Wall clock time and date at job start Mon Mar 30 2020 01:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47003 * 2 1 4 4 C 1.42903 * 114.00140 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.57161 * 29.83864 * 4 3 2 6 6 C 1.53099 * 109.52175 * 269.68851 * 4 3 2 7 7 O 1.42898 * 109.41783 * 182.48395 * 6 4 3 8 8 C 1.42904 * 114.09700 * 61.15377 * 7 6 4 9 9 C 1.53088 * 109.41712 * 298.84581 * 8 7 6 10 10 C 1.53171 * 109.16535 * 57.60521 * 9 8 7 11 11 H 1.09003 * 109.54507 * 62.89089 * 10 9 8 12 12 N 1.46899 * 109.54577 * 183.15169 * 10 9 8 13 13 C 1.46902 * 111.00288 * 275.00402 * 12 10 9 14 14 C 1.52999 * 109.47028 * 185.40955 * 13 12 10 15 15 C 1.50704 * 115.54898 * 65.05258 * 14 13 12 16 16 H 1.07998 * 119.99570 * 265.32127 * 15 14 13 17 17 C 1.37875 * 120.00041 * 85.33227 * 15 14 13 18 18 N 1.31513 * 120.00025 * 353.47020 * 17 15 14 19 19 Si 1.86799 * 119.99855 * 173.47503 * 17 15 14 20 20 H 1.48504 * 109.47394 * 89.99379 * 19 17 15 21 21 H 1.48499 * 109.47024 * 209.99526 * 19 17 15 22 22 H 1.48500 * 109.47397 * 329.99576 * 19 17 15 23 23 C 1.53005 * 117.49952 * 279.37814 * 14 13 12 24 24 C 1.53004 * 117.49810 * 210.72059 * 14 13 12 25 25 H 1.08994 * 109.47049 * 299.99863 * 1 2 3 26 26 H 1.09007 * 109.47315 * 60.00213 * 1 2 3 27 27 H 1.09005 * 109.46776 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47118 * 240.00041 * 2 1 3 29 29 H 1.09001 * 109.47241 * 120.00230 * 2 1 3 30 30 H 1.09004 * 109.47996 * 62.49532 * 6 4 3 31 31 H 1.09000 * 109.48366 * 302.47108 * 6 4 3 32 32 H 1.09000 * 109.48207 * 178.86173 * 8 7 6 33 33 H 1.08998 * 109.49181 * 58.83214 * 8 7 6 34 34 H 1.09009 * 109.52340 * 297.69986 * 9 8 7 35 35 H 1.09003 * 109.52555 * 177.51835 * 9 8 7 36 36 H 1.00903 * 111.00173 * 38.95793 * 12 10 9 37 37 H 1.08997 * 109.46712 * 305.40959 * 13 12 10 38 38 H 1.08994 * 109.46836 * 65.41096 * 13 12 10 39 39 H 0.97002 * 119.99703 * 180.02562 * 18 17 15 40 40 H 1.08996 * 117.49257 * 0.02562 * 23 14 13 41 41 H 1.09002 * 117.49484 * 145.02044 * 23 14 13 42 42 H 1.08996 * 117.49627 * 214.98250 * 24 14 13 43 43 H 1.08999 * 117.49623 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8650 0.6010 -0.5119 6 6 3.9408 1.5082 1.4422 7 8 5.3595 1.6792 1.4391 8 6 5.8000 2.8890 0.8191 9 6 5.3648 2.8964 -0.6486 10 6 3.8422 2.7470 -0.7223 11 1 3.3681 3.6024 -0.2411 12 7 3.4227 2.6774 -2.1284 13 6 3.2543 4.0223 -2.6949 14 6 2.6895 3.9115 -4.1125 15 6 1.2987 3.3402 -4.2152 16 1 1.1607 2.2857 -4.4035 17 6 0.2026 4.1637 -4.0691 18 7 0.3662 5.4192 -3.7136 19 14 -1.5147 3.4959 -4.3759 20 1 -2.0672 2.9502 -3.1101 21 1 -2.3906 4.5898 -4.8673 22 1 -1.4517 2.4169 -5.3942 23 6 3.6711 3.5886 -5.2409 24 6 3.0834 4.9966 -5.1167 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.6880 0.5764 1.9483 31 1 3.4751 2.3437 1.9648 32 1 6.8867 2.9520 0.8763 33 1 5.3588 3.7428 1.3333 34 1 5.8381 2.0663 -1.1732 35 1 5.6614 3.8375 -1.1118 36 1 4.0751 2.1343 -2.6740 37 1 2.5660 4.5947 -2.0732 38 1 4.2201 4.5264 -2.7270 39 1 -0.4051 5.9985 -3.6104 40 1 4.7191 3.4547 -4.9731 41 1 3.3108 2.9632 -6.0577 42 1 2.3369 5.2969 -5.8518 43 1 3.7447 5.7895 -4.7672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602822130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:58 Heat of formation + Delta-G solvation = -70.178666 kcal Electronic energy + Delta-G solvation = -21999.190874 eV Core-core repulsion = 18852.132540 eV Total energy + Delta-G solvation = -3147.058334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69859 -37.15374 -36.94289 -34.80698 -31.77847 -31.40287 -30.69336 -29.19392 -25.82960 -24.87669 -23.34117 -22.76422 -22.21865 -21.02334 -20.22441 -18.91015 -16.94544 -16.36995 -16.07795 -15.72041 -15.18087 -14.84082 -14.56599 -14.38541 -14.04176 -13.55864 -13.32575 -13.14201 -12.67084 -12.55037 -12.25663 -11.96151 -11.79272 -11.44989 -11.20896 -11.06627 -10.98812 -10.88600 -10.83879 -10.61930 -10.39816 -10.18689 -10.11288 -9.92098 -9.43187 -8.93599 -8.73339 -8.29291 -8.00424 -7.45207 -5.88311 -3.88582 3.39556 3.45481 3.48782 3.64916 4.11708 4.53424 4.61451 4.90413 4.93426 5.04810 5.25131 5.27110 5.33095 5.41761 5.43746 5.47351 5.55589 5.60789 5.65478 5.74065 5.79638 5.86840 5.99932 6.07489 6.18693 6.21996 6.27227 6.40658 6.45933 6.54068 6.67283 6.77342 6.94078 7.06490 7.15926 7.51350 7.63325 7.64714 7.99626 8.04936 8.21258 8.62991 9.09343 9.74011 11.21899 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.006924 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.372993 B = 4042.693570 C = 5348.323643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.075 3.925 5 H 0.064 0.936 6 C 0.039 3.961 7 O -0.381 6.381 8 C 0.062 3.938 9 C -0.184 4.184 10 C 0.090 3.910 11 H 0.083 0.917 12 N -0.652 5.652 13 C 0.111 3.889 14 C 0.055 3.945 15 C -0.465 4.465 16 H 0.058 0.942 17 C 0.068 3.932 18 N -0.886 5.886 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.217 4.217 24 C -0.159 4.159 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.327 0.673 37 H 0.076 0.924 38 H -0.008 1.008 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -6.970 8.922 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.271 6.271 4 C 0.015 3.985 5 H 0.082 0.918 6 C -0.038 4.038 7 O -0.300 6.300 8 C -0.015 4.015 9 C -0.224 4.224 10 C -0.022 4.022 11 H 0.101 0.899 12 N -0.279 5.279 13 C -0.018 4.018 14 C 0.054 3.946 15 C -0.503 4.503 16 H 0.076 0.924 17 C -0.133 4.133 18 N -0.525 5.525 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.201 1.201 23 C -0.254 4.254 24 C -0.197 4.197 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.010 0.990 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.869 -6.836 9.168 13.340 hybrid contribution -0.033 0.058 -0.418 0.423 sum 6.836 -6.778 8.750 13.009 Atomic orbital electron populations 1.21719 0.94011 1.01562 1.03544 1.22425 0.95574 0.84443 0.99132 1.88063 1.19109 1.25319 1.94587 1.22638 0.82594 0.98891 0.94350 0.91826 1.23130 0.81222 1.02281 0.97183 1.87899 1.21546 1.41354 1.79211 1.22568 0.99759 0.87024 0.92138 1.23037 0.98306 1.03236 0.97807 1.21667 0.91219 0.97048 0.92241 0.89927 1.60242 1.51428 1.16786 0.99477 1.21562 0.95455 0.87184 0.97567 1.18819 0.93275 0.97072 0.85437 1.20259 0.88048 0.94113 1.47889 0.92404 1.24902 0.98535 0.94890 0.94987 1.70005 1.29789 1.05463 1.47196 0.86690 0.84969 0.78426 0.78433 1.20713 1.21573 1.20115 1.22990 0.96865 1.00429 1.05125 1.22516 1.01848 0.90031 1.05340 0.92314 0.91067 0.91740 0.93348 0.94584 0.89080 0.92363 0.88974 0.92969 0.90972 0.90399 0.85512 0.90545 0.99011 0.93436 0.92315 0.90592 0.90098 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 10.28 37.16 0.38 -1.71 16 2 C 0.06 0.88 6.47 37.16 0.24 1.12 16 3 O -0.35 -6.17 9.92 -35.23 -0.35 -6.52 16 4 C 0.07 1.14 2.45 -26.59 -0.07 1.08 16 5 H 0.06 0.96 7.79 -51.93 -0.40 0.55 16 6 C 0.04 0.52 6.47 37.21 0.24 0.76 16 7 O -0.38 -5.13 10.77 -35.23 -0.38 -5.51 16 8 C 0.06 0.74 6.84 37.20 0.25 0.99 16 9 C -0.18 -2.44 5.40 -26.60 -0.14 -2.59 16 10 C 0.09 1.47 2.23 -67.54 -0.15 1.32 16 11 H 0.08 1.49 7.73 -51.93 -0.40 1.09 16 12 N -0.65 -12.72 6.06 -106.54 -0.65 -13.37 16 13 C 0.11 2.46 5.34 -3.82 -0.02 2.44 16 14 C 0.05 1.34 1.55 -155.65 -0.24 1.10 16 15 C -0.47 -12.82 8.74 -34.44 -0.30 -13.12 16 16 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 17 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 18 N -0.89 -25.53 12.92 55.43 0.72 -24.81 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.22 -4.72 9.96 -26.69 -0.27 -4.99 16 24 C -0.16 -3.77 9.42 -26.69 -0.25 -4.02 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.69 8.09 -51.92 -0.42 0.27 16 29 H 0.04 0.43 7.96 -51.93 -0.41 0.02 16 30 H 0.09 1.06 7.96 -51.93 -0.41 0.65 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.93 8.09 -51.92 -0.42 0.51 16 35 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 36 H 0.33 6.01 8.50 -39.29 -0.33 5.68 16 37 H 0.08 1.95 7.93 -51.93 -0.41 1.53 16 38 H -0.01 -0.17 7.61 -51.93 -0.40 -0.56 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -29.61 347.92 -8.64 -38.24 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.78 Total: 5.73 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.42 Total: -15.80 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.07 Total: -38.18 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.73 Total: -12.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.61 -8.64 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.935 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds