Wall clock time and date at job start Mon Mar 30 2020 01:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47063 * 2 1 4 4 C 1.42901 * 113.99691 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.52597 * 329.87853 * 4 3 2 6 6 C 1.53096 * 109.52261 * 90.00557 * 4 3 2 7 7 O 1.42902 * 109.41362 * 177.51272 * 6 4 3 8 8 C 1.42898 * 114.09711 * 298.83549 * 7 6 4 9 9 C 1.53097 * 109.41478 * 61.16589 * 8 7 6 10 10 C 1.53178 * 109.52243 * 209.68574 * 4 3 2 11 11 H 1.09001 * 109.54535 * 302.98618 * 10 4 3 12 12 N 1.46903 * 109.53898 * 63.24847 * 10 4 3 13 13 C 1.46907 * 110.99739 * 205.00077 * 12 10 4 14 14 C 1.52999 * 109.46710 * 174.69954 * 13 12 10 15 15 C 1.50700 * 115.55355 * 39.57242 * 14 13 12 16 16 H 1.07996 * 119.99768 * 265.26292 * 15 14 13 17 17 C 1.37881 * 119.99633 * 85.26524 * 15 14 13 18 18 N 1.31503 * 120.00397 * 353.34418 * 17 15 14 19 19 Si 1.86805 * 119.99372 * 173.34247 * 17 15 14 20 20 H 1.48495 * 109.47314 * 60.00116 * 19 17 15 21 21 H 1.48506 * 109.46653 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47376 * 299.99679 * 19 17 15 23 23 C 1.53003 * 117.49588 * 253.86303 * 14 13 12 24 24 C 1.53008 * 117.49658 * 185.24036 * 14 13 12 25 25 H 1.09002 * 109.47074 * 299.99366 * 1 2 3 26 26 H 1.09001 * 109.47227 * 59.99737 * 1 2 3 27 27 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47227 * 120.00263 * 2 1 3 29 29 H 1.09004 * 109.46979 * 239.99858 * 2 1 3 30 30 H 1.09004 * 109.47749 * 297.49181 * 6 4 3 31 31 H 1.08995 * 109.48262 * 57.52594 * 6 4 3 32 32 H 1.09006 * 109.47782 * 181.14088 * 8 7 6 33 33 H 1.09000 * 109.48311 * 301.18138 * 8 7 6 34 34 H 1.08997 * 109.52480 * 62.28798 * 9 8 7 35 35 H 1.08998 * 109.52565 * 182.48548 * 9 8 7 36 36 H 1.00895 * 111.00130 * 81.05284 * 12 10 4 37 37 H 1.09002 * 109.46791 * 294.69207 * 13 12 10 38 38 H 1.08994 * 109.46974 * 54.69757 * 13 12 10 39 39 H 0.97002 * 120.00523 * 185.05949 * 18 17 15 40 40 H 1.08994 * 117.49817 * 359.97438 * 23 14 13 41 41 H 1.09004 * 117.49835 * 145.02662 * 23 14 13 42 42 H 1.08993 * 117.50031 * 214.97545 * 24 14 13 43 43 H 1.08995 * 117.49519 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8640 0.6031 0.5164 6 6 3.9415 1.5004 -1.4421 7 8 5.3602 1.6714 -1.4393 8 6 5.8004 2.8845 -0.8257 9 6 5.3646 2.8999 0.6418 10 6 3.8419 2.7509 0.7156 11 1 3.3681 3.6037 0.2295 12 7 3.4217 2.6888 2.1219 13 6 3.2429 4.0367 2.6779 14 6 2.6803 3.9325 4.0968 15 6 3.2458 2.8189 4.9402 16 1 2.7344 1.8692 4.9939 17 6 4.4160 3.0126 5.6431 18 7 5.1076 4.1186 5.4768 19 14 5.0189 1.7038 6.8319 20 1 5.2483 0.4346 6.0960 21 1 6.2902 2.1502 7.4563 22 1 3.9978 1.4861 7.8879 23 6 1.2085 4.2969 4.3017 24 6 2.3064 5.2357 4.8060 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.6890 0.5659 -1.9433 31 1 3.4760 2.3331 -1.9694 32 1 6.8872 2.9472 -0.8828 33 1 5.3593 3.7354 -1.3449 34 1 5.8375 2.0726 1.1710 35 1 5.6609 3.8435 1.1000 36 1 4.0777 2.1549 2.6720 37 1 4.2047 4.5490 2.7051 38 1 2.5495 4.5987 2.0524 39 1 5.9669 4.2239 5.9144 40 1 0.6413 4.6113 3.4257 41 1 0.6489 3.7311 5.0465 42 1 2.4691 5.2874 5.8825 43 1 2.4618 6.1672 4.2618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:56 Heat of formation + Delta-G solvation = -73.349421 kcal Electronic energy + Delta-G solvation = -21971.748464 eV Core-core repulsion = 18824.552637 eV Total energy + Delta-G solvation = -3147.195828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64422 -37.18041 -36.86469 -34.73615 -31.90020 -31.47027 -30.60231 -29.21706 -25.78285 -24.93772 -23.32261 -22.64471 -22.22716 -20.95565 -20.18964 -18.96480 -16.89544 -16.34742 -15.90908 -15.74598 -15.18160 -14.81572 -14.60232 -14.43404 -13.97080 -13.66449 -13.37933 -13.02740 -12.67134 -12.42686 -12.27680 -12.02385 -11.68143 -11.44454 -11.30064 -11.03025 -11.00066 -10.93683 -10.89823 -10.74419 -10.44951 -10.17172 -10.06123 -9.88809 -9.41913 -8.94765 -8.76717 -8.40748 -8.01833 -7.29048 -6.00549 -4.04623 3.30112 3.35550 3.38957 3.66455 4.12410 4.41077 4.72013 4.94489 5.04860 5.13284 5.22086 5.28155 5.32574 5.37635 5.39965 5.47797 5.52097 5.64615 5.69883 5.76919 5.82982 5.94662 6.05537 6.09102 6.19672 6.24506 6.26628 6.39995 6.48884 6.63292 6.82352 6.87298 7.00742 7.11447 7.18382 7.47745 7.56763 7.58009 7.90897 8.12002 8.43658 8.57661 8.98258 9.59176 11.07423 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.006202 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.083566 B = 4513.517095 C = 5016.864096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.359 6.359 4 C 0.074 3.926 5 H 0.066 0.934 6 C 0.041 3.959 7 O -0.381 6.381 8 C 0.062 3.938 9 C -0.183 4.183 10 C 0.089 3.911 11 H 0.075 0.925 12 N -0.658 5.658 13 C 0.111 3.889 14 C 0.053 3.947 15 C -0.482 4.482 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.886 3.114 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.206 4.206 24 C -0.164 4.164 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.352 0.648 37 H 0.027 0.973 38 H 0.036 0.964 39 H 0.259 0.741 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 -4.356 -12.476 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.014 3.986 5 H 0.084 0.916 6 C -0.037 4.037 7 O -0.300 6.300 8 C -0.015 4.015 9 C -0.223 4.223 10 C -0.023 4.023 11 H 0.093 0.907 12 N -0.289 5.289 13 C -0.018 4.018 14 C 0.052 3.948 15 C -0.520 4.520 16 H 0.078 0.922 17 C -0.134 4.134 18 N -0.520 5.520 19 Si 0.714 3.286 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.244 4.244 24 C -0.202 4.202 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.173 0.827 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.395 -4.282 -12.557 13.481 hybrid contribution 1.360 -0.334 0.978 1.708 sum -1.035 -4.617 -11.578 12.508 Atomic orbital electron populations 1.21706 0.94092 1.01672 1.03130 1.22446 0.95405 0.84538 0.99474 1.87974 1.19683 1.25404 1.94702 1.22696 0.82029 0.99336 0.94495 0.91584 1.23089 0.81491 1.02051 0.97037 1.87903 1.21323 1.41249 1.79533 1.22603 0.99841 0.86605 0.92444 1.23014 0.98056 1.03932 0.97295 1.21637 0.91605 0.96208 0.92808 0.90659 1.60400 1.52615 1.16568 0.99292 1.21365 0.97683 0.87873 0.94921 1.18752 0.90292 0.94174 0.91545 1.20372 1.08008 0.97894 1.25723 0.92163 1.24990 0.96980 0.95122 0.96320 1.69981 1.12799 1.25432 1.43771 0.86766 0.77914 0.82071 0.81876 1.20276 1.21509 1.20300 1.22977 0.93789 1.05977 1.01609 1.22526 1.03837 0.93960 0.99926 0.91400 0.92364 0.91656 0.93173 0.94429 0.89214 0.92578 0.88938 0.93177 0.90724 0.90008 0.82718 0.95529 0.94513 0.93157 0.91870 0.90853 0.90332 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.34 16 2 C 0.06 0.77 6.47 37.16 0.24 1.01 16 3 O -0.36 -5.79 9.92 -35.23 -0.35 -6.14 16 4 C 0.07 1.13 2.45 -26.59 -0.07 1.07 16 5 H 0.07 1.05 7.79 -51.93 -0.40 0.64 16 6 C 0.04 0.54 6.46 37.21 0.24 0.78 16 7 O -0.38 -5.40 10.77 -35.23 -0.38 -5.78 16 8 C 0.06 0.81 6.84 37.21 0.25 1.06 16 9 C -0.18 -2.79 5.40 -26.59 -0.14 -2.94 16 10 C 0.09 1.50 2.23 -67.53 -0.15 1.35 16 11 H 0.08 1.30 7.72 -51.93 -0.40 0.90 16 12 N -0.66 -13.43 5.94 -106.52 -0.63 -14.07 16 13 C 0.11 2.46 5.64 -3.82 -0.02 2.44 16 14 C 0.05 1.30 1.76 -155.66 -0.27 1.03 16 15 C -0.48 -12.78 7.47 -34.44 -0.26 -13.04 16 16 H 0.06 1.64 7.82 -52.49 -0.41 1.22 16 17 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 18 N -0.88 -24.33 12.93 55.43 0.72 -23.61 16 19 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.21 -4.69 9.88 -26.72 -0.26 -4.95 16 24 C -0.16 -3.93 9.46 -26.72 -0.25 -4.19 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 29 H 0.04 0.42 7.94 -51.93 -0.41 0.01 16 30 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 35 H 0.08 1.31 7.69 -51.93 -0.40 0.91 16 36 H 0.35 7.75 7.42 -39.29 -0.29 7.46 16 37 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 38 H 0.04 0.79 7.73 -51.93 -0.40 0.39 16 39 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 40 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 41 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 345.72 15.07 5.21 5.21 Total: -1.00 -28.01 345.72 -8.60 -36.61 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.73 Total: 8.00 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -0.41 Total: -16.00 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.08 Total: -37.68 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.73 Total: -11.93 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.01 -8.60 -36.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.742 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds