Wall clock time and date at job start Mon Mar 30 2020 01:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47003 * 2 1 4 4 C 1.42903 * 114.00140 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.57161 * 29.83864 * 4 3 2 6 6 C 1.53099 * 109.52175 * 269.68851 * 4 3 2 7 7 O 1.42898 * 109.41783 * 182.48395 * 6 4 3 8 8 C 1.42904 * 114.09700 * 61.15377 * 7 6 4 9 9 C 1.53088 * 109.41712 * 298.84581 * 8 7 6 10 10 C 1.53171 * 109.16535 * 57.60521 * 9 8 7 11 11 H 1.09003 * 109.54507 * 62.89089 * 10 9 8 12 12 N 1.46899 * 109.54577 * 183.15169 * 10 9 8 13 13 C 1.46902 * 111.00288 * 275.00402 * 12 10 9 14 14 C 1.52999 * 109.47028 * 185.40955 * 13 12 10 15 15 C 1.50704 * 115.54898 * 65.05258 * 14 13 12 16 16 H 1.07998 * 119.99570 * 265.32127 * 15 14 13 17 17 C 1.37875 * 120.00041 * 85.33227 * 15 14 13 18 18 N 1.31513 * 120.00025 * 353.47020 * 17 15 14 19 19 Si 1.86799 * 119.99855 * 173.47503 * 17 15 14 20 20 H 1.48504 * 109.47394 * 89.99379 * 19 17 15 21 21 H 1.48499 * 109.47024 * 209.99526 * 19 17 15 22 22 H 1.48500 * 109.47397 * 329.99576 * 19 17 15 23 23 C 1.53005 * 117.49952 * 279.37814 * 14 13 12 24 24 C 1.53004 * 117.49810 * 210.72059 * 14 13 12 25 25 H 1.08994 * 109.47049 * 299.99863 * 1 2 3 26 26 H 1.09007 * 109.47315 * 60.00213 * 1 2 3 27 27 H 1.09005 * 109.46776 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47118 * 240.00041 * 2 1 3 29 29 H 1.09001 * 109.47241 * 120.00230 * 2 1 3 30 30 H 1.09004 * 109.47996 * 62.49532 * 6 4 3 31 31 H 1.09000 * 109.48366 * 302.47108 * 6 4 3 32 32 H 1.09000 * 109.48207 * 178.86173 * 8 7 6 33 33 H 1.08998 * 109.49181 * 58.83214 * 8 7 6 34 34 H 1.09009 * 109.52340 * 297.69986 * 9 8 7 35 35 H 1.09003 * 109.52555 * 177.51835 * 9 8 7 36 36 H 1.00903 * 111.00173 * 38.95793 * 12 10 9 37 37 H 1.08997 * 109.46712 * 305.40959 * 13 12 10 38 38 H 1.08994 * 109.46836 * 65.41096 * 13 12 10 39 39 H 0.97002 * 119.99703 * 180.02562 * 18 17 15 40 40 H 1.08996 * 117.49257 * 0.02562 * 23 14 13 41 41 H 1.09002 * 117.49484 * 145.02044 * 23 14 13 42 42 H 1.08996 * 117.49627 * 214.98250 * 24 14 13 43 43 H 1.08999 * 117.49623 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8650 0.6010 -0.5119 6 6 3.9408 1.5082 1.4422 7 8 5.3595 1.6792 1.4391 8 6 5.8000 2.8890 0.8191 9 6 5.3648 2.8964 -0.6486 10 6 3.8422 2.7470 -0.7223 11 1 3.3681 3.6024 -0.2411 12 7 3.4227 2.6774 -2.1284 13 6 3.2543 4.0223 -2.6949 14 6 2.6895 3.9115 -4.1125 15 6 1.2987 3.3402 -4.2152 16 1 1.1607 2.2857 -4.4035 17 6 0.2026 4.1637 -4.0691 18 7 0.3662 5.4192 -3.7136 19 14 -1.5147 3.4959 -4.3759 20 1 -2.0672 2.9502 -3.1101 21 1 -2.3906 4.5898 -4.8673 22 1 -1.4517 2.4169 -5.3942 23 6 3.6711 3.5886 -5.2409 24 6 3.0834 4.9966 -5.1167 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.6880 0.5764 1.9483 31 1 3.4751 2.3437 1.9648 32 1 6.8867 2.9520 0.8763 33 1 5.3588 3.7428 1.3333 34 1 5.8381 2.0663 -1.1732 35 1 5.6614 3.8375 -1.1118 36 1 4.0751 2.1343 -2.6740 37 1 2.5660 4.5947 -2.0732 38 1 4.2201 4.5264 -2.7270 39 1 -0.4051 5.9985 -3.6104 40 1 4.7191 3.4547 -4.9731 41 1 3.3108 2.9632 -6.0577 42 1 2.3369 5.2969 -5.8518 43 1 3.7447 5.7895 -4.7672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602822130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:58 Heat of formation + Delta-G solvation = -89.754639 kcal Electronic energy + Delta-G solvation = -22000.039752 eV Core-core repulsion = 18852.132540 eV Total energy + Delta-G solvation = -3147.907211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84947 -38.70462 -38.30930 -36.26057 -33.89232 -32.55847 -31.94719 -30.36038 -27.72258 -26.56974 -24.47825 -24.07505 -23.39104 -22.83678 -21.49051 -20.80625 -18.29078 -17.80620 -17.44170 -16.96582 -16.59025 -16.37949 -16.02794 -15.85936 -15.40021 -15.07444 -14.90957 -14.49171 -14.07530 -13.88321 -13.55354 -13.31976 -13.16477 -13.07324 -12.86951 -12.70062 -12.48290 -12.35842 -12.25567 -12.13771 -12.00778 -11.93596 -11.50007 -11.21733 -10.98442 -10.71453 -10.37556 -10.12760 -9.87563 -8.96856 -8.02489 -6.07194 1.40665 1.42436 1.50698 2.48214 2.58978 3.03915 3.21199 3.28325 3.63132 3.76699 3.87974 3.98677 4.11143 4.18766 4.22921 4.37056 4.39740 4.41118 4.50897 4.52451 4.58859 4.66418 4.73242 4.74967 4.82871 4.83354 4.93814 4.99751 5.01963 5.07965 5.09179 5.14179 5.29139 5.30453 5.64896 5.77261 5.89878 6.05395 6.35977 6.47116 6.54460 6.78249 6.95122 7.57402 9.06687 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.006924 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.372993 B = 4042.693570 C = 5348.323643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.387 6.387 4 C 0.076 3.924 5 H 0.067 0.933 6 C 0.047 3.953 7 O -0.386 6.386 8 C 0.062 3.938 9 C -0.174 4.174 10 C 0.087 3.913 11 H 0.058 0.942 12 N -0.665 5.665 13 C 0.131 3.869 14 C 0.026 3.974 15 C -0.475 4.475 16 H 0.044 0.956 17 C 0.022 3.978 18 N -0.912 5.912 19 Si 0.940 3.060 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.270 1.270 23 C -0.186 4.186 24 C -0.167 4.167 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.120 0.880 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.335 0.665 37 H 0.034 0.966 38 H 0.009 0.991 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 -8.357 9.646 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.307 6.307 4 C 0.017 3.983 5 H 0.085 0.915 6 C -0.031 4.031 7 O -0.305 6.305 8 C -0.015 4.015 9 C -0.213 4.213 10 C -0.024 4.024 11 H 0.076 0.924 12 N -0.294 5.294 13 C 0.002 3.998 14 C 0.025 3.975 15 C -0.513 4.513 16 H 0.062 0.938 17 C -0.176 4.176 18 N -0.552 5.552 19 Si 0.767 3.233 20 H -0.209 1.209 21 H -0.211 1.211 22 H -0.195 1.195 23 C -0.224 4.224 24 C -0.205 4.205 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.137 0.863 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.316 -8.239 9.891 15.325 hybrid contribution -0.470 0.462 -0.645 0.922 sum 7.846 -7.777 9.245 14.406 Atomic orbital electron populations 1.21741 0.93984 1.03029 1.01877 1.22602 0.95678 0.83389 1.00374 1.88026 1.20412 1.27342 1.94877 1.22689 0.81830 0.98073 0.95692 0.91468 1.23073 0.81200 1.03194 0.95605 1.87902 1.21353 1.42021 1.79226 1.22707 1.01362 0.86670 0.90770 1.22918 0.95497 1.03631 0.99260 1.21723 0.93433 0.97005 0.90194 0.92412 1.60110 1.52735 1.15438 1.01101 1.21126 0.94928 0.88308 0.95481 1.18923 0.93072 0.98247 0.87244 1.20487 0.90045 0.93500 1.47248 0.93777 1.25532 1.01692 0.95239 0.95165 1.70105 1.30384 1.06327 1.48336 0.85845 0.81305 0.78000 0.78187 1.20867 1.21143 1.19494 1.22968 0.97852 0.98365 1.03175 1.22436 1.01973 0.91297 1.04787 0.92091 0.94505 0.88740 0.93733 0.91519 0.87160 0.92693 0.86253 0.92673 0.90113 0.90254 0.84618 0.94737 0.97308 0.93677 0.89116 0.90753 0.92560 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 10.28 71.98 0.74 -3.28 16 2 C 0.06 1.54 6.47 71.98 0.47 2.00 16 3 O -0.39 -13.48 9.92 -148.98 -1.48 -14.96 16 4 C 0.08 2.25 2.45 30.68 0.08 2.33 16 5 H 0.07 1.91 7.79 -2.39 -0.02 1.89 16 6 C 0.05 1.14 6.47 72.02 0.47 1.61 16 7 O -0.39 -9.33 10.77 -148.98 -1.60 -10.94 16 8 C 0.06 1.30 6.84 72.01 0.49 1.79 16 9 C -0.17 -4.26 5.40 30.68 0.17 -4.09 16 10 C 0.09 2.83 2.23 45.03 0.10 2.93 16 11 H 0.06 2.14 7.73 -2.39 -0.02 2.12 16 12 N -0.66 -25.83 6.06 -490.98 -2.97 -28.81 16 13 C 0.13 5.85 5.34 86.30 0.46 6.31 16 14 C 0.03 1.27 1.55 -52.92 -0.08 1.19 16 15 C -0.47 -26.61 8.74 25.60 0.22 -26.39 16 16 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 17 C 0.02 1.27 5.39 84.65 0.46 1.73 16 18 N -0.91 -53.86 12.92 21.45 0.28 -53.58 16 19 Si 0.94 45.61 29.54 68.60 2.03 47.64 16 20 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 23 C -0.19 -7.83 9.96 30.62 0.30 -7.52 16 24 C -0.17 -7.87 9.42 30.62 0.29 -7.58 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.04 1.24 8.09 -2.38 -0.02 1.22 16 29 H 0.07 1.42 7.96 -2.39 -0.02 1.40 16 30 H 0.11 2.26 7.96 -2.38 -0.02 2.24 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.86 8.09 -2.38 -0.02 1.84 16 35 H 0.08 1.93 7.66 -2.39 -0.02 1.91 16 36 H 0.34 11.91 8.50 -89.69 -0.76 11.15 16 37 H 0.03 1.81 7.93 -2.39 -0.02 1.79 16 38 H 0.01 0.36 7.61 -2.39 -0.02 0.35 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -64.59 347.92 0.61 -63.98 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.20 Total: 25.65 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 4.16 Total: -28.98 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.70 Total: -82.39 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -3.08 Total: -25.90 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -64.59 0.61 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602822130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.771 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds