Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46741 * 2 1 4 4 O 1.45200 * 109.47150 * 119.99673 * 2 1 3 5 5 C 1.34225 * 116.99992 * 150.00321 * 4 2 1 6 6 O 1.20828 * 119.99975 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00317 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.46947 * 30.94516 * 7 5 4 9 9 C 1.52999 * 109.46796 * 270.94715 * 7 5 4 10 10 N 1.46895 * 109.47588 * 150.94769 * 7 5 4 11 11 C 1.46897 * 110.99808 * 292.36690 * 10 7 5 12 12 C 1.46898 * 111.00246 * 168.41274 * 10 7 5 13 13 C 1.53004 * 109.47479 * 183.66039 * 12 10 7 14 14 C 1.50698 * 115.54510 * 280.62662 * 13 12 10 15 15 H 1.08006 * 119.99718 * 114.19761 * 14 13 12 16 16 C 1.37872 * 120.00142 * 294.19585 * 14 13 12 17 17 N 1.31517 * 120.00228 * 347.48024 * 16 14 13 18 18 Si 1.86801 * 120.00057 * 167.48486 * 16 14 13 19 19 H 1.48499 * 109.47271 * 59.99964 * 18 16 14 20 20 H 1.48499 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47240 * 300.00000 * 18 16 14 22 22 C 1.52999 * 117.50124 * 134.91915 * 13 12 10 23 23 C 1.52995 * 117.49782 * 66.29182 * 13 12 10 24 24 H 1.08998 * 109.47474 * 299.99703 * 1 2 3 25 25 H 1.09004 * 109.47367 * 60.00262 * 1 2 3 26 26 H 1.09005 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47373 * 239.99911 * 2 1 3 28 28 H 1.09004 * 109.46976 * 299.99977 * 3 2 1 29 29 H 1.08998 * 109.46894 * 59.99942 * 3 2 1 30 30 H 1.08994 * 109.46778 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47329 * 179.97438 * 9 7 5 32 32 H 1.08999 * 109.47308 * 300.00178 * 9 7 5 33 33 H 1.09003 * 109.47518 * 59.99844 * 9 7 5 34 34 H 1.08994 * 109.47256 * 53.63385 * 11 10 7 35 35 H 1.09011 * 109.46773 * 173.62682 * 11 10 7 36 36 H 1.08997 * 109.47300 * 293.62719 * 11 10 7 37 37 H 1.09007 * 109.47055 * 303.66112 * 12 10 7 38 38 H 1.09001 * 109.46975 * 63.65677 * 12 10 7 39 39 H 0.96994 * 120.00328 * 185.15201 * 17 16 14 40 40 H 1.08994 * 117.49417 * 359.97438 * 22 13 12 41 41 H 1.08998 * 117.49785 * 145.02710 * 22 13 12 42 42 H 1.09002 * 117.49758 * 214.98220 * 23 13 12 43 43 H 1.08995 * 117.50246 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1937 -1.3169 1.0852 6 8 3.8015 -1.2996 0.0411 7 6 3.7595 -2.0495 2.2744 8 1 2.9435 -2.4343 2.8860 9 6 4.6117 -1.0893 3.1066 10 7 4.5926 -3.1668 1.8102 11 6 3.7739 -4.2000 1.1621 12 6 5.3770 -3.7333 2.9156 13 6 6.2972 -4.8310 2.3778 14 6 5.6421 -6.1658 2.1325 15 1 5.5587 -6.5496 1.1264 16 6 5.1493 -6.8970 3.1924 17 7 5.4616 -6.5610 4.4249 18 14 4.0380 -8.3652 2.8777 19 1 4.7630 -9.3678 2.0564 20 1 3.6470 -8.9768 4.1732 21 1 2.8210 -7.9186 2.1532 22 6 7.7495 -4.8341 2.8593 23 6 7.4192 -4.4093 1.4270 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 5.0207 -1.6191 3.9670 32 1 5.4277 -0.7044 2.4950 33 1 3.9936 -0.2602 3.4511 34 1 3.1714 -3.7458 0.3756 35 1 4.4242 -4.9599 0.7286 36 1 3.1188 -4.6612 1.9012 37 1 5.9778 -2.9480 3.3745 38 1 4.7027 -4.1567 3.6600 39 1 5.1772 -7.1179 5.1664 40 1 8.0494 -4.0539 3.5588 41 1 8.2314 -5.8018 2.9987 42 1 7.6838 -5.0975 0.6242 43 1 7.5015 -3.3499 1.1841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602789402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -57.487536 kcal Electronic energy + Delta-G solvation = -21909.008977 eV Core-core repulsion = 18762.500973 eV Total energy + Delta-G solvation = -3146.508005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42427 -37.94707 -36.52568 -35.06408 -33.16126 -32.01047 -30.68091 -27.44417 -26.96588 -25.71972 -24.53827 -22.97802 -21.13495 -20.91015 -19.79174 -18.72573 -17.65905 -16.32152 -16.06142 -15.70521 -15.02214 -14.73801 -14.50631 -13.95527 -13.88555 -13.49408 -13.07478 -12.89862 -12.66510 -12.46533 -12.37754 -11.95505 -11.84688 -11.73743 -11.39334 -11.35493 -11.12328 -10.99536 -10.91995 -10.70394 -10.55728 -10.47145 -10.34682 -10.08260 -9.84733 -9.30072 -8.86869 -8.42863 -8.07863 -7.47013 -6.05067 -4.05337 2.53021 2.77686 3.27681 3.33336 3.36576 4.38059 4.55775 4.67266 4.79459 4.87268 5.02942 5.18203 5.27147 5.34763 5.40506 5.54204 5.59628 5.62158 5.72707 5.78852 5.87982 5.96668 5.99390 6.08711 6.27674 6.30933 6.40981 6.56946 6.58241 6.65691 6.86345 6.88086 6.94016 7.14071 7.17844 7.43773 7.56372 7.77436 7.90147 7.94070 8.17153 8.47188 8.90574 9.54219 11.02308 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.005243 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.285653 B = 5338.926332 C = 5960.048338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 C -0.168 4.168 4 O -0.360 6.360 5 C 0.467 3.533 6 O -0.486 6.486 7 C 0.090 3.910 8 H 0.065 0.935 9 C -0.144 4.144 10 N -0.515 5.515 11 C 0.033 3.967 12 C 0.101 3.899 13 C 0.051 3.949 14 C -0.491 4.491 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.876 5.876 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.172 4.172 23 C -0.193 4.193 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.104 0.896 36 H 0.022 0.978 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 12.722 -3.879 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.225 4.225 4 O -0.278 6.278 5 C 0.307 3.693 6 O -0.370 6.370 7 C -0.020 4.020 8 H 0.082 0.918 9 C -0.201 4.201 10 N -0.240 5.240 11 C -0.115 4.115 12 C -0.025 4.025 13 C 0.050 3.950 14 C -0.529 4.529 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.513 5.513 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.210 4.210 23 C -0.231 4.231 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.122 0.878 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.245 12.917 -4.360 15.439 hybrid contribution -1.158 -1.161 0.397 1.687 sum -8.403 11.757 -3.963 14.984 Atomic orbital electron populations 1.21875 0.92711 1.03139 1.02835 1.22647 0.94748 0.92647 0.87664 1.22193 1.02251 0.95387 1.02717 1.86589 1.37318 1.63073 1.40809 1.23867 0.78588 0.76385 0.90418 1.90621 1.58885 1.57215 1.30275 1.21202 0.96255 0.94035 0.90524 0.91751 1.21880 0.99892 0.98258 1.00078 1.61907 1.23686 1.08313 1.30140 1.22533 0.96974 0.94804 0.97174 1.21774 0.95606 0.94795 0.90362 1.18713 0.85810 0.93492 0.96968 1.20403 1.37412 1.02057 0.92981 0.92172 1.24935 0.95978 0.97014 0.95130 1.69981 1.44716 1.38145 0.98416 0.86838 0.81795 0.83065 0.77485 1.20217 1.21348 1.20091 1.22695 1.03229 1.00075 0.95000 1.22744 1.08446 0.98881 0.92981 0.91509 0.90636 0.91701 0.89876 0.90990 0.91682 0.91906 0.90065 0.91202 0.91979 0.94681 0.87781 0.95918 0.92920 0.93380 0.92968 0.92170 0.90413 0.91075 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.57 37.16 0.36 -1.00 16 2 C 0.08 0.94 3.18 -26.73 -0.09 0.85 16 3 C -0.17 -1.71 9.55 37.16 0.35 -1.36 16 4 O -0.36 -5.37 9.88 -39.25 -0.39 -5.75 16 5 C 0.47 8.03 6.04 36.00 0.22 8.25 16 6 O -0.49 -9.56 15.50 -18.75 -0.29 -9.85 16 7 C 0.09 1.56 2.60 -68.87 -0.18 1.39 16 8 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 9 C -0.14 -2.13 8.53 37.16 0.32 -1.81 16 10 N -0.51 -10.53 4.33 -236.29 -1.02 -11.55 16 11 C 0.03 0.69 8.43 60.06 0.51 1.20 16 12 C 0.10 2.23 4.34 -3.82 -0.02 2.21 16 13 C 0.05 1.23 0.99 -155.66 -0.15 1.07 16 14 C -0.49 -12.80 6.29 -34.44 -0.22 -13.02 16 15 H 0.06 1.59 7.35 -52.48 -0.39 1.20 16 16 C 0.07 1.92 5.20 -17.82 -0.09 1.83 16 17 N -0.88 -23.97 12.85 55.43 0.71 -23.26 16 18 Si 0.88 20.55 29.56 -169.99 -5.02 15.52 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.17 -3.99 9.88 -26.73 -0.26 -4.26 16 23 C -0.19 -4.32 9.93 -26.73 -0.27 -4.59 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.11 7.15 -51.93 -0.37 0.74 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.21 6.24 -51.93 -0.32 0.88 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.69 6.92 -51.93 -0.36 0.33 16 35 H 0.10 2.38 5.31 -51.92 -0.28 2.11 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 1.09 5.77 -51.92 -0.30 0.79 16 38 H 0.05 1.17 7.48 -51.93 -0.39 0.78 16 39 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 40 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 41 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -28.65 346.42 -7.77 -36.42 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.45 Total: 2.48 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 0.48 Total: -9.23 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.31 Total: -34.81 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.68 Total: -15.60 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.65 -7.77 -36.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.064 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds