Wall clock time and date at job start Mon Mar 30 2020 01:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.47198 * 2 1 4 4 C 1.34230 * 116.99952 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00059 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99854 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46626 * 299.99349 * 6 4 3 8 8 C 1.52998 * 109.47464 * 59.99318 * 6 4 3 9 9 C 1.53005 * 109.46838 * 179.97438 * 6 4 3 10 10 H 1.08996 * 109.47162 * 53.28674 * 9 6 4 11 11 C 1.52992 * 109.47079 * 293.28334 * 9 6 4 12 12 N 1.46903 * 109.46811 * 173.28156 * 9 6 4 13 13 C 1.46895 * 110.99892 * 203.20465 * 12 9 6 14 14 C 1.53003 * 109.46873 * 177.01726 * 13 12 9 15 15 C 1.50701 * 115.55085 * 282.25922 * 14 13 12 16 16 H 1.08001 * 120.00182 * 143.79313 * 15 14 13 17 17 C 1.37879 * 120.00078 * 323.79099 * 15 14 13 18 18 N 1.31519 * 119.99987 * 337.64313 * 17 15 14 19 19 Si 1.86797 * 120.00228 * 157.64640 * 17 15 14 20 20 H 1.48504 * 109.47105 * 59.99631 * 19 17 15 21 21 H 1.48492 * 109.47367 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46890 * 300.00301 * 19 17 15 23 23 C 1.52999 * 117.49780 * 136.55554 * 14 13 12 24 24 C 1.52998 * 117.49951 * 67.93377 * 14 13 12 25 25 H 1.08994 * 109.46842 * 60.00128 * 1 2 3 26 26 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46799 * 300.00227 * 1 2 3 28 28 H 1.08998 * 109.46796 * 239.99660 * 2 1 3 29 29 H 1.09010 * 109.47001 * 119.99578 * 2 1 3 30 30 H 1.09008 * 109.46732 * 52.79074 * 8 6 4 31 31 H 1.08999 * 109.46892 * 172.78833 * 8 6 4 32 32 H 1.09000 * 109.47193 * 292.78985 * 8 6 4 33 33 H 1.09003 * 109.47032 * 180.02562 * 11 9 6 34 34 H 1.08996 * 109.47402 * 300.00194 * 11 9 6 35 35 H 1.08998 * 109.47094 * 60.00295 * 11 9 6 36 36 H 1.00897 * 111.00126 * 327.16631 * 12 9 6 37 37 H 1.08996 * 109.47426 * 297.02104 * 13 12 9 38 38 H 1.09004 * 109.47287 * 57.02153 * 13 12 9 39 39 H 0.96996 * 119.99912 * 185.04120 * 18 17 15 40 40 H 1.09007 * 117.49851 * 359.97438 * 23 14 13 41 41 H 1.08998 * 117.50374 * 145.01849 * 23 14 13 42 42 H 1.09003 * 117.49568 * 214.97815 * 24 14 13 43 43 H 1.09004 * 117.49839 * 359.96880 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5845 3.4699 -0.8896 8 6 3.4498 3.6837 1.2498 9 6 5.4487 2.8572 -0.0001 10 1 5.7793 2.2251 -0.8242 11 6 5.9282 2.2606 1.3246 12 7 6.0097 4.2053 -0.1616 13 6 7.3723 4.1465 -0.7073 14 6 7.8939 5.5675 -0.9306 15 6 7.3718 6.2658 -2.1598 16 1 7.1725 7.3269 -2.1344 17 6 7.1488 5.5500 -3.3170 18 7 7.7717 4.4087 -3.5146 19 14 5.9619 6.2013 -4.6040 20 1 6.4317 7.5251 -5.0859 21 1 5.8990 5.2525 -5.7445 22 1 4.6109 6.3440 -4.0043 23 6 9.3326 5.8669 -0.5049 24 6 8.1625 6.4243 0.3081 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.6735 3.0878 2.1347 31 1 3.9655 4.6416 1.3169 32 1 2.3748 3.8533 1.1882 33 1 7.0168 2.2039 1.3246 34 1 5.5976 2.8927 2.1486 35 1 5.5120 1.2604 1.4443 36 1 5.4132 4.7784 -0.7393 37 1 8.0232 3.6269 -0.0043 38 1 7.3609 3.6104 -1.6563 39 1 7.6717 3.9415 -4.3587 40 1 9.9075 5.0517 -0.0654 41 1 9.9020 6.5690 -1.1140 42 1 7.9620 7.4931 0.2339 43 1 7.9672 5.9758 1.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:05 Heat of formation + Delta-G solvation = -71.578802 kcal Electronic energy + Delta-G solvation = -21569.685618 eV Core-core repulsion = 18422.566570 eV Total energy + Delta-G solvation = -3147.119048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60753 -37.70495 -36.64667 -35.59827 -32.32688 -32.17346 -31.39894 -28.49263 -25.73715 -25.39939 -24.50955 -23.13210 -21.42250 -20.93277 -19.14166 -18.94615 -17.53803 -16.65263 -16.45942 -15.87416 -14.94199 -14.90729 -14.57052 -14.20487 -13.69619 -13.68749 -13.12990 -12.82432 -12.72013 -12.30327 -12.21951 -11.97552 -11.77419 -11.68578 -11.62194 -11.49321 -11.16590 -10.93978 -10.86790 -10.61844 -10.52355 -10.42743 -10.21498 -10.13393 -10.04696 -9.12791 -9.08213 -8.59938 -8.13385 -7.35593 -6.10085 -4.05868 2.31735 2.67016 3.23890 3.31562 3.34403 4.33728 4.63562 4.74686 4.82670 4.83719 4.97053 5.05806 5.09106 5.27920 5.36969 5.55475 5.57432 5.70067 5.75960 5.80489 5.91569 6.00241 6.14043 6.24176 6.30957 6.33772 6.48846 6.52701 6.58131 6.69994 6.73558 6.87372 6.99573 7.05939 7.18642 7.47596 7.58430 7.84335 7.95991 8.09924 8.35518 8.49495 8.88879 9.48160 10.90561 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.005307 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.158600 B = 5274.781079 C = 6132.005505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.503 6.503 6 C -0.084 4.084 7 H 0.106 0.894 8 C -0.136 4.136 9 C 0.099 3.901 10 H 0.047 0.953 11 C -0.141 4.141 12 N -0.675 5.675 13 C 0.089 3.911 14 C 0.057 3.943 15 C -0.496 4.496 16 H 0.061 0.939 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.204 4.204 24 C -0.196 4.196 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.343 0.657 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.262 0.738 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 -6.641 7.356 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.311 3.689 5 O -0.390 6.390 6 C -0.103 4.103 7 H 0.124 0.876 8 C -0.194 4.194 9 C -0.011 4.011 10 H 0.065 0.935 11 C -0.199 4.199 12 N -0.307 5.307 13 C -0.039 4.039 14 C 0.056 3.944 15 C -0.533 4.533 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.504 5.504 19 Si 0.707 3.293 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.243 4.243 24 C -0.233 4.233 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.769 -7.121 7.885 15.855 hybrid contribution -0.598 -0.103 -1.759 1.861 sum -12.367 -7.224 6.126 15.578 Atomic orbital electron populations 1.21796 0.92785 1.02769 1.03515 1.22986 0.95247 0.80729 1.02473 1.86526 1.24982 1.31903 1.84193 1.23908 0.80193 0.92973 0.71816 1.90637 1.60173 1.43245 1.44953 1.21287 0.97036 0.89348 1.02639 0.87611 1.21743 1.00990 1.01588 0.95031 1.21262 0.89008 0.92457 0.98386 0.93499 1.21903 1.01351 0.99864 0.96787 1.60647 1.04954 1.09205 1.55912 1.21654 0.86734 0.97238 0.98312 1.18858 0.92167 0.91680 0.91653 1.20513 1.43446 0.94577 0.94731 0.92114 1.24958 0.95393 0.94855 0.97804 1.69955 1.39322 1.16939 1.24201 0.86840 0.82590 0.78948 0.80900 1.20146 1.21402 1.19915 1.22945 0.93542 1.02734 1.05072 1.22717 1.05685 0.98579 0.96321 0.91482 0.90429 0.91504 0.91377 0.91387 0.92309 0.89346 0.92295 0.92808 0.92351 0.92346 0.83847 0.94691 0.90145 0.92740 0.92072 0.90761 0.91268 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.80 10.15 -39.26 -0.40 -5.20 16 4 C 0.47 7.17 6.97 36.01 0.25 7.42 16 5 O -0.50 -8.86 13.82 -18.75 -0.26 -9.12 16 6 C -0.08 -1.25 2.56 -91.77 -0.23 -1.48 16 7 H 0.11 1.55 7.99 -51.93 -0.41 1.13 16 8 C -0.14 -1.74 8.30 37.16 0.31 -1.43 16 9 C 0.10 1.75 2.03 -67.71 -0.14 1.62 16 10 H 0.05 0.96 7.53 -51.93 -0.39 0.56 16 11 C -0.14 -2.33 8.62 37.15 0.32 -2.01 16 12 N -0.68 -13.26 5.73 -106.73 -0.61 -13.87 16 13 C 0.09 2.04 5.14 -3.83 -0.02 2.02 16 14 C 0.06 1.39 1.85 -155.66 -0.29 1.10 16 15 C -0.50 -13.09 8.81 -34.44 -0.30 -13.39 16 16 H 0.06 1.62 7.91 -52.49 -0.42 1.21 16 17 C 0.07 1.93 5.04 -17.82 -0.09 1.84 16 18 N -0.87 -23.70 11.19 55.43 0.62 -23.08 16 19 Si 0.88 20.20 29.60 -169.99 -5.03 15.17 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 C -0.20 -4.76 9.88 -26.73 -0.26 -5.02 16 24 C -0.20 -4.31 9.94 -26.73 -0.27 -4.57 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.06 0.72 6.77 -51.92 -0.35 0.37 16 31 H 0.09 1.18 7.63 -51.93 -0.40 0.79 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.93 7.40 -51.93 -0.38 0.55 16 34 H 0.06 0.89 6.49 -51.93 -0.34 0.55 16 35 H 0.06 0.96 6.11 -51.93 -0.32 0.64 16 36 H 0.34 6.98 8.10 -39.29 -0.32 6.66 16 37 H 0.03 0.80 7.23 -51.93 -0.38 0.42 16 38 H 0.08 2.08 5.36 -51.93 -0.28 1.81 16 39 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 40 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 41 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -28.05 345.60 -7.92 -35.97 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.34 Total: 8.72 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.11 Total: -13.81 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.01 Total: -36.95 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.66 Total: -14.31 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.05 -7.92 -35.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.611 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds