Wall clock time and date at job start Mon Mar 30 2020 01:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47078 * 2 1 4 4 C 1.42904 * 113.99680 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.52476 * 329.87429 * 4 3 2 6 6 C 1.53093 * 109.51875 * 90.00101 * 4 3 2 7 7 O 1.42904 * 109.41948 * 62.36148 * 6 4 3 8 8 C 1.42901 * 114.09676 * 61.15425 * 7 6 4 9 9 C 1.53100 * 109.41583 * 298.84476 * 8 7 6 10 10 C 1.53172 * 109.16132 * 57.61037 * 9 8 7 11 11 H 1.08996 * 109.54559 * 62.89015 * 10 9 8 12 12 N 1.46903 * 109.61649 * 183.11117 * 10 9 8 13 13 C 1.46896 * 110.99967 * 274.60061 * 12 10 9 14 14 C 1.53000 * 109.47305 * 174.72533 * 13 12 10 15 15 C 1.50700 * 115.54797 * 65.16860 * 14 13 12 16 16 H 1.07992 * 119.99873 * 265.06983 * 15 14 13 17 17 C 1.37882 * 119.99989 * 85.06925 * 15 14 13 18 18 N 1.31517 * 119.99804 * 353.18430 * 17 15 14 19 19 Si 1.86798 * 119.99880 * 173.17782 * 17 15 14 20 20 H 1.48493 * 109.47309 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46608 * 120.00341 * 19 17 15 22 22 H 1.48493 * 109.47185 * 239.99862 * 19 17 15 23 23 C 1.52996 * 117.49915 * 279.49601 * 14 13 12 24 24 C 1.53003 * 117.49875 * 210.83776 * 14 13 12 25 25 H 1.09007 * 109.47074 * 59.99808 * 1 2 3 26 26 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46867 * 300.00185 * 1 2 3 28 28 H 1.08997 * 109.46867 * 239.99815 * 2 1 3 29 29 H 1.08998 * 109.46870 * 120.00050 * 2 1 3 30 30 H 1.08996 * 109.48254 * 302.37331 * 6 4 3 31 31 H 1.09010 * 109.48414 * 182.34777 * 6 4 3 32 32 H 1.09000 * 109.48574 * 58.82455 * 8 7 6 33 33 H 1.08995 * 109.48026 * 178.86299 * 8 7 6 34 34 H 1.09002 * 109.52082 * 297.70246 * 9 8 7 35 35 H 1.08999 * 109.52100 * 177.51709 * 9 8 7 36 36 H 1.00893 * 111.00558 * 150.64463 * 12 10 9 37 37 H 1.09004 * 109.47311 * 294.73065 * 13 12 10 38 38 H 1.09005 * 109.47310 * 54.72108 * 13 12 10 39 39 H 0.96999 * 119.99545 * 185.04039 * 18 17 15 40 40 H 1.08997 * 117.49863 * 0.02562 * 23 14 13 41 41 H 1.08999 * 117.49424 * 145.01932 * 23 14 13 42 42 H 1.08996 * 117.49490 * 214.98426 * 24 14 13 43 43 H 1.09007 * 117.49861 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8640 0.6031 0.5165 6 6 3.9415 1.5002 -1.4422 7 8 3.4183 2.6563 -2.0992 8 6 3.8101 3.8941 -1.5021 9 6 3.2943 3.9501 -0.0618 10 6 3.8433 2.7502 0.7160 11 1 4.9307 2.8110 0.7603 12 7 3.2950 2.7531 2.0788 13 6 4.0982 3.6033 2.9676 14 6 3.4253 3.6865 4.3391 15 6 3.3555 2.3926 5.1084 16 1 2.4695 1.7778 5.0517 17 6 4.4229 1.9936 5.8847 18 7 5.5503 2.6700 5.8500 19 14 4.2676 0.4926 6.9857 20 1 2.9080 -0.0873 6.8432 21 1 5.2805 -0.5186 6.5897 22 1 4.4912 0.8900 8.3989 23 6 2.2600 4.6655 4.4960 24 6 3.6130 4.9760 5.1411 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.6143 0.6036 -1.9686 31 1 5.0307 1.5442 -1.4413 32 1 4.8975 3.9696 -1.5019 33 1 3.3883 4.7221 -2.0718 34 1 2.2048 3.9156 -0.0635 35 1 3.6295 4.8740 0.4095 36 1 3.2249 1.8146 2.4424 37 1 5.0947 3.1753 3.0771 38 1 4.1773 4.6030 2.5403 39 1 6.3239 2.3484 6.3389 40 1 1.9726 5.2499 3.6221 41 1 1.4431 4.3737 5.1560 42 1 3.6857 4.8883 6.2250 43 1 4.2164 5.7648 4.6917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602822108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:52 Heat of formation + Delta-G solvation = -89.757977 kcal Electronic energy + Delta-G solvation = -21971.834760 eV Core-core repulsion = 18823.927404 eV Total energy + Delta-G solvation = -3147.907356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86769 -38.65884 -38.04939 -36.13342 -33.97555 -32.48061 -31.99750 -30.49832 -27.75046 -26.63676 -24.47348 -24.11309 -23.38792 -22.80366 -21.11532 -20.81346 -17.97504 -17.65329 -17.43135 -17.13196 -16.67337 -16.51785 -16.03291 -15.71757 -15.47448 -15.16369 -14.76602 -14.58963 -14.02710 -13.89190 -13.40375 -13.27630 -13.13421 -13.01655 -12.90896 -12.83204 -12.56221 -12.34342 -12.20552 -12.06575 -11.99812 -11.57947 -11.41446 -11.25865 -10.90466 -10.71548 -10.41792 -10.08210 -9.87053 -9.06890 -8.09260 -6.20059 1.37304 1.42133 1.52036 2.41895 2.68112 3.00452 3.18616 3.27911 3.67087 3.71940 3.91160 3.96304 4.22963 4.26374 4.28350 4.35219 4.42561 4.48431 4.51772 4.54480 4.59330 4.66917 4.71979 4.76768 4.92637 4.93000 5.00741 5.04491 5.06065 5.09659 5.11231 5.28155 5.32582 5.43328 5.66241 5.69092 5.80094 6.16215 6.38168 6.47109 6.50793 6.65749 6.89084 7.47800 8.98356 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.005838 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.250665 B = 4795.295941 C = 5455.597111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 O -0.374 6.374 4 C 0.057 3.943 5 H 0.069 0.931 6 C 0.045 3.955 7 O -0.388 6.388 8 C 0.064 3.936 9 C -0.130 4.130 10 C 0.085 3.915 11 H 0.046 0.954 12 N -0.664 5.664 13 C 0.124 3.876 14 C 0.028 3.972 15 C -0.501 4.501 16 H 0.050 0.950 17 C 0.027 3.973 18 N -0.908 5.908 19 Si 0.945 3.055 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.285 1.285 23 C -0.179 4.179 24 C -0.167 4.167 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.337 0.663 37 H 0.003 0.997 38 H 0.045 0.955 39 H 0.259 0.741 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -3.296 -14.648 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.293 6.293 4 C -0.001 4.001 5 H 0.087 0.913 6 C -0.032 4.032 7 O -0.307 6.307 8 C -0.013 4.013 9 C -0.169 4.169 10 C -0.025 4.025 11 H 0.064 0.936 12 N -0.295 5.295 13 C -0.005 4.005 14 C 0.028 3.972 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.173 4.173 18 N -0.546 5.546 19 Si 0.772 3.228 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.211 1.211 23 C -0.216 4.216 24 C -0.205 4.205 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.022 0.978 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.446 -2.619 -14.810 15.430 hybrid contribution 1.333 -1.356 1.544 2.449 sum -2.113 -3.975 -13.267 14.010 Atomic orbital electron populations 1.21692 0.93176 1.02982 1.02298 1.22663 0.96374 0.83636 1.00100 1.88043 1.19576 1.26776 1.94921 1.22922 0.83072 0.97425 0.96720 0.91343 1.23145 0.98420 0.89726 0.91928 1.87895 1.74716 1.14275 1.53804 1.22700 0.99251 0.86710 0.92627 1.22037 1.01828 0.97494 0.95516 1.21703 0.95981 0.95204 0.89638 0.93644 1.60346 1.52425 1.16130 1.00600 1.21186 0.92911 0.94802 0.91649 1.18890 0.96282 0.89574 0.92498 1.20694 1.01094 1.05550 1.26538 0.93216 1.25632 0.95263 0.99100 0.97337 1.70104 1.01680 1.39666 1.43175 0.85704 0.78187 0.79974 0.78971 1.19309 1.20612 1.21091 1.22811 0.91523 1.05655 1.01643 1.22457 0.99281 1.00990 0.97812 0.92128 0.89249 0.93294 0.92218 0.93884 0.87323 0.90933 0.92206 0.87242 0.91710 0.91594 0.84454 0.97835 0.93630 0.93238 0.89879 0.91215 0.92572 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 10.28 71.98 0.74 -2.42 16 2 C 0.05 1.18 6.47 71.98 0.47 1.64 16 3 O -0.37 -11.40 9.22 -141.88 -1.31 -12.71 16 4 C 0.06 1.59 2.29 30.69 0.07 1.67 16 5 H 0.07 1.83 7.79 -2.39 -0.02 1.81 16 6 C 0.05 1.04 6.48 72.01 0.47 1.50 16 7 O -0.39 -10.23 10.70 -141.88 -1.52 -11.75 16 8 C 0.06 1.51 6.84 72.02 0.49 2.00 16 9 C -0.13 -3.83 5.47 30.69 0.17 -3.66 16 10 C 0.08 2.72 2.36 45.03 0.11 2.83 16 11 H 0.05 1.47 7.86 -2.39 -0.02 1.45 16 12 N -0.66 -26.26 6.10 -490.96 -3.00 -29.26 16 13 C 0.12 5.53 5.32 86.30 0.46 5.99 16 14 C 0.03 1.39 1.56 -52.93 -0.08 1.31 16 15 C -0.50 -27.02 8.33 25.60 0.21 -26.81 16 16 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 17 C 0.03 1.44 5.39 84.66 0.46 1.90 16 18 N -0.91 -51.27 12.94 21.45 0.28 -51.00 16 19 Si 0.95 42.94 29.55 68.60 2.03 44.97 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 C -0.18 -8.04 9.96 30.62 0.30 -7.74 16 24 C -0.17 -8.05 9.45 30.62 0.29 -7.76 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.18 7.83 -2.39 -0.02 1.17 16 29 H 0.04 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.11 2.09 7.83 -2.39 -0.02 2.07 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.18 7.83 -2.39 -0.02 2.16 16 35 H 0.07 1.94 7.50 -2.39 -0.02 1.92 16 36 H 0.34 14.27 7.93 -89.70 -0.71 13.56 16 37 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 38 H 0.05 1.92 7.38 -2.38 -0.02 1.91 16 39 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 40 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -60.85 345.77 0.89 -59.96 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.25 Total: 29.32 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.15 Total: -29.54 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.72 Total: -80.25 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -2.83 Total: -24.46 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -60.85 0.89 -59.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.793 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds