Wall clock time and date at job start Mon Mar 30 2020 01:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47062 * 2 1 4 4 C 1.42901 * 113.99935 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46999 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.50744 * 54.91301 * 5 4 3 7 7 C 1.53099 * 109.50662 * 175.00405 * 5 4 3 8 8 N 1.47018 * 109.25519 * 176.78360 * 7 5 4 9 9 C 1.46899 * 110.99587 * 177.60554 * 8 7 5 10 10 C 1.53002 * 109.47052 * 176.19214 * 9 8 7 11 11 C 1.50710 * 115.54805 * 54.30475 * 10 9 8 12 12 H 1.07997 * 119.99633 * 219.28936 * 11 10 9 13 13 C 1.37877 * 119.99729 * 39.56254 * 11 10 9 14 14 N 1.31521 * 120.00229 * 8.65363 * 13 11 10 15 15 Si 1.86795 * 119.99804 * 188.64960 * 13 11 10 16 16 H 1.48499 * 109.47025 * 64.98632 * 15 13 11 17 17 H 1.48507 * 109.47180 * 184.98189 * 15 13 11 18 18 H 1.48497 * 109.47243 * 304.97966 * 15 13 11 19 19 C 1.52996 * 117.51993 * 200.00655 * 10 9 8 20 20 C 1.52994 * 117.50091 * 268.63762 * 10 9 8 21 21 C 1.47018 * 110.75112 * 301.38275 * 8 7 5 22 22 C 1.53090 * 109.25831 * 58.61700 * 21 8 7 23 23 O 1.43013 * 109.26062 * 303.14873 * 22 21 8 24 24 H 1.08994 * 109.46922 * 299.99837 * 1 2 3 25 25 H 1.09000 * 109.47000 * 60.00158 * 1 2 3 26 26 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47647 * 239.99777 * 2 1 3 28 28 H 1.09000 * 109.47000 * 119.99842 * 2 1 3 29 29 H 1.09003 * 109.46907 * 60.00157 * 4 3 2 30 30 H 1.09003 * 109.47282 * 299.99919 * 4 3 2 31 31 H 1.09001 * 109.50565 * 56.84777 * 7 5 4 32 32 H 1.08997 * 109.53674 * 296.73843 * 7 5 4 33 33 H 1.09003 * 109.46959 * 56.19594 * 9 8 7 34 34 H 1.09000 * 109.46996 * 296.19326 * 9 8 7 35 35 H 0.96991 * 119.99927 * 174.90607 * 14 13 11 36 36 H 1.08996 * 117.49740 * 214.97309 * 19 10 9 37 37 H 1.09001 * 117.49813 * 359.97438 * 19 10 9 38 38 H 1.09003 * 117.49951 * 359.97152 * 20 10 9 39 39 H 1.08997 * 117.50135 * 144.99547 * 20 10 9 40 40 H 1.09002 * 109.50456 * 178.55731 * 21 8 7 41 41 H 1.09007 * 109.50254 * 298.68159 * 21 8 7 42 42 H 1.09007 * 109.50380 * 183.21422 * 22 21 8 43 43 H 1.08996 * 109.54426 * 63.11309 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 0.0012 6 1 3.3483 3.4421 0.8419 7 6 5.3462 3.0617 0.1275 8 7 5.7258 4.4799 0.0500 9 6 7.1748 4.6472 0.2241 10 6 7.5433 6.1211 0.0432 11 6 6.7879 7.0916 0.9142 12 1 6.4685 8.0419 0.5126 13 6 6.5096 6.7686 2.2254 14 7 7.0453 5.6962 2.7665 15 14 5.3717 7.8542 3.2333 16 1 4.0051 7.8116 2.6538 17 1 5.3309 7.3627 4.6341 18 1 5.8745 9.2513 3.2136 19 6 9.0018 6.4504 -0.2812 20 6 7.9282 6.5856 -1.3628 21 6 5.2757 5.0710 -1.2187 22 6 3.7557 4.9275 -1.3315 23 8 3.4029 3.5459 -1.2228 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8333 0.9768 0.8908 31 1 5.8244 2.5120 -0.6832 32 1 5.6669 2.6508 1.0847 33 1 7.7015 4.0472 -0.5180 34 1 7.4605 4.3213 1.2242 35 1 6.9094 5.5089 3.7084 36 1 9.4150 7.3689 0.1354 37 1 9.6992 5.6169 -0.3653 38 1 7.9193 5.8411 -2.1589 39 1 7.6351 7.5931 -1.6579 40 1 5.5446 6.1270 -1.2438 41 1 5.7530 4.5534 -2.0509 42 1 3.4244 5.3130 -2.2958 43 1 3.2760 5.4899 -0.5305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602914275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:13 Heat of formation + Delta-G solvation = -57.741482 kcal Electronic energy + Delta-G solvation = -21909.202715 eV Core-core repulsion = 18762.683698 eV Total energy + Delta-G solvation = -3146.519017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.28228 -37.78190 -36.75066 -34.00859 -32.31718 -32.00271 -30.56539 -28.05365 -25.97568 -25.14750 -23.48410 -22.79487 -21.92510 -21.12344 -19.75453 -18.87279 -16.62855 -16.47982 -16.28534 -15.45373 -15.30217 -14.71227 -14.62902 -14.26484 -13.88801 -13.70070 -13.40958 -13.15341 -12.71175 -12.65687 -12.52858 -11.77675 -11.47214 -11.35020 -11.28194 -11.19457 -10.93350 -10.81932 -10.68779 -10.51302 -10.43291 -10.05526 -9.99407 -9.56469 -9.40522 -9.01094 -8.95646 -8.57102 -7.99195 -7.28227 -5.91220 -3.94408 3.36836 3.41331 3.45455 3.63496 4.12342 4.47277 4.69548 4.95883 5.06453 5.17054 5.26119 5.31968 5.36142 5.41744 5.55849 5.60182 5.65780 5.69606 5.76591 5.82024 5.89271 5.98990 6.02184 6.10455 6.17112 6.31112 6.32001 6.52413 6.56925 6.65662 6.67994 6.75229 6.95216 7.15552 7.25112 7.33767 7.57823 7.64590 8.01036 8.07067 8.14316 8.52337 8.99094 9.66659 11.12258 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.005428 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.188341 B = 5156.871298 C = 5801.042535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.074 3.926 5 C 0.099 3.901 6 H 0.073 0.927 7 C 0.031 3.969 8 N -0.496 5.496 9 C 0.103 3.897 10 C 0.064 3.936 11 C -0.481 4.481 12 H 0.054 0.946 13 C 0.090 3.910 14 N -0.875 5.875 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.281 1.281 19 C -0.202 4.202 20 C -0.219 4.219 21 C 0.023 3.977 22 C 0.064 3.936 23 O -0.383 6.383 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.081 0.919 33 H -0.014 1.014 34 H 0.116 0.884 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.020 0.980 42 H 0.088 0.912 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.974 -9.551 -4.971 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.299 6.299 4 C -0.003 4.003 5 C 0.040 3.960 6 H 0.091 0.909 7 C -0.098 4.098 8 N -0.220 5.220 9 C -0.023 4.023 10 C 0.064 3.936 11 C -0.518 4.518 12 H 0.073 0.927 13 C -0.114 4.114 14 N -0.512 5.512 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.207 1.207 19 C -0.241 4.241 20 C -0.256 4.256 21 C -0.106 4.106 22 C -0.013 4.013 23 O -0.302 6.302 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.004 0.996 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.038 0.962 42 H 0.106 0.894 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.483 -9.389 -4.553 12.840 hybrid contribution 0.345 0.074 0.015 0.353 sum -7.138 -9.315 -4.539 12.582 Atomic orbital electron populations 1.21727 0.93936 1.01874 1.03220 1.22431 0.95550 0.84321 0.99771 1.87963 1.20914 1.25697 1.95352 1.22475 0.81464 0.95848 1.00525 1.22041 0.93868 0.91641 0.88402 0.90907 1.22564 0.94237 0.91851 1.01162 1.62005 1.16959 1.11033 1.32002 1.21793 0.83755 0.95278 1.01505 1.18921 0.91626 0.92785 0.90293 1.20240 1.35140 1.01019 0.95422 0.92741 1.24735 0.94720 0.94451 0.97471 1.69761 1.43666 1.25922 1.11881 0.86716 0.82075 0.80386 0.79018 1.20180 1.21500 1.20655 1.22953 0.94706 1.01422 1.05004 1.22983 1.08318 1.00649 0.93682 1.22796 0.94572 1.02735 0.90467 1.22695 0.95078 0.82071 1.01429 1.87919 1.79558 1.24585 1.38151 0.91871 0.91829 0.91387 0.93641 0.93643 0.92845 0.91909 0.95545 0.90024 0.99553 0.86602 0.93128 0.90381 0.92029 0.91903 0.90730 0.87817 0.96190 0.89437 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.06 0.63 6.66 37.16 0.25 0.87 16 3 O -0.38 -5.77 10.31 -39.73 -0.41 -6.18 16 4 C 0.07 1.07 5.60 37.16 0.21 1.28 16 5 C 0.10 1.73 3.09 -26.68 -0.08 1.65 16 6 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 7 C 0.03 0.57 4.95 -3.71 -0.02 0.55 16 8 N -0.50 -10.65 4.52 -234.30 -1.06 -11.71 16 9 C 0.10 2.38 4.33 -3.82 -0.02 2.37 16 10 C 0.06 1.54 1.01 -155.66 -0.16 1.39 16 11 C -0.48 -12.70 8.19 -34.44 -0.28 -12.98 16 12 H 0.05 1.45 7.83 -52.49 -0.41 1.04 16 13 C 0.09 2.38 5.27 -17.82 -0.09 2.29 16 14 N -0.88 -23.63 10.89 55.43 0.60 -23.03 16 15 Si 0.89 21.11 29.55 -169.99 -5.02 16.08 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.20 -4.56 9.96 -26.74 -0.27 -4.83 16 20 C -0.22 -4.67 8.21 -26.74 -0.22 -4.89 16 21 C 0.02 0.45 4.84 -3.71 -0.02 0.43 16 22 C 0.06 1.15 7.01 37.20 0.26 1.41 16 23 O -0.38 -7.13 10.44 -39.73 -0.41 -7.55 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 33 H -0.01 -0.30 8.08 -51.93 -0.42 -0.72 16 34 H 0.12 2.95 6.06 -51.93 -0.31 2.63 16 35 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 36 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.10 2.20 5.55 -51.93 -0.29 1.91 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 340.68 15.07 5.13 5.13 Total: -1.00 -28.28 340.68 -8.98 -37.26 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.76 Total: 1.50 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.06 Total: -11.51 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.45 Total: -34.73 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.82 Total: -13.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.28 -8.98 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602914275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.481 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds