Wall clock time and date at job start Mon Mar 30 2020 01:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47078 * 2 1 4 4 C 1.42904 * 113.99680 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.52476 * 329.87429 * 4 3 2 6 6 C 1.53093 * 109.51875 * 90.00101 * 4 3 2 7 7 O 1.42904 * 109.41948 * 62.36148 * 6 4 3 8 8 C 1.42901 * 114.09676 * 61.15425 * 7 6 4 9 9 C 1.53100 * 109.41583 * 298.84476 * 8 7 6 10 10 C 1.53172 * 109.16132 * 57.61037 * 9 8 7 11 11 H 1.08996 * 109.54559 * 62.89015 * 10 9 8 12 12 N 1.46903 * 109.61649 * 183.11117 * 10 9 8 13 13 C 1.46896 * 110.99967 * 274.60061 * 12 10 9 14 14 C 1.53000 * 109.47305 * 174.72533 * 13 12 10 15 15 C 1.50700 * 115.54797 * 65.16860 * 14 13 12 16 16 H 1.07992 * 119.99873 * 265.06983 * 15 14 13 17 17 C 1.37882 * 119.99989 * 85.06925 * 15 14 13 18 18 N 1.31517 * 119.99804 * 353.18430 * 17 15 14 19 19 Si 1.86798 * 119.99880 * 173.17782 * 17 15 14 20 20 H 1.48493 * 109.47309 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46608 * 120.00341 * 19 17 15 22 22 H 1.48493 * 109.47185 * 239.99862 * 19 17 15 23 23 C 1.52996 * 117.49915 * 279.49601 * 14 13 12 24 24 C 1.53003 * 117.49875 * 210.83776 * 14 13 12 25 25 H 1.09007 * 109.47074 * 59.99808 * 1 2 3 26 26 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46867 * 300.00185 * 1 2 3 28 28 H 1.08997 * 109.46867 * 239.99815 * 2 1 3 29 29 H 1.08998 * 109.46870 * 120.00050 * 2 1 3 30 30 H 1.08996 * 109.48254 * 302.37331 * 6 4 3 31 31 H 1.09010 * 109.48414 * 182.34777 * 6 4 3 32 32 H 1.09000 * 109.48574 * 58.82455 * 8 7 6 33 33 H 1.08995 * 109.48026 * 178.86299 * 8 7 6 34 34 H 1.09002 * 109.52082 * 297.70246 * 9 8 7 35 35 H 1.08999 * 109.52100 * 177.51709 * 9 8 7 36 36 H 1.00893 * 111.00558 * 150.64463 * 12 10 9 37 37 H 1.09004 * 109.47311 * 294.73065 * 13 12 10 38 38 H 1.09005 * 109.47310 * 54.72108 * 13 12 10 39 39 H 0.96999 * 119.99545 * 185.04039 * 18 17 15 40 40 H 1.08997 * 117.49863 * 0.02562 * 23 14 13 41 41 H 1.08999 * 117.49424 * 145.01932 * 23 14 13 42 42 H 1.08996 * 117.49490 * 214.98426 * 24 14 13 43 43 H 1.09007 * 117.49861 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8640 0.6031 0.5165 6 6 3.9415 1.5002 -1.4422 7 8 3.4183 2.6563 -2.0992 8 6 3.8101 3.8941 -1.5021 9 6 3.2943 3.9501 -0.0618 10 6 3.8433 2.7502 0.7160 11 1 4.9307 2.8110 0.7603 12 7 3.2950 2.7531 2.0788 13 6 4.0982 3.6033 2.9676 14 6 3.4253 3.6865 4.3391 15 6 3.3555 2.3926 5.1084 16 1 2.4695 1.7778 5.0517 17 6 4.4229 1.9936 5.8847 18 7 5.5503 2.6700 5.8500 19 14 4.2676 0.4926 6.9857 20 1 2.9080 -0.0873 6.8432 21 1 5.2805 -0.5186 6.5897 22 1 4.4912 0.8900 8.3989 23 6 2.2600 4.6655 4.4960 24 6 3.6130 4.9760 5.1411 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.6143 0.6036 -1.9686 31 1 5.0307 1.5442 -1.4413 32 1 4.8975 3.9696 -1.5019 33 1 3.3883 4.7221 -2.0718 34 1 2.2048 3.9156 -0.0635 35 1 3.6295 4.8740 0.4095 36 1 3.2249 1.8146 2.4424 37 1 5.0947 3.1753 3.0771 38 1 4.1773 4.6030 2.5403 39 1 6.3239 2.3484 6.3389 40 1 1.9726 5.2499 3.6221 41 1 1.4431 4.3737 5.1560 42 1 3.6857 4.8883 6.2250 43 1 4.2164 5.7648 4.6917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:52 Heat of formation + Delta-G solvation = -71.752380 kcal Electronic energy + Delta-G solvation = -21971.053979 eV Core-core repulsion = 18823.927404 eV Total energy + Delta-G solvation = -3147.126575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72559 -36.97420 -36.85901 -34.66410 -31.91620 -31.40187 -30.72318 -29.39567 -25.86045 -24.97723 -23.34746 -22.91826 -22.21558 -20.92049 -19.80145 -18.99870 -16.58548 -16.31867 -16.10550 -15.81625 -15.45211 -14.79824 -14.61838 -14.35193 -14.02511 -13.68809 -13.46899 -13.03559 -12.67325 -12.46897 -12.24758 -12.09299 -11.64999 -11.46867 -11.39638 -11.10864 -11.01491 -10.97201 -10.83102 -10.42271 -10.37390 -10.24884 -10.08411 -9.84049 -9.41840 -8.92580 -8.72427 -8.41060 -8.02588 -7.44011 -6.02779 -4.08310 3.24976 3.34611 3.38806 3.72389 4.06442 4.39051 4.67723 4.78982 5.01109 5.12131 5.20200 5.26191 5.27564 5.38003 5.43913 5.47736 5.49925 5.52883 5.65461 5.72245 5.84356 5.92271 6.04216 6.08684 6.19616 6.22697 6.27425 6.51636 6.60936 6.65682 6.87622 6.90129 6.95824 7.19718 7.20579 7.50665 7.55970 7.59734 7.88568 8.04279 8.31658 8.52303 8.95702 9.57102 11.05214 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.005838 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.250665 B = 4795.295941 C = 5455.597111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.349 6.349 4 C 0.057 3.943 5 H 0.065 0.935 6 C 0.043 3.957 7 O -0.374 6.374 8 C 0.061 3.939 9 C -0.137 4.137 10 C 0.091 3.909 11 H 0.045 0.955 12 N -0.663 5.663 13 C 0.106 3.894 14 C 0.051 3.949 15 C -0.490 4.490 16 H 0.060 0.940 17 C 0.069 3.931 18 N -0.881 5.881 19 Si 0.886 3.114 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.284 1.284 23 C -0.198 4.198 24 C -0.163 4.163 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.347 0.653 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.258 0.742 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -2.594 -13.303 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.268 6.268 4 C -0.002 4.002 5 H 0.083 0.917 6 C -0.034 4.034 7 O -0.293 6.293 8 C -0.016 4.016 9 C -0.176 4.176 10 C -0.020 4.020 11 H 0.063 0.937 12 N -0.295 5.295 13 C -0.023 4.023 14 C 0.050 3.950 15 C -0.528 4.528 16 H 0.078 0.922 17 C -0.134 4.134 18 N -0.518 5.518 19 Si 0.713 3.287 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.210 1.210 23 C -0.236 4.236 24 C -0.202 4.202 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.279 -1.918 -13.451 13.977 hybrid contribution 1.321 -1.581 1.130 2.350 sum -1.958 -3.499 -12.321 12.957 Atomic orbital electron populations 1.21686 0.93913 1.01655 1.03244 1.22478 0.95717 0.84692 0.99311 1.88078 1.19030 1.24969 1.94702 1.22915 0.83240 0.98571 0.95498 0.91667 1.23049 0.97494 0.89487 0.93416 1.87909 1.74217 1.13603 1.53534 1.22639 0.98276 0.86455 0.94276 1.22114 1.03266 0.98284 0.93887 1.21564 0.95991 0.93169 0.91280 0.93678 1.60353 1.52611 1.17085 0.99468 1.21489 0.94454 0.94181 0.92135 1.18711 0.94732 0.90056 0.91456 1.20523 1.01488 1.04730 1.26080 0.92166 1.25008 0.95573 0.96505 0.96276 1.70008 1.01173 1.38276 1.42366 0.86642 0.78126 0.82908 0.80977 1.19665 1.21251 1.20996 1.22851 0.92355 1.06804 1.01545 1.22535 0.97951 1.00626 0.99041 0.92156 0.91684 0.91458 0.94329 0.93458 0.89098 0.92629 0.93780 0.89027 0.89606 0.91323 0.83387 0.94938 0.94475 0.93223 0.91659 0.90977 0.90399 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 16 2 C 0.05 0.70 6.47 37.16 0.24 0.94 16 3 O -0.35 -5.49 9.22 -42.66 -0.39 -5.88 16 4 C 0.06 0.82 2.29 -26.59 -0.06 0.76 16 5 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 6 C 0.04 0.55 6.48 37.21 0.24 0.79 16 7 O -0.37 -5.38 10.70 -42.66 -0.46 -5.83 16 8 C 0.06 0.78 6.84 37.21 0.25 1.04 16 9 C -0.14 -2.09 5.47 -26.59 -0.15 -2.23 16 10 C 0.09 1.49 2.36 -67.53 -0.16 1.33 16 11 H 0.05 0.75 7.86 -51.93 -0.41 0.34 16 12 N -0.66 -13.10 6.10 -106.53 -0.65 -13.75 16 13 C 0.11 2.36 5.32 -3.83 -0.02 2.34 16 14 C 0.05 1.26 1.56 -155.66 -0.24 1.01 16 15 C -0.49 -13.10 8.33 -34.44 -0.29 -13.39 16 16 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 17 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 18 N -0.88 -24.63 12.94 55.43 0.72 -23.91 16 19 Si 0.89 20.83 29.55 -169.99 -5.02 15.80 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.20 -4.51 9.96 -26.70 -0.27 -4.77 16 24 C -0.16 -3.92 9.45 -26.69 -0.25 -4.17 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.43 7.83 -51.93 -0.41 0.02 16 29 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.09 1.01 7.83 -51.93 -0.41 0.60 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.47 7.83 -51.93 -0.41 1.06 16 35 H 0.07 1.04 7.50 -51.93 -0.39 0.65 16 36 H 0.35 7.24 7.93 -39.30 -0.31 6.93 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.79 7.38 -51.93 -0.38 0.41 16 39 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 40 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -28.75 345.77 -8.74 -37.49 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.73 Total: 6.78 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -0.41 Total: -15.92 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.07 Total: -37.66 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.85 Total: -11.71 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.75 -8.74 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.259 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds