Wall clock time and date at job start Mon Mar 30 2020 01:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.46900 * 2 1 4 4 C 1.34231 * 116.99866 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99681 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00043 * 180.02562 * 4 3 2 7 7 C 1.52998 * 115.54796 * 325.57609 * 6 4 3 8 8 N 1.46906 * 109.47020 * 34.33262 * 7 6 4 9 9 C 1.46902 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.46622 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47223 * 304.99930 * 10 9 8 12 12 C 1.52993 * 109.47083 * 65.00316 * 10 9 8 13 13 C 1.53008 * 109.46744 * 185.00131 * 10 9 8 14 14 C 1.50694 * 109.46650 * 175.00063 * 13 10 9 15 15 H 1.08003 * 120.00498 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99879 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99776 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00416 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46854 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47323 * 120.00024 * 18 16 14 21 21 H 1.48495 * 109.47285 * 240.00104 * 18 16 14 22 22 C 1.52995 * 117.51892 * 111.28171 * 6 4 3 23 23 C 1.52993 * 117.49718 * 179.91070 * 6 4 3 24 24 H 1.08995 * 109.46807 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46678 * 300.00182 * 1 2 3 26 26 H 1.08997 * 109.47158 * 60.00366 * 1 2 3 27 27 H 1.08997 * 109.46876 * 239.99552 * 2 1 3 28 28 H 1.08997 * 109.47158 * 119.99634 * 2 1 3 29 29 H 1.09002 * 109.47142 * 274.33472 * 7 6 4 30 30 H 1.09000 * 109.46991 * 154.33217 * 7 6 4 31 31 H 1.00896 * 111.00309 * 56.04370 * 8 7 6 32 32 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 33 33 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 34 34 H 1.09001 * 109.47025 * 180.02562 * 12 10 9 35 35 H 1.09007 * 109.47182 * 299.99588 * 12 10 9 36 36 H 1.08994 * 109.47490 * 59.99490 * 12 10 9 37 37 H 1.09005 * 109.46614 * 294.99810 * 13 10 9 38 38 H 1.08993 * 109.46898 * 55.00161 * 13 10 9 39 39 H 0.97005 * 119.99959 * 179.97438 * 17 16 14 40 40 H 1.09007 * 117.49637 * 214.97268 * 22 6 4 41 41 H 1.09000 * 117.50037 * 359.97438 * 22 6 4 42 42 H 1.09003 * 117.50491 * 359.97220 * 23 6 4 43 43 H 1.09000 * 117.49804 * 144.97589 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.1204 3.9829 -0.7793 8 7 1.6859 3.6880 -0.6630 9 6 0.8844 4.6739 -1.4002 10 6 -0.6005 4.3340 -1.2565 11 1 -0.7710 3.3068 -1.5789 12 6 -1.0189 4.4853 0.2073 13 6 -1.4276 5.2848 -2.1243 14 6 -2.8766 4.8735 -2.0793 15 1 -3.1776 4.0192 -1.4910 16 6 -3.8183 5.5879 -2.7891 17 7 -3.4519 6.6279 -3.5059 18 14 -5.6145 5.0777 -2.7340 19 1 -5.7636 3.8845 -1.8627 20 1 -6.4294 6.1931 -2.1889 21 1 -6.0784 4.7504 -4.1062 22 6 4.6466 3.4017 1.2643 23 6 5.4448 3.0715 0.0015 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.4129 3.9561 -1.8290 30 1 3.3219 4.9733 -0.3711 31 1 1.4032 3.6432 0.3045 32 1 1.0705 5.6688 -0.9960 33 1 1.1613 4.6524 -2.4543 34 1 -2.0767 4.2427 0.3098 35 1 -0.4297 3.8080 0.8255 36 1 -0.8484 5.5124 0.5297 37 1 -1.3267 6.3022 -1.7462 38 1 -1.0696 5.2421 -3.1528 39 1 -4.1143 7.1303 -4.0056 40 1 4.5539 4.4521 1.5409 41 1 4.7073 2.7001 2.0962 42 1 6.0309 2.1525 0.0025 43 1 5.8773 3.9044 -0.5530 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602619704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:18 Heat of formation + Delta-G solvation = -92.491363 kcal Electronic energy + Delta-G solvation = -21291.359079 eV Core-core repulsion = 18143.333194 eV Total energy + Delta-G solvation = -3148.025885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63622 -38.95436 -38.05411 -37.09459 -35.19414 -33.55741 -32.44724 -29.14492 -27.98210 -26.25359 -25.37033 -23.88182 -23.38050 -23.19752 -20.91906 -20.44633 -18.63272 -18.33869 -17.57142 -17.39980 -16.62355 -16.45371 -15.70710 -15.37765 -15.09870 -14.97295 -14.71408 -14.55282 -14.01268 -13.80153 -13.53554 -13.31277 -13.26864 -13.06198 -12.79508 -12.72968 -12.58773 -12.42767 -12.29277 -12.18493 -11.90256 -11.65486 -11.45587 -11.39822 -11.34808 -11.10127 -10.99702 -10.82854 -10.50768 -9.16117 -8.14670 -6.23014 1.14827 1.41228 1.42079 1.54674 1.79869 2.44185 2.71177 3.13890 3.19198 3.70015 3.81222 3.84949 3.94328 4.08904 4.17982 4.30360 4.33264 4.40638 4.53101 4.62447 4.68973 4.69858 4.82361 4.85731 4.92086 4.95696 4.98759 5.01081 5.12409 5.16198 5.26037 5.31780 5.45660 5.54396 5.60725 5.62088 5.86404 5.94656 6.16666 6.36341 6.63287 6.88363 6.93600 7.45160 8.97631 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.004185 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.849749 B = 6689.741146 C = 7493.680751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 O -0.319 6.319 4 C 0.503 3.497 5 O -0.553 6.553 6 C -0.160 4.160 7 C 0.101 3.899 8 N -0.675 5.675 9 C 0.079 3.921 10 C -0.071 4.071 11 H 0.054 0.946 12 C -0.123 4.123 13 C 0.032 3.968 14 C -0.524 4.524 15 H 0.061 0.939 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.958 3.042 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.282 1.282 22 C -0.132 4.132 23 C -0.130 4.130 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.347 0.653 32 H 0.026 0.974 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.039 0.961 37 H -0.010 1.010 38 H -0.016 1.016 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.173 -8.237 10.629 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 O -0.233 6.233 4 C 0.349 3.651 5 O -0.446 6.446 6 C -0.161 4.161 7 C -0.029 4.029 8 N -0.308 5.308 9 C -0.050 4.050 10 C -0.090 4.090 11 H 0.073 0.927 12 C -0.181 4.181 13 C -0.005 4.005 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.784 3.216 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.168 4.168 23 C -0.167 4.167 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.008 0.992 38 H 0.003 0.997 39 H 0.070 0.930 40 H 0.149 0.851 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.266 -8.875 10.017 20.301 hybrid contribution -1.021 0.539 -0.016 1.154 sum 14.245 -8.336 10.001 19.298 Atomic orbital electron populations 1.21743 0.91432 1.03580 1.03328 1.23129 0.96404 0.80415 1.01750 1.86786 1.22796 1.31505 1.82209 1.22706 0.81058 0.90743 0.70613 1.90604 1.61587 1.43781 1.48590 1.21206 0.96640 0.90735 1.07565 1.21445 0.87421 0.94477 0.99514 1.60415 1.02128 1.49771 1.18518 1.21815 0.92955 0.92419 0.97811 1.20959 0.92856 0.98997 0.96189 0.92714 1.21612 1.00875 1.00262 0.95304 1.19015 0.94138 0.93901 0.93461 1.21676 0.93788 1.12921 1.27859 0.92092 1.25924 1.03668 0.95123 0.95207 1.70111 1.35393 1.20228 1.32021 0.85494 0.79725 0.78498 0.77930 1.18488 1.20595 1.20749 1.23336 0.99119 1.03990 0.90387 1.23217 0.88383 1.04679 1.00437 0.88638 0.91386 0.92630 0.92347 0.91240 0.90891 0.92360 0.83281 0.95632 0.92786 0.93838 0.91623 0.94138 0.99164 0.99713 0.93048 0.85082 0.88077 0.88117 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 10.29 71.98 0.74 -2.29 16 2 C 0.06 1.34 6.19 71.98 0.45 1.79 16 3 O -0.32 -8.64 7.48 -51.43 -0.38 -9.03 16 4 C 0.50 13.56 7.48 71.24 0.53 14.10 16 5 O -0.55 -17.26 16.01 21.95 0.35 -16.90 16 6 C -0.16 -3.29 2.46 -52.93 -0.13 -3.42 16 7 C 0.10 2.21 5.82 86.30 0.50 2.71 16 8 N -0.68 -18.48 4.30 -513.86 -2.21 -20.69 16 9 C 0.08 2.63 5.14 86.31 0.44 3.08 16 10 C -0.07 -2.85 2.55 -10.79 -0.03 -2.88 16 11 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 12 C -0.12 -4.37 8.77 71.98 0.63 -3.74 16 13 C 0.03 1.69 4.45 29.85 0.13 1.82 16 14 C -0.52 -29.47 8.41 25.60 0.22 -29.25 16 15 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 16 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 17 N -0.94 -57.21 13.29 21.45 0.28 -56.92 16 18 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C -0.13 -1.90 9.88 30.59 0.30 -1.60 16 23 C -0.13 -2.03 9.76 30.59 0.30 -1.73 16 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 28 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.08 7.90 -2.39 -0.02 1.06 16 31 H 0.35 9.03 6.45 -89.70 -0.58 8.45 16 32 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.04 1.68 6.95 -2.39 -0.02 1.67 16 35 H 0.06 1.90 6.68 -2.38 -0.02 1.89 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 38 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 40 H 0.13 1.35 8.05 -2.38 -0.02 1.33 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.79 7.67 -2.39 -0.02 1.77 16 43 H 0.13 1.45 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.79 351.62 5.01 -62.79 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.39 Total: 15.42 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 4.55 Total: -21.07 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -1.93 Total: -77.61 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.03 Total: -25.93 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.79 5.01 -62.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602619704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.704 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds