Wall clock time and date at job start Mon Mar 30 2020 01:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47062 * 2 1 4 4 C 1.42901 * 113.99935 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46999 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.50744 * 54.91301 * 5 4 3 7 7 C 1.53099 * 109.50662 * 175.00405 * 5 4 3 8 8 N 1.47018 * 109.25519 * 176.78360 * 7 5 4 9 9 C 1.46899 * 110.99587 * 177.60554 * 8 7 5 10 10 C 1.53002 * 109.47052 * 176.19214 * 9 8 7 11 11 C 1.50710 * 115.54805 * 54.30475 * 10 9 8 12 12 H 1.07997 * 119.99633 * 219.28936 * 11 10 9 13 13 C 1.37877 * 119.99729 * 39.56254 * 11 10 9 14 14 N 1.31521 * 120.00229 * 8.65363 * 13 11 10 15 15 Si 1.86795 * 119.99804 * 188.64960 * 13 11 10 16 16 H 1.48499 * 109.47025 * 64.98632 * 15 13 11 17 17 H 1.48507 * 109.47180 * 184.98189 * 15 13 11 18 18 H 1.48497 * 109.47243 * 304.97966 * 15 13 11 19 19 C 1.52996 * 117.51993 * 200.00655 * 10 9 8 20 20 C 1.52994 * 117.50091 * 268.63762 * 10 9 8 21 21 C 1.47018 * 110.75112 * 301.38275 * 8 7 5 22 22 C 1.53090 * 109.25831 * 58.61700 * 21 8 7 23 23 O 1.43013 * 109.26062 * 303.14873 * 22 21 8 24 24 H 1.08994 * 109.46922 * 299.99837 * 1 2 3 25 25 H 1.09000 * 109.47000 * 60.00158 * 1 2 3 26 26 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47647 * 239.99777 * 2 1 3 28 28 H 1.09000 * 109.47000 * 119.99842 * 2 1 3 29 29 H 1.09003 * 109.46907 * 60.00157 * 4 3 2 30 30 H 1.09003 * 109.47282 * 299.99919 * 4 3 2 31 31 H 1.09001 * 109.50565 * 56.84777 * 7 5 4 32 32 H 1.08997 * 109.53674 * 296.73843 * 7 5 4 33 33 H 1.09003 * 109.46959 * 56.19594 * 9 8 7 34 34 H 1.09000 * 109.46996 * 296.19326 * 9 8 7 35 35 H 0.96991 * 119.99927 * 174.90607 * 14 13 11 36 36 H 1.08996 * 117.49740 * 214.97309 * 19 10 9 37 37 H 1.09001 * 117.49813 * 359.97438 * 19 10 9 38 38 H 1.09003 * 117.49951 * 359.97152 * 20 10 9 39 39 H 1.08997 * 117.50135 * 144.99547 * 20 10 9 40 40 H 1.09002 * 109.50456 * 178.55731 * 21 8 7 41 41 H 1.09007 * 109.50254 * 298.68159 * 21 8 7 42 42 H 1.09007 * 109.50380 * 183.21422 * 22 21 8 43 43 H 1.08996 * 109.54426 * 63.11309 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 0.0012 6 1 3.3483 3.4421 0.8419 7 6 5.3462 3.0617 0.1275 8 7 5.7258 4.4799 0.0500 9 6 7.1748 4.6472 0.2241 10 6 7.5433 6.1211 0.0432 11 6 6.7879 7.0916 0.9142 12 1 6.4685 8.0419 0.5126 13 6 6.5096 6.7686 2.2254 14 7 7.0453 5.6962 2.7665 15 14 5.3717 7.8542 3.2333 16 1 4.0051 7.8116 2.6538 17 1 5.3309 7.3627 4.6341 18 1 5.8745 9.2513 3.2136 19 6 9.0018 6.4504 -0.2812 20 6 7.9282 6.5856 -1.3628 21 6 5.2757 5.0710 -1.2187 22 6 3.7557 4.9275 -1.3315 23 8 3.4029 3.5459 -1.2228 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9765 -0.8892 30 1 3.8333 0.9768 0.8908 31 1 5.8244 2.5120 -0.6832 32 1 5.6669 2.6508 1.0847 33 1 7.7015 4.0472 -0.5180 34 1 7.4605 4.3213 1.2242 35 1 6.9094 5.5089 3.7084 36 1 9.4150 7.3689 0.1354 37 1 9.6992 5.6169 -0.3653 38 1 7.9193 5.8411 -2.1589 39 1 7.6351 7.5931 -1.6579 40 1 5.5446 6.1270 -1.2438 41 1 5.7530 4.5534 -2.0509 42 1 3.4244 5.3130 -2.2958 43 1 3.2760 5.4899 -0.5305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602914275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:13 Heat of formation + Delta-G solvation = -75.077635 kcal Electronic energy + Delta-G solvation = -21909.954467 eV Core-core repulsion = 18762.683698 eV Total energy + Delta-G solvation = -3147.270769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.75355 -39.03084 -38.31783 -35.62545 -34.01247 -33.48542 -31.62640 -29.60174 -27.68255 -26.85514 -25.04231 -23.64630 -23.37190 -22.84834 -21.24847 -20.75131 -18.14899 -17.74929 -17.61926 -16.96157 -16.60585 -16.48794 -15.98781 -15.85975 -15.50272 -15.42392 -14.68638 -14.44944 -14.24506 -14.08340 -13.41808 -13.33802 -13.18037 -12.81365 -12.78610 -12.56557 -12.39668 -12.28700 -12.26568 -12.15174 -11.97597 -11.87090 -11.47027 -11.19254 -10.89332 -10.63385 -10.56127 -10.34678 -9.89895 -8.90993 -7.91874 -5.99795 1.45113 1.49430 1.53116 2.50497 2.56430 2.76186 3.10913 3.33356 3.72341 3.99499 4.00434 4.08864 4.18060 4.20244 4.29123 4.31851 4.39897 4.45194 4.47455 4.51284 4.57086 4.63417 4.70158 4.73982 4.81501 4.88774 4.94257 4.95519 5.04456 5.05044 5.12296 5.17501 5.27702 5.39887 5.55545 5.66796 6.05040 6.17710 6.27282 6.36054 6.49259 6.60573 6.98013 7.62301 9.09076 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.005428 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.188341 B = 5156.871298 C = 5801.042535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.408 6.408 4 C 0.080 3.920 5 C 0.100 3.900 6 H 0.051 0.949 7 C 0.035 3.965 8 N -0.518 5.518 9 C 0.116 3.884 10 C 0.038 3.962 11 C -0.493 4.493 12 H 0.043 0.957 13 C 0.054 3.946 14 N -0.892 5.892 15 Si 0.936 3.064 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.205 4.205 20 C -0.193 4.193 21 C 0.029 3.971 22 C 0.068 3.932 23 O -0.388 6.388 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.080 0.920 33 H -0.007 1.007 34 H 0.089 0.911 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.026 0.974 42 H 0.117 0.883 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 -10.580 -5.868 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.328 6.328 4 C 0.003 3.997 5 C 0.042 3.958 6 H 0.069 0.931 7 C -0.094 4.094 8 N -0.242 5.242 9 C -0.012 4.012 10 C 0.038 3.962 11 C -0.530 4.530 12 H 0.061 0.939 13 C -0.147 4.147 14 N -0.530 5.530 15 Si 0.763 3.237 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.243 4.243 20 C -0.231 4.231 21 C -0.099 4.099 22 C -0.009 4.009 23 O -0.307 6.307 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.011 0.989 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.135 0.865 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.108 -10.418 -5.457 14.284 hybrid contribution 0.533 0.388 0.275 0.714 sum -7.575 -10.030 -5.182 13.595 Atomic orbital electron populations 1.21760 0.92927 1.03412 1.02485 1.22707 0.96436 0.82703 1.01012 1.87921 1.20992 1.28309 1.95602 1.22408 0.81722 0.93600 1.01958 1.22060 0.92913 0.93487 0.87330 0.93106 1.22552 0.94999 0.90338 1.01461 1.61909 1.16022 1.13052 1.33266 1.21500 0.84962 0.94633 1.00063 1.18978 0.92311 0.93007 0.91949 1.20419 1.35450 1.01121 0.96009 0.93866 1.25229 0.95711 0.95477 0.98305 1.69878 1.44503 1.26802 1.11793 0.85988 0.80433 0.79336 0.77908 1.20562 1.21357 1.20313 1.22950 0.94423 1.01439 1.05525 1.22933 1.06138 1.01104 0.92888 1.22712 0.95711 1.01613 0.89874 1.22725 0.93739 0.81950 1.02488 1.87923 1.79583 1.24700 1.38541 0.92553 0.92606 0.88717 0.92484 0.92227 0.91763 0.90012 0.94500 0.90140 0.98903 0.89312 0.93411 0.91247 0.90860 0.90139 0.90452 0.89439 0.95583 0.86521 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.05 0.96 6.66 71.98 0.48 1.44 16 3 O -0.41 -11.80 10.31 -144.68 -1.49 -13.30 16 4 C 0.08 2.18 5.60 71.98 0.40 2.59 16 5 C 0.10 3.43 3.09 30.63 0.09 3.53 16 6 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 7 C 0.04 1.27 4.95 86.31 0.43 1.70 16 8 N -0.52 -22.04 4.52 -895.19 -4.04 -26.09 16 9 C 0.12 5.29 4.33 86.30 0.37 5.67 16 10 C 0.04 1.81 1.01 -52.93 -0.05 1.76 16 11 C -0.49 -26.10 8.19 25.60 0.21 -25.89 16 12 H 0.04 2.32 7.83 -2.91 -0.02 2.30 16 13 C 0.05 2.89 5.27 84.65 0.45 3.34 16 14 N -0.89 -48.62 10.89 21.45 0.23 -48.38 16 15 Si 0.94 43.54 29.55 68.60 2.03 45.56 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 C -0.20 -9.06 9.96 30.59 0.30 -8.75 16 20 C -0.19 -7.96 8.21 30.59 0.25 -7.71 16 21 C 0.03 1.12 4.84 86.31 0.42 1.54 16 22 C 0.07 2.35 7.01 72.01 0.50 2.86 16 23 O -0.39 -13.95 10.44 -144.68 -1.51 -15.46 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 33 H -0.01 -0.30 8.08 -2.39 -0.02 -0.32 16 34 H 0.09 4.56 6.06 -2.39 -0.01 4.55 16 35 H 0.26 13.59 8.32 -92.72 -0.77 12.81 16 36 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.09 3.64 5.55 -2.39 -0.01 3.63 16 41 H 0.03 0.96 8.14 -2.38 -0.02 0.95 16 42 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -59.37 340.68 0.76 -58.61 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.95 Total: 18.81 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.60 Total: -19.75 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -3.81 Total: -74.47 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -3.00 Total: -28.76 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -59.37 0.76 -58.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602914275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.470 kcal (2) G-P(sol) polarization free energy of solvation -59.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds