Wall clock time and date at job start Mon Mar 30 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45208 * 109.46779 * 2 1 4 4 C 1.34233 * 116.99767 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99768 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99761 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.47378 * 60.00037 * 6 4 3 8 8 C 1.53004 * 109.46987 * 299.99495 * 6 4 3 9 9 C 1.52998 * 109.47012 * 179.97438 * 6 4 3 10 10 H 1.08998 * 109.47066 * 305.95311 * 9 6 4 11 11 C 1.53002 * 109.47481 * 65.95262 * 9 6 4 12 12 N 1.46907 * 109.47468 * 185.95459 * 9 6 4 13 13 C 1.46891 * 111.00258 * 152.35637 * 12 9 6 14 14 C 1.52999 * 109.47173 * 183.05494 * 13 12 9 15 15 C 1.50693 * 115.56431 * 325.11782 * 14 13 12 16 16 H 1.07999 * 120.00330 * 94.78967 * 15 14 13 17 17 C 1.37884 * 119.99607 * 274.79154 * 15 14 13 18 18 N 1.31512 * 120.00113 * 7.08758 * 17 15 14 19 19 Si 1.86804 * 119.99845 * 187.08381 * 17 15 14 20 20 H 1.48500 * 109.46892 * 60.00164 * 19 17 15 21 21 H 1.48494 * 109.46928 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47017 * 300.00250 * 19 17 15 23 23 C 1.53002 * 117.49763 * 179.42001 * 14 13 12 24 24 C 1.53002 * 60.03258 * 252.50306 * 23 14 13 25 25 H 1.08997 * 109.47467 * 300.00119 * 1 2 3 26 26 H 1.09000 * 109.47092 * 60.00553 * 1 2 3 27 27 H 1.09000 * 109.46855 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47467 * 239.99881 * 2 1 3 29 29 H 1.09000 * 109.47092 * 119.99447 * 2 1 3 30 30 H 1.09000 * 109.47000 * 65.96001 * 8 6 4 31 31 H 1.09000 * 109.46898 * 185.95250 * 8 6 4 32 32 H 1.08998 * 109.47165 * 305.95363 * 8 6 4 33 33 H 1.08997 * 109.47199 * 180.02562 * 11 9 6 34 34 H 1.09002 * 109.46894 * 300.00775 * 11 9 6 35 35 H 1.09005 * 109.46584 * 59.99802 * 11 9 6 36 36 H 1.00897 * 110.99197 * 28.40280 * 12 9 6 37 37 H 1.09004 * 109.47067 * 63.05537 * 13 12 9 38 38 H 1.09001 * 109.47390 * 303.05934 * 13 12 9 39 39 H 0.96995 * 120.00301 * 174.98211 * 18 17 15 40 40 H 1.08992 * 117.50145 * 0.02562 * 23 14 13 41 41 H 1.09006 * 117.49432 * 145.00528 * 23 14 13 42 42 H 1.09004 * 117.49705 * 107.50921 * 24 23 14 43 43 H 1.08999 * 117.49819 * 252.52145 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4692 0.8905 8 6 3.4485 3.6851 -1.2487 9 6 5.4485 2.8575 -0.0001 10 1 5.7798 2.2356 0.8315 11 6 5.9271 2.2444 -1.3177 12 7 6.0097 4.2075 0.1441 13 6 7.3300 4.1630 0.7863 14 6 7.8474 5.5886 0.9879 15 6 7.4767 6.5736 -0.0906 16 1 6.6042 7.1994 0.0262 17 6 8.2513 6.6758 -1.2267 18 7 9.2296 5.8218 -1.4346 19 14 7.9112 8.0273 -2.4706 20 1 8.0588 9.3517 -1.8153 21 1 8.8769 7.9208 -3.5936 22 1 6.5279 7.8841 -2.9913 23 6 9.2119 5.7566 1.6594 24 6 7.9350 6.1126 2.4236 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.3701 3.8350 -1.1964 31 1 3.9475 4.6527 -1.3032 32 1 3.6916 3.1004 -2.1359 33 1 7.0155 2.1870 -1.3176 34 1 5.5107 1.2427 -1.4247 35 1 5.5957 2.8663 -2.1493 36 1 5.3795 4.8083 0.6541 37 1 8.0239 3.6109 0.1524 38 1 7.2473 3.6663 1.7530 39 1 9.7275 5.8477 -2.2666 40 1 9.7411 4.8515 1.9572 41 1 9.8416 6.5794 1.3207 42 1 7.6242 5.4416 3.2244 43 1 7.7246 7.1695 2.5872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602809956.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:00 Heat of formation + Delta-G solvation = -85.419228 kcal Electronic energy + Delta-G solvation = -21429.470842 eV Core-core repulsion = 18281.751628 eV Total energy + Delta-G solvation = -3147.719214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.77205 -39.16928 -38.07039 -37.05326 -33.83688 -33.56718 -32.38950 -29.92271 -27.51796 -26.62819 -26.04169 -24.12210 -22.88445 -22.52262 -21.02263 -20.34059 -18.67619 -18.02526 -17.68798 -17.18268 -16.66928 -16.22664 -16.12772 -15.50534 -15.12288 -14.94596 -14.62520 -14.06601 -13.79452 -13.66520 -13.49351 -13.33830 -13.09782 -13.00704 -12.91554 -12.74909 -12.64937 -12.51020 -12.45952 -12.28355 -11.98671 -11.82948 -11.65227 -11.49244 -11.34047 -11.12333 -10.70464 -10.27041 -9.82892 -8.96819 -7.91161 -5.96917 1.14491 1.50471 1.50694 1.56604 1.62721 2.55793 3.35268 3.42798 3.52731 3.59902 3.83935 3.96606 4.02083 4.10138 4.24362 4.35925 4.40695 4.50032 4.56161 4.64109 4.76932 4.79632 4.86092 4.89616 4.93706 4.97873 5.02000 5.04474 5.08253 5.15399 5.22227 5.31178 5.34793 5.47915 5.50982 5.66845 5.71149 5.95457 6.39447 6.61067 6.73073 6.85445 7.04734 7.67667 9.17578 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.004497 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.191007 B = 6225.347886 C = 6728.441265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.474 3.526 5 O -0.532 6.532 6 C -0.077 4.077 7 H 0.126 0.874 8 C -0.133 4.133 9 C 0.103 3.897 10 H 0.031 0.969 11 C -0.133 4.133 12 N -0.653 5.653 13 C 0.125 3.875 14 C 0.023 3.977 15 C -0.469 4.469 16 H 0.054 0.946 17 C 0.031 3.969 18 N -0.912 5.912 19 Si 0.939 3.061 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.270 1.270 23 C -0.170 4.170 24 C -0.190 4.190 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.342 0.658 37 H 0.035 0.965 38 H 0.007 0.993 39 H 0.252 0.748 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -8.716 3.204 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.317 3.683 5 O -0.422 6.422 6 C -0.097 4.097 7 H 0.144 0.856 8 C -0.190 4.190 9 C -0.007 4.007 10 H 0.049 0.951 11 C -0.191 4.191 12 N -0.285 5.285 13 C -0.005 4.005 14 C 0.023 3.977 15 C -0.507 4.507 16 H 0.073 0.927 17 C -0.168 4.168 18 N -0.551 5.551 19 Si 0.767 3.233 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.196 1.196 23 C -0.208 4.208 24 C -0.227 4.227 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.161 0.839 37 H 0.053 0.947 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.085 -9.018 2.460 18.604 hybrid contribution 0.454 0.134 0.072 0.479 sum -15.631 -8.884 2.533 18.157 Atomic orbital electron populations 1.21816 0.90239 1.04340 1.03792 1.23305 0.97208 0.79339 1.02431 1.86517 1.23608 1.33599 1.83567 1.23861 0.80728 0.92571 0.71091 1.90632 1.60965 1.44117 1.46480 1.21217 0.94561 0.89783 1.04091 0.85626 1.21715 1.02167 1.00833 0.94310 1.21244 0.91208 0.90695 0.97518 0.95105 1.21806 1.00021 0.99795 0.97432 1.60276 1.03554 1.08154 1.56524 1.21211 0.90183 0.95961 0.93111 1.19047 0.95625 0.93009 0.90066 1.20327 1.09631 1.18457 1.02294 0.92741 1.25459 0.94801 0.97175 0.99366 1.70090 1.22881 1.37341 1.24741 0.85918 0.77781 0.80603 0.79015 1.20312 1.22278 1.19561 1.22401 0.91762 1.00490 1.06147 1.23107 1.02879 1.00616 0.96087 0.91165 0.91222 0.88237 0.91539 0.91449 0.89938 0.90363 0.92719 0.95000 0.92037 0.92230 0.83907 0.94675 0.97481 0.93954 0.91543 0.92496 0.89469 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 71.98 0.74 -0.91 16 2 C 0.05 0.92 6.19 71.98 0.45 1.36 16 3 O -0.36 -8.23 10.15 -51.45 -0.52 -8.75 16 4 C 0.47 12.98 6.97 71.23 0.50 13.48 16 5 O -0.53 -17.52 13.78 21.97 0.30 -17.22 16 6 C -0.08 -2.03 2.51 -11.54 -0.03 -2.06 16 7 H 0.13 2.79 8.00 -2.39 -0.02 2.77 16 8 C -0.13 -3.29 8.35 71.98 0.60 -2.69 16 9 C 0.10 3.49 2.05 44.91 0.09 3.58 16 10 H 0.03 1.11 7.49 -2.39 -0.02 1.10 16 11 C -0.13 -4.80 8.69 71.98 0.63 -4.17 16 12 N -0.65 -25.19 4.95 -491.58 -2.43 -27.62 16 13 C 0.12 5.49 5.65 86.30 0.49 5.98 16 14 C 0.02 1.10 1.70 -52.90 -0.09 1.01 16 15 C -0.47 -24.47 8.04 25.60 0.21 -24.26 16 16 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 17 C 0.03 1.69 5.38 84.66 0.46 2.15 16 18 N -0.91 -52.62 12.94 21.45 0.28 -52.34 16 19 Si 0.94 43.61 29.55 68.60 2.03 45.63 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C -0.17 -7.98 9.47 30.60 0.29 -7.69 16 24 C -0.19 -7.81 9.88 30.62 0.30 -7.51 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 29 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 2.18 7.63 -2.39 -0.02 2.17 16 32 H 0.05 1.41 6.70 -2.39 -0.02 1.39 16 33 H 0.03 1.28 7.69 -2.39 -0.02 1.26 16 34 H 0.06 2.13 6.04 -2.39 -0.01 2.11 16 35 H 0.06 2.13 6.47 -2.38 -0.02 2.12 16 36 H 0.34 12.07 8.18 -89.70 -0.73 11.34 16 37 H 0.03 1.77 7.70 -2.38 -0.02 1.76 16 38 H 0.01 0.30 7.74 -2.39 -0.02 0.28 16 39 H 0.25 14.22 8.32 -92.71 -0.77 13.44 16 40 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.06 2.91 8.14 -2.38 -0.02 2.89 16 42 H 0.09 3.13 8.06 -2.39 -0.02 3.11 16 43 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -62.22 348.98 4.52 -57.70 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.24 Total: 24.35 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 4.62 Total: -21.74 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -2.16 Total: -79.97 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.22 Total: -25.97 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.22 4.52 -57.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809956.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.720 kcal (2) G-P(sol) polarization free energy of solvation -62.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds