0.92277 1.02354 1.04367 1.23001 0.95785 0.80928 1.01579 1.86793 1.22511 1.30559 1.82333 1.22146 0.81293 0.89842 0.71486 1.90624 1.61190 1.42701 1.47198 1.21204 0.95466 0.92423 1.05052 1.21442 0.89200 0.93261 0.99364 1.60523 1.00820 1.50695 1.18541 1.22136 0.94694 0.91614 0.97899 1.21178 0.91385 1.01340 0.96058 0.91602 1.21727 1.01570 0.99414 0.96313 1.19121 0.93896 0.93853 0.94175 1.21278 0.92506 1.12945 1.28118 0.92524 1.25019 0.98810 0.95152 0.95588 1.69980 1.33749 1.18960 1.31042 0.86594 0.85556 0.78475 0.77725 1.19751 1.21164 1.21122 1.23196 1.01459 1.02834 0.91199 1.23107 0.90209 1.04285 1.00090 0.90897 0.91536 0.90613 0.91755 0.92171 0.90354 0.94363 0.83730 0.96030 0.91636 0.92029 0.94795 0.94218 0.96834 0.96739 0.93202 0.87275 0.88164 0.87229 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 37.16 0.38 -1.27 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.31 -4.30 7.48 -39.26 -0.29 -4.59 16 4 C 0.51 7.10 7.48 36.01 0.27 7.36 16 5 O -0.53 -8.34 16.01 -18.75 -0.30 -8.64 16 6 C -0.14 -1.58 2.46 -155.67 -0.38 -1.96 16 7 C 0.10 1.17 5.82 -3.82 -0.02 1.14 16 8 N -0.67 -9.69 4.30 -113.77 -0.49 -10.18 16 9 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 10 C -0.08 -1.62 2.55 -90.62 -0.23 -1.85 16 11 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 12 C -0.13 -2.43 8.77 37.15 0.33 -2.10 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 14 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 15 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.15 -1.31 9.88 -26.74 -0.26 -1.58 16 23 C -0.14 -1.26 9.76 -26.74 -0.26 -1.52 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.42 7.90 -51.93 -0.41 0.01 16 31 H 0.34 4.83 6.45 -39.29 -0.25 4.58 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 35 H 0.03 0.52 6.68 -51.92 -0.35 0.18 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.11 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 1.07 7.67 -51.93 -0.40 0.67 16 43 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -31.08 351.62 -8.16 -39.24 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.61 Total: 0.62 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.48 Total: -12.14 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.25 Total: -36.36 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.59 Total: -13.24 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.08 -8.16 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602619704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.144 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds