Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45208 * 109.46779 * 2 1 4 4 C 1.34233 * 116.99767 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99768 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99761 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.47378 * 60.00037 * 6 4 3 8 8 C 1.53004 * 109.46987 * 299.99495 * 6 4 3 9 9 C 1.52998 * 109.47012 * 179.97438 * 6 4 3 10 10 H 1.08998 * 109.47066 * 305.95311 * 9 6 4 11 11 C 1.53002 * 109.47481 * 65.95262 * 9 6 4 12 12 N 1.46907 * 109.47468 * 185.95459 * 9 6 4 13 13 C 1.46891 * 111.00258 * 152.35637 * 12 9 6 14 14 C 1.52999 * 109.47173 * 183.05494 * 13 12 9 15 15 C 1.50693 * 115.56431 * 325.11782 * 14 13 12 16 16 H 1.07999 * 120.00330 * 94.78967 * 15 14 13 17 17 C 1.37884 * 119.99607 * 274.79154 * 15 14 13 18 18 N 1.31512 * 120.00113 * 7.08758 * 17 15 14 19 19 Si 1.86804 * 119.99845 * 187.08381 * 17 15 14 20 20 H 1.48500 * 109.46892 * 60.00164 * 19 17 15 21 21 H 1.48494 * 109.46928 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47017 * 300.00250 * 19 17 15 23 23 C 1.53002 * 117.49763 * 179.42001 * 14 13 12 24 24 C 1.53002 * 60.03258 * 252.50306 * 23 14 13 25 25 H 1.08997 * 109.47467 * 300.00119 * 1 2 3 26 26 H 1.09000 * 109.47092 * 60.00553 * 1 2 3 27 27 H 1.09000 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47467 * 239.99881 * 2 1 3 29 29 H 1.09000 * 109.47092 * 119.99447 * 2 1 3 30 30 H 1.09000 * 109.47000 * 65.96001 * 8 6 4 31 31 H 1.09000 * 109.46898 * 185.95250 * 8 6 4 32 32 H 1.08998 * 109.47165 * 305.95363 * 8 6 4 33 33 H 1.08997 * 109.47199 * 180.02562 * 11 9 6 34 34 H 1.09002 * 109.46894 * 300.00775 * 11 9 6 35 35 H 1.09005 * 109.46584 * 59.99802 * 11 9 6 36 36 H 1.00897 * 110.99197 * 28.40280 * 12 9 6 37 37 H 1.09004 * 109.47067 * 63.05537 * 13 12 9 38 38 H 1.09001 * 109.47390 * 303.05934 * 13 12 9 39 39 H 0.96995 * 120.00301 * 174.98211 * 18 17 15 40 40 H 1.08992 * 117.50145 * 0.02562 * 23 14 13 41 41 H 1.09006 * 117.49432 * 145.00528 * 23 14 13 42 42 H 1.09004 * 117.49705 * 107.50921 * 24 23 14 43 43 H 1.08999 * 117.49819 * 252.52145 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4692 0.8905 8 6 3.4485 3.6851 -1.2487 9 6 5.4485 2.8575 -0.0001 10 1 5.7798 2.2356 0.8315 11 6 5.9271 2.2444 -1.3177 12 7 6.0097 4.2075 0.1441 13 6 7.3300 4.1630 0.7863 14 6 7.8474 5.5886 0.9879 15 6 7.4767 6.5736 -0.0906 16 1 6.6042 7.1994 0.0262 17 6 8.2513 6.6758 -1.2267 18 7 9.2296 5.8218 -1.4346 19 14 7.9112 8.0273 -2.4706 20 1 8.0588 9.3517 -1.8153 21 1 8.8769 7.9208 -3.5936 22 1 6.5279 7.8841 -2.9913 23 6 9.2119 5.7566 1.6594 24 6 7.9350 6.1126 2.4236 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.3701 3.8350 -1.1964 31 1 3.9475 4.6527 -1.3032 32 1 3.6916 3.1004 -2.1359 33 1 7.0155 2.1870 -1.3176 34 1 5.5107 1.2427 -1.4247 35 1 5.5957 2.8663 -2.1493 36 1 5.3795 4.8083 0.6541 37 1 8.0239 3.6109 0.1524 38 1 7.2473 3.6663 1.7530 39 1 9.7275 5.8477 -2.2666 40 1 9.7411 4.8515 1.9572 41 1 9.8416 6.5794 1.3207 42 1 7.6242 5.4416 3.2244 43 1 7.7246 7.1695 2.5872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -69.600382 kcal Electronic energy + Delta-G solvation = -21428.784886 eV Core-core repulsion = 18281.751628 eV Total energy + Delta-G solvation = -3147.033257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64687 -37.71245 -36.66305 -35.65275 -32.37859 -31.74837 -31.46433 -28.50682 -25.64762 -25.27044 -24.52150 -23.18441 -21.41456 -21.02848 -19.30219 -18.85034 -17.57647 -16.68202 -16.40823 -15.75081 -14.96231 -14.89405 -14.37423 -14.21616 -13.77992 -13.53430 -13.18867 -12.98614 -12.53330 -12.28107 -12.20609 -12.03914 -11.79841 -11.73153 -11.58867 -11.46593 -11.06991 -10.83392 -10.70407 -10.66583 -10.50657 -10.41221 -10.33286 -10.10147 -9.99528 -9.34222 -8.77179 -8.26049 -7.96215 -7.38562 -5.84543 -3.86487 2.27297 2.63285 3.41017 3.45519 3.47868 4.54322 4.60617 4.71271 4.79289 4.85273 5.01877 5.05626 5.21243 5.34264 5.39836 5.47304 5.52362 5.53986 5.73057 5.85232 5.92927 6.01238 6.15564 6.25730 6.32631 6.34178 6.43063 6.52681 6.59829 6.61357 6.66403 6.78600 6.91919 7.05420 7.17158 7.50515 7.53246 7.80676 8.04942 8.10297 8.32957 8.61771 9.08565 9.75786 11.25097 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.004497 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.191007 B = 6225.347886 C = 6728.441265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.468 3.532 5 O -0.503 6.503 6 C -0.083 4.083 7 H 0.103 0.897 8 C -0.139 4.139 9 C 0.099 3.901 10 H 0.040 0.960 11 C -0.141 4.141 12 N -0.646 5.646 13 C 0.111 3.889 14 C 0.048 3.952 15 C -0.469 4.469 16 H 0.056 0.944 17 C 0.078 3.922 18 N -0.881 5.881 19 Si 0.885 3.115 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.158 4.158 24 C -0.220 4.220 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.333 0.667 37 H 0.069 0.931 38 H -0.007 1.007 39 H 0.256 0.744 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.294 -8.876 2.524 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.311 3.689 5 O -0.390 6.390 6 C -0.102 4.102 7 H 0.121 0.879 8 C -0.197 4.197 9 C -0.011 4.011 10 H 0.058 0.942 11 C -0.198 4.198 12 N -0.277 5.277 13 C -0.018 4.018 14 C 0.047 3.953 15 C -0.507 4.507 16 H 0.074 0.926 17 C -0.125 4.125 18 N -0.518 5.518 19 Si 0.714 3.286 20 H -0.207 1.207 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.196 4.196 24 C -0.257 4.257 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.151 0.849 37 H 0.088 0.912 38 H 0.011 0.989 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.640 -9.194 1.771 16.544 hybrid contribution -0.250 0.226 0.250 0.420 sum -13.890 -8.968 2.021 16.656 Atomic orbital electron populations 1.21796 0.92772 1.02784 1.03524 1.22985 0.95257 0.80711 1.02470 1.86530 1.24986 1.31909 1.84177 1.23928 0.80187 0.92988 0.71821 1.90637 1.60171 1.43273 1.44965 1.21322 0.97017 0.89301 1.02597 0.87880 1.21774 1.00798 1.02000 0.95079 1.21346 0.88899 0.92326 0.98570 0.94178 1.21889 1.01805 0.99346 0.96803 1.60440 1.04161 1.06563 1.56550 1.21513 0.89659 0.97506 0.93100 1.18915 0.95091 0.92309 0.88970 1.20064 1.10182 1.18527 1.01894 0.92608 1.24833 0.94663 0.95485 0.97515 1.69960 1.21697 1.35643 1.24505 0.86790 0.77941 0.82810 0.81097 1.20706 1.21701 1.20289 1.22485 0.91484 1.00846 1.04771 1.23121 1.05678 0.99950 0.96980 0.91516 0.91457 0.90425 0.91341 0.91430 0.92364 0.88977 0.92092 0.92403 0.92635 0.92064 0.84896 0.91229 0.98902 0.93373 0.92189 0.90126 0.92174 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.53 10.15 -39.27 -0.40 -4.93 16 4 C 0.47 6.79 6.97 36.00 0.25 7.04 16 5 O -0.50 -8.48 13.78 -18.75 -0.26 -8.74 16 6 C -0.08 -1.17 2.51 -91.77 -0.23 -1.40 16 7 H 0.10 1.29 8.00 -51.93 -0.42 0.88 16 8 C -0.14 -1.86 8.35 37.16 0.31 -1.55 16 9 C 0.10 1.69 2.05 -67.71 -0.14 1.56 16 10 H 0.04 0.73 7.49 -51.93 -0.39 0.34 16 11 C -0.14 -2.51 8.69 37.16 0.32 -2.19 16 12 N -0.65 -12.66 4.95 -106.73 -0.53 -13.19 16 13 C 0.11 2.45 5.65 -3.83 -0.02 2.43 16 14 C 0.05 1.15 1.70 -155.62 -0.26 0.88 16 15 C -0.47 -12.33 8.04 -34.44 -0.28 -12.61 16 16 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 17 C 0.08 2.10 5.38 -17.82 -0.10 2.01 16 18 N -0.88 -24.93 12.94 55.43 0.72 -24.21 16 19 Si 0.89 21.22 29.55 -169.99 -5.02 16.19 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.16 -3.72 9.47 -26.73 -0.25 -3.97 16 24 C -0.22 -4.75 9.88 -26.69 -0.26 -5.01 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.36 7.63 -51.93 -0.40 0.96 16 32 H 0.06 0.83 6.70 -51.93 -0.35 0.48 16 33 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 34 H 0.05 0.95 6.04 -51.93 -0.31 0.64 16 35 H 0.06 1.09 6.47 -51.93 -0.34 0.75 16 36 H 0.33 6.15 8.18 -39.29 -0.32 5.83 16 37 H 0.07 1.71 7.70 -51.93 -0.40 1.32 16 38 H -0.01 -0.15 7.74 -51.93 -0.40 -0.55 16 39 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 42 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -29.17 348.98 -7.77 -36.93 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.49 Total: 5.36 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.05 Total: -12.67 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.19 Total: -37.41 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.66 Total: -13.67 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.17 -7.77 -36.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.666 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds