Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46741 * 2 1 4 4 O 1.45200 * 109.47150 * 119.99673 * 2 1 3 5 5 C 1.34225 * 116.99992 * 150.00321 * 4 2 1 6 6 O 1.20828 * 119.99975 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00317 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.46947 * 30.94516 * 7 5 4 9 9 C 1.52999 * 109.46796 * 270.94715 * 7 5 4 10 10 N 1.46895 * 109.47588 * 150.94769 * 7 5 4 11 11 C 1.46897 * 110.99808 * 292.36690 * 10 7 5 12 12 C 1.46898 * 111.00246 * 168.41274 * 10 7 5 13 13 C 1.53004 * 109.47479 * 183.66039 * 12 10 7 14 14 C 1.50698 * 115.54510 * 280.62662 * 13 12 10 15 15 H 1.08006 * 119.99718 * 114.19761 * 14 13 12 16 16 C 1.37872 * 120.00142 * 294.19585 * 14 13 12 17 17 N 1.31517 * 120.00228 * 347.48024 * 16 14 13 18 18 Si 1.86801 * 120.00057 * 167.48486 * 16 14 13 19 19 H 1.48499 * 109.47271 * 59.99964 * 18 16 14 20 20 H 1.48499 * 109.47318 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47240 * 300.00000 * 18 16 14 22 22 C 1.52999 * 117.50124 * 134.91915 * 13 12 10 23 23 C 1.52995 * 117.49782 * 66.29182 * 13 12 10 24 24 H 1.08998 * 109.47474 * 299.99703 * 1 2 3 25 25 H 1.09004 * 109.47367 * 60.00262 * 1 2 3 26 26 H 1.09005 * 109.47021 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47373 * 239.99911 * 2 1 3 28 28 H 1.09004 * 109.46976 * 299.99977 * 3 2 1 29 29 H 1.08998 * 109.46894 * 59.99942 * 3 2 1 30 30 H 1.08994 * 109.46778 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.47329 * 179.97438 * 9 7 5 32 32 H 1.08999 * 109.47308 * 300.00178 * 9 7 5 33 33 H 1.09003 * 109.47518 * 59.99844 * 9 7 5 34 34 H 1.08994 * 109.47256 * 53.63385 * 11 10 7 35 35 H 1.09011 * 109.46773 * 173.62682 * 11 10 7 36 36 H 1.08997 * 109.47300 * 293.62719 * 11 10 7 37 37 H 1.09007 * 109.47055 * 303.66112 * 12 10 7 38 38 H 1.09001 * 109.46975 * 63.65677 * 12 10 7 39 39 H 0.96994 * 120.00328 * 185.15201 * 17 16 14 40 40 H 1.08994 * 117.49417 * 359.97438 * 22 13 12 41 41 H 1.08998 * 117.49785 * 145.02710 * 22 13 12 42 42 H 1.09002 * 117.49758 * 214.98220 * 23 13 12 43 43 H 1.08995 * 117.50246 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1937 -1.3169 1.0852 6 8 3.8015 -1.2996 0.0411 7 6 3.7595 -2.0495 2.2744 8 1 2.9435 -2.4343 2.8860 9 6 4.6117 -1.0893 3.1066 10 7 4.5926 -3.1668 1.8102 11 6 3.7739 -4.2000 1.1621 12 6 5.3770 -3.7333 2.9156 13 6 6.2972 -4.8310 2.3778 14 6 5.6421 -6.1658 2.1325 15 1 5.5587 -6.5496 1.1264 16 6 5.1493 -6.8970 3.1924 17 7 5.4616 -6.5610 4.4249 18 14 4.0380 -8.3652 2.8777 19 1 4.7630 -9.3678 2.0564 20 1 3.6470 -8.9768 4.1732 21 1 2.8210 -7.9186 2.1532 22 6 7.7495 -4.8341 2.8593 23 6 7.4192 -4.4093 1.4270 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 5.0207 -1.6191 3.9670 32 1 5.4277 -0.7044 2.4950 33 1 3.9936 -0.2602 3.4511 34 1 3.1714 -3.7458 0.3756 35 1 4.4242 -4.9599 0.7286 36 1 3.1188 -4.6612 1.9012 37 1 5.9778 -2.9480 3.3745 38 1 4.7027 -4.1567 3.6600 39 1 5.1772 -7.1179 5.1664 40 1 8.0494 -4.0539 3.5588 41 1 8.2314 -5.8018 2.9987 42 1 7.6838 -5.0975 0.6242 43 1 7.5015 -3.3499 1.1841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602789402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -72.868649 kcal Electronic energy + Delta-G solvation = -21909.675952 eV Core-core repulsion = 18762.500973 eV Total energy + Delta-G solvation = -3147.174980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73017 -39.54146 -37.91980 -36.69340 -34.13828 -34.02576 -32.09492 -28.64534 -28.19820 -27.69606 -25.92593 -24.48467 -22.83855 -22.18773 -21.18587 -20.53055 -18.99603 -18.05104 -17.43943 -17.08526 -16.66353 -16.42354 -15.78161 -15.55557 -15.33413 -14.78271 -14.54069 -14.29015 -14.02614 -13.70402 -13.37247 -13.22739 -13.16071 -13.03603 -12.93688 -12.87936 -12.70805 -12.66308 -12.39848 -12.28996 -12.13931 -11.94021 -11.89893 -11.54846 -11.26848 -11.14647 -10.79484 -10.36635 -9.96134 -9.14131 -8.07402 -6.11284 1.18171 1.40560 1.43361 1.48909 1.57759 2.43416 3.01374 3.16720 3.65799 3.75962 3.82563 3.93258 4.01044 4.08001 4.15072 4.22787 4.51420 4.61846 4.66534 4.68499 4.72219 4.77070 4.77654 4.79855 4.83173 4.88453 4.97634 5.09085 5.11181 5.12225 5.18822 5.22133 5.31976 5.35288 5.50308 5.61798 5.70268 5.82660 6.16801 6.25039 6.47891 6.83748 6.88828 7.49791 8.99445 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.005243 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.285653 B = 5338.926332 C = 5960.048338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 C -0.164 4.164 4 O -0.359 6.359 5 C 0.474 3.526 6 O -0.515 6.515 7 C 0.084 3.916 8 H 0.071 0.929 9 C -0.138 4.138 10 N -0.520 5.520 11 C 0.044 3.956 12 C 0.116 3.884 13 C 0.027 3.973 14 C -0.497 4.497 15 H 0.049 0.951 16 C 0.035 3.965 17 N -0.901 5.901 18 Si 0.932 3.068 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.171 4.171 23 C -0.176 4.176 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.012 0.988 37 H 0.068 0.932 38 H 0.021 0.979 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 14.240 -4.089 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 C -0.221 4.221 4 O -0.276 6.276 5 C 0.316 3.684 6 O -0.402 6.402 7 C -0.026 4.026 8 H 0.088 0.912 9 C -0.195 4.195 10 N -0.246 5.246 11 C -0.104 4.104 12 C -0.010 4.010 13 C 0.027 3.973 14 C -0.535 4.535 15 H 0.067 0.933 16 C -0.166 4.166 17 N -0.538 5.538 18 Si 0.758 3.242 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.210 4.210 23 C -0.214 4.214 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.030 0.970 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.424 14.446 -4.575 17.337 hybrid contribution -0.833 -1.574 0.406 1.826 sum -9.257 12.872 -4.169 16.394 Atomic orbital electron populations 1.21902 0.90183 1.03307 1.04601 1.23046 0.96666 0.93227 0.85865 1.22184 1.00993 0.94313 1.04578 1.86569 1.35962 1.62821 1.42287 1.23703 0.78916 0.76090 0.89675 1.90611 1.59884 1.58500 1.31254 1.21335 0.96592 0.93550 0.91135 0.91177 1.21863 0.99815 0.98444 0.99355 1.61832 1.24460 1.08571 1.29740 1.22328 0.96367 0.94654 0.97051 1.21511 0.95041 0.94492 0.89995 1.18882 0.86512 0.93611 0.98344 1.20560 1.37449 1.03030 0.92453 0.93269 1.25463 0.96921 0.99232 0.94983 1.70064 1.45748 1.39122 0.98891 0.86025 0.80345 0.80554 0.77274 1.20084 1.21164 1.19733 1.22637 1.02606 0.99723 0.96012 1.22689 1.06875 0.99425 0.92363 0.90563 0.88019 0.92363 0.91537 0.88509 0.90467 0.93828 0.90168 0.91647 0.89130 0.93734 0.89909 0.96975 0.91415 0.96030 0.93114 0.90679 0.92188 0.91357 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.57 71.98 0.69 -1.55 16 2 C 0.07 1.48 3.18 30.60 0.10 1.58 16 3 C -0.16 -2.96 9.55 71.98 0.69 -2.27 16 4 O -0.36 -10.15 9.88 -51.37 -0.51 -10.66 16 5 C 0.47 15.84 6.04 71.24 0.43 16.27 16 6 O -0.52 -20.03 15.50 21.96 0.34 -19.69 16 7 C 0.08 2.82 2.60 44.17 0.11 2.93 16 8 H 0.07 2.30 8.11 -2.39 -0.02 2.28 16 9 C -0.14 -3.81 8.53 71.98 0.61 -3.20 16 10 N -0.52 -21.06 4.33 -901.48 -3.90 -24.97 16 11 C 0.04 1.87 8.43 127.69 1.08 2.94 16 12 C 0.12 5.10 4.34 86.30 0.37 5.48 16 13 C 0.03 1.31 0.99 -52.93 -0.05 1.26 16 14 C -0.50 -26.20 6.29 25.60 0.16 -26.04 16 15 H 0.05 2.64 7.35 -2.91 -0.02 2.62 16 16 C 0.03 1.85 5.20 84.65 0.44 2.29 16 17 N -0.90 -49.62 12.85 21.45 0.28 -49.35 16 18 Si 0.93 42.38 29.56 68.60 2.03 44.41 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 C -0.17 -7.92 9.88 30.60 0.30 -7.61 16 23 C -0.18 -7.78 9.93 30.59 0.30 -7.48 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 25 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.07 1.72 7.15 -2.39 -0.02 1.70 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 2.24 6.24 -2.38 -0.01 2.23 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.04 1.76 6.92 -2.39 -0.02 1.74 16 35 H 0.08 3.85 5.31 -2.38 -0.01 3.84 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 2.73 5.77 -2.38 -0.01 2.72 16 38 H 0.02 1.06 7.48 -2.39 -0.02 1.04 16 39 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 40 H 0.07 3.20 8.09 -2.39 -0.02 3.18 16 41 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 42 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -60.85 346.42 4.44 -56.41 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.96 Total: 19.25 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.24 Total: -15.40 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -3.63 Total: -74.31 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.17 Total: -30.36 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.85 4.44 -56.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602789402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.454 kcal (2) G-P(sol) polarization free energy of solvation -60.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds