Wall clock time and date at job start Mon Mar 30 2020 01:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.47198 * 2 1 4 4 C 1.34230 * 116.99952 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00059 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99854 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46626 * 299.99349 * 6 4 3 8 8 C 1.52998 * 109.47464 * 59.99318 * 6 4 3 9 9 C 1.53005 * 109.46838 * 179.97438 * 6 4 3 10 10 H 1.08996 * 109.47162 * 53.28674 * 9 6 4 11 11 C 1.52992 * 109.47079 * 293.28334 * 9 6 4 12 12 N 1.46903 * 109.46811 * 173.28156 * 9 6 4 13 13 C 1.46895 * 110.99892 * 203.20465 * 12 9 6 14 14 C 1.53003 * 109.46873 * 177.01726 * 13 12 9 15 15 C 1.50701 * 115.55085 * 282.25922 * 14 13 12 16 16 H 1.08001 * 120.00182 * 143.79313 * 15 14 13 17 17 C 1.37879 * 120.00078 * 323.79099 * 15 14 13 18 18 N 1.31519 * 119.99987 * 337.64313 * 17 15 14 19 19 Si 1.86797 * 120.00228 * 157.64640 * 17 15 14 20 20 H 1.48504 * 109.47105 * 59.99631 * 19 17 15 21 21 H 1.48492 * 109.47367 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46890 * 300.00301 * 19 17 15 23 23 C 1.52999 * 117.49780 * 136.55554 * 14 13 12 24 24 C 1.52998 * 117.49951 * 67.93377 * 14 13 12 25 25 H 1.08994 * 109.46842 * 60.00128 * 1 2 3 26 26 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46799 * 300.00227 * 1 2 3 28 28 H 1.08998 * 109.46796 * 239.99660 * 2 1 3 29 29 H 1.09010 * 109.47001 * 119.99578 * 2 1 3 30 30 H 1.09008 * 109.46732 * 52.79074 * 8 6 4 31 31 H 1.08999 * 109.46892 * 172.78833 * 8 6 4 32 32 H 1.09000 * 109.47193 * 292.78985 * 8 6 4 33 33 H 1.09003 * 109.47032 * 180.02562 * 11 9 6 34 34 H 1.08996 * 109.47402 * 300.00194 * 11 9 6 35 35 H 1.08998 * 109.47094 * 60.00295 * 11 9 6 36 36 H 1.00897 * 111.00126 * 327.16631 * 12 9 6 37 37 H 1.08996 * 109.47426 * 297.02104 * 13 12 9 38 38 H 1.09004 * 109.47287 * 57.02153 * 13 12 9 39 39 H 0.96996 * 119.99912 * 185.04120 * 18 17 15 40 40 H 1.09007 * 117.49851 * 359.97438 * 23 14 13 41 41 H 1.08998 * 117.50374 * 145.01849 * 23 14 13 42 42 H 1.09003 * 117.49568 * 214.97815 * 24 14 13 43 43 H 1.09004 * 117.49839 * 359.96880 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5845 3.4699 -0.8896 8 6 3.4498 3.6837 1.2498 9 6 5.4487 2.8572 -0.0001 10 1 5.7793 2.2251 -0.8242 11 6 5.9282 2.2606 1.3246 12 7 6.0097 4.2053 -0.1616 13 6 7.3723 4.1465 -0.7073 14 6 7.8939 5.5675 -0.9306 15 6 7.3718 6.2658 -2.1598 16 1 7.1725 7.3269 -2.1344 17 6 7.1488 5.5500 -3.3170 18 7 7.7717 4.4087 -3.5146 19 14 5.9619 6.2013 -4.6040 20 1 6.4317 7.5251 -5.0859 21 1 5.8990 5.2525 -5.7445 22 1 4.6109 6.3440 -4.0043 23 6 9.3326 5.8669 -0.5049 24 6 8.1625 6.4243 0.3081 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.6735 3.0878 2.1347 31 1 3.9655 4.6416 1.3169 32 1 2.3748 3.8533 1.1882 33 1 7.0168 2.2039 1.3246 34 1 5.5976 2.8927 2.1486 35 1 5.5120 1.2604 1.4443 36 1 5.4132 4.7784 -0.7393 37 1 8.0232 3.6269 -0.0043 38 1 7.3609 3.6104 -1.6563 39 1 7.6717 3.9415 -4.3587 40 1 9.9075 5.0517 -0.0654 41 1 9.9020 6.5690 -1.1140 42 1 7.9620 7.4931 0.2339 43 1 7.9672 5.9758 1.2823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602809958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:04 Heat of formation + Delta-G solvation = -86.608119 kcal Electronic energy + Delta-G solvation = -21570.337338 eV Core-core repulsion = 18422.566570 eV Total energy + Delta-G solvation = -3147.770768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.79719 -39.21092 -38.07723 -37.03486 -34.21132 -33.54063 -32.38552 -29.86700 -27.67702 -26.68634 -26.00806 -24.13614 -22.88590 -22.49560 -20.91496 -20.42167 -18.70668 -18.20262 -17.72592 -17.22918 -16.73265 -16.29301 -16.17355 -15.56990 -15.24494 -14.86986 -14.50276 -14.31031 -13.69596 -13.57457 -13.47048 -13.43142 -13.10766 -13.02829 -12.93712 -12.77310 -12.68666 -12.54088 -12.46443 -12.26337 -11.99805 -11.82571 -11.67094 -11.51983 -11.32963 -11.02705 -10.95406 -10.48620 -10.02966 -9.08550 -8.09788 -6.12153 1.11531 1.41016 1.45222 1.51728 1.59972 2.41873 2.96018 3.37689 3.51944 3.80290 3.83499 3.98001 4.01266 4.07964 4.22534 4.33320 4.38588 4.50346 4.62883 4.68719 4.78353 4.85815 4.88674 4.91485 4.97412 5.01088 5.05451 5.06446 5.09234 5.13431 5.25099 5.31352 5.34907 5.44991 5.48675 5.60071 5.65652 5.98982 6.36847 6.49476 6.65112 6.69657 6.89662 7.44487 8.88905 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.005307 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.158600 B = 5274.781079 C = 6132.005505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.473 3.527 5 O -0.532 6.532 6 C -0.081 4.081 7 H 0.109 0.891 8 C -0.128 4.128 9 C 0.101 3.899 10 H 0.014 0.986 11 C -0.132 4.132 12 N -0.661 5.661 13 C 0.102 3.898 14 C 0.032 3.968 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.036 3.964 18 N -0.895 5.895 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.262 1.262 23 C -0.211 4.211 24 C -0.170 4.170 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.339 0.661 37 H 0.032 0.968 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.165 -6.288 8.295 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.317 3.683 5 O -0.422 6.422 6 C -0.101 4.101 7 H 0.127 0.873 8 C -0.185 4.185 9 C -0.009 4.009 10 H 0.032 0.968 11 C -0.190 4.190 12 N -0.292 5.292 13 C -0.027 4.027 14 C 0.031 3.969 15 C -0.548 4.548 16 H 0.071 0.929 17 C -0.165 4.165 18 N -0.532 5.532 19 Si 0.763 3.237 20 H -0.200 1.200 21 H -0.217 1.217 22 H -0.186 1.186 23 C -0.250 4.250 24 C -0.207 4.207 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.803 -6.754 8.840 17.728 hybrid contribution 0.032 -0.254 -2.045 2.061 sum -13.772 -7.008 6.794 16.880 Atomic orbital electron populations 1.21818 0.90126 1.04394 1.03796 1.23319 0.97294 0.79307 1.02418 1.86515 1.23565 1.33669 1.83577 1.23873 0.80765 0.92599 0.71112 1.90629 1.60974 1.44091 1.46465 1.21214 0.94862 0.89832 1.04174 0.87289 1.21711 1.02179 1.00886 0.93774 1.21228 0.91201 0.90689 0.97817 0.96837 1.21814 1.00435 1.00169 0.96555 1.60628 1.03568 1.10203 1.54817 1.21357 0.88442 0.96149 0.96756 1.18977 0.92921 0.92628 0.92354 1.20709 1.43937 0.94412 0.95787 0.92867 1.25551 0.96308 0.95059 0.99592 1.70080 1.40426 1.18085 1.24579 0.85939 0.81115 0.78099 0.78582 1.20017 1.21678 1.18618 1.22942 0.93458 1.03029 1.05550 1.22683 1.03524 0.98510 0.95993 0.91478 0.88133 0.90893 0.91919 0.91098 0.91745 0.89761 0.90252 0.94100 0.90623 0.92257 0.84265 0.94958 0.93281 0.92989 0.91282 0.91754 0.90810 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 10.29 71.98 0.74 -1.10 16 2 C 0.05 0.99 6.19 71.98 0.45 1.44 16 3 O -0.36 -8.97 10.15 -51.41 -0.52 -9.49 16 4 C 0.47 14.07 6.97 71.24 0.50 14.56 16 5 O -0.53 -18.70 13.82 21.97 0.30 -18.40 16 6 C -0.08 -2.34 2.56 -11.54 -0.03 -2.37 16 7 H 0.11 3.08 7.99 -2.39 -0.02 3.06 16 8 C -0.13 -2.96 8.30 71.98 0.60 -2.37 16 9 C 0.10 3.57 2.03 44.91 0.09 3.66 16 10 H 0.01 0.57 7.53 -2.39 -0.02 0.56 16 11 C -0.13 -4.28 8.62 71.98 0.62 -3.66 16 12 N -0.66 -25.75 5.73 -491.58 -2.82 -28.57 16 13 C 0.10 4.74 5.14 86.31 0.44 5.18 16 14 C 0.03 1.55 1.85 -52.93 -0.10 1.45 16 15 C -0.51 -27.02 8.81 25.60 0.23 -26.79 16 16 H 0.05 2.83 7.91 -2.91 -0.02 2.81 16 17 C 0.04 1.91 5.04 84.65 0.43 2.34 16 18 N -0.89 -49.72 11.19 21.45 0.24 -49.48 16 19 Si 0.94 41.39 29.60 68.60 2.03 43.42 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 23 C -0.21 -9.76 9.88 30.59 0.30 -9.46 16 24 C -0.17 -7.23 9.94 30.59 0.30 -6.93 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.06 1.42 6.77 -2.38 -0.02 1.40 16 31 H 0.08 2.05 7.63 -2.39 -0.02 2.03 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.40 7.40 -2.39 -0.02 1.39 16 34 H 0.07 2.17 6.49 -2.39 -0.02 2.15 16 35 H 0.06 1.92 6.11 -2.39 -0.01 1.90 16 36 H 0.34 13.66 8.10 -89.70 -0.73 12.94 16 37 H 0.03 1.48 7.23 -2.39 -0.02 1.47 16 38 H 0.05 2.63 5.36 -2.39 -0.01 2.61 16 39 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 40 H 0.07 3.03 8.10 -2.38 -0.02 3.01 16 41 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -59.71 345.60 4.06 -55.65 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.26 Total: 30.92 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.57 Total: -24.05 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -2.58 Total: -78.05 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.22 Total: -27.89 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -59.71 4.06 -55.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.958 kcal (2) G-P(sol) polarization free energy of solvation -59.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds