Wall clock time and date at job start Mon Mar 30 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46656 * 2 1 4 4 N 1.46504 * 109.46990 * 119.99483 * 2 1 3 5 5 C 1.46493 * 120.00356 * 295.03986 * 4 2 1 6 6 C 1.50699 * 109.47196 * 270.00044 * 5 4 2 7 7 H 1.07993 * 120.00002 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99904 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00037 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99823 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47083 * 90.00149 * 10 8 6 12 12 H 1.48504 * 109.46899 * 209.99704 * 10 8 6 13 13 H 1.48501 * 109.47557 * 329.99861 * 10 8 6 14 14 C 1.34776 * 119.99317 * 115.04121 * 4 2 1 15 15 O 1.21283 * 119.99538 * 185.32829 * 14 4 2 16 16 C 1.50695 * 120.00609 * 5.33417 * 14 4 2 17 17 H 1.09009 * 109.47108 * 310.06278 * 16 14 4 18 18 C 1.53004 * 109.47314 * 70.06064 * 16 14 4 19 19 O 1.42898 * 109.47346 * 190.06402 * 16 14 4 20 20 C 1.42908 * 113.99883 * 150.00055 * 19 16 14 21 21 C 1.52996 * 109.46714 * 180.02562 * 20 19 16 22 22 C 1.53008 * 117.49406 * 243.62032 * 21 20 19 23 23 C 1.53001 * 59.99932 * 252.50817 * 22 21 20 24 24 H 1.08994 * 109.47658 * 300.00169 * 1 2 3 25 25 H 1.09000 * 109.47156 * 60.00607 * 1 2 3 26 26 H 1.09002 * 109.46687 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47273 * 240.00209 * 2 1 3 28 28 H 1.09003 * 109.46834 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47219 * 299.99934 * 3 2 1 30 30 H 1.09002 * 109.47252 * 60.00188 * 3 2 1 31 31 H 1.09007 * 109.47040 * 29.99885 * 5 4 2 32 32 H 1.08997 * 109.46888 * 149.99606 * 5 4 2 33 33 H 0.97004 * 119.99620 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.47154 * 175.00845 * 18 16 14 35 35 H 1.09001 * 109.47230 * 295.00998 * 18 16 14 36 36 H 1.09003 * 109.46729 * 55.00466 * 18 16 14 37 37 H 1.08994 * 109.46783 * 299.99709 * 20 19 16 38 38 H 1.08995 * 109.47219 * 59.99666 * 20 19 16 39 39 H 1.08998 * 115.55801 * 29.32512 * 21 20 19 40 40 H 1.09000 * 117.50273 * 359.97438 * 22 21 20 41 41 H 1.08997 * 117.49674 * 145.02408 * 22 21 20 42 42 H 1.09003 * 117.50561 * 252.50876 * 23 22 21 43 43 H 1.09000 * 117.49681 * 107.48768 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7562 -0.1298 2.5240 6 6 2.8800 0.7978 2.9084 7 1 3.7065 0.9543 2.2311 8 6 2.8524 1.4474 4.1242 9 7 3.8328 2.2573 4.4594 10 14 1.4216 1.1782 5.2947 11 1 1.7252 0.0353 6.1930 12 1 1.2094 2.4033 6.1069 13 1 0.1930 0.8822 4.5149 14 6 2.7087 -1.8417 1.0751 15 8 3.0292 -2.4636 2.0658 16 6 3.0825 -2.3560 -0.2912 17 1 2.2005 -2.3596 -0.9319 18 6 4.1530 -1.4495 -0.9021 19 8 3.5931 -3.6857 -0.1763 20 6 3.3523 -4.5019 -1.3244 21 6 3.9383 -5.8958 -1.0909 22 6 5.0757 -6.3468 -2.0096 23 6 3.6815 -6.9585 -2.1614 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 0.8178 0.4245 2.5056 32 1 1.6867 -0.9378 3.2523 33 1 3.8135 2.7140 5.3150 34 1 4.4871 -1.8701 -1.8505 35 1 3.7352 -0.4572 -1.0718 36 1 4.9993 -1.3755 -0.2191 37 1 2.2786 -4.5832 -1.4936 38 1 3.8244 -4.0503 -2.1968 39 1 3.9693 -6.2250 -0.0523 40 1 5.4062 -5.6507 -2.7805 41 1 5.8552 -6.9728 -1.5754 42 1 3.5438 -7.9868 -1.8270 43 1 3.0950 -6.6645 -3.0318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:50 Heat of formation + Delta-G solvation = -78.229221 kcal Electronic energy + Delta-G solvation = -21658.516642 eV Core-core repulsion = 18511.109210 eV Total energy + Delta-G solvation = -3147.407432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.25648 -39.27796 -37.74478 -37.33768 -34.91101 -32.72151 -32.60623 -29.81575 -28.09738 -27.88162 -25.59629 -23.86181 -23.22671 -22.57419 -21.68998 -19.80959 -19.07356 -18.57175 -17.77874 -17.03728 -16.44717 -16.41981 -15.97826 -15.77977 -15.18446 -14.97401 -14.76587 -14.50418 -14.12798 -13.88139 -13.65035 -13.49282 -13.36247 -13.18611 -12.83990 -12.71594 -12.58445 -12.38032 -12.36429 -12.28890 -11.97258 -11.92105 -11.72870 -11.55978 -11.37928 -11.27806 -10.80226 -10.64572 -10.31737 -9.43620 -8.30935 -6.33233 1.30521 1.35320 1.42443 1.69022 1.93977 2.31403 2.71925 3.00105 3.03496 3.52109 3.76596 3.91061 3.95902 4.00281 4.01741 4.15961 4.26959 4.33471 4.36940 4.48574 4.63525 4.69543 4.71256 4.77847 4.79049 4.88148 4.91028 4.92752 5.02047 5.03687 5.09294 5.16472 5.24031 5.26403 5.40277 5.47951 5.61647 5.67438 6.16135 6.29972 6.67197 6.70077 7.24079 7.39765 8.85538 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.004715 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.550681 B = 5937.535354 C = 6330.143195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 C -0.150 4.150 4 N -0.588 5.588 5 C 0.226 3.774 6 C -0.519 4.519 7 H 0.036 0.964 8 C 0.012 3.988 9 N -0.944 5.944 10 Si 0.938 3.062 11 H -0.281 1.281 12 H -0.275 1.275 13 H -0.239 1.239 14 C 0.496 3.504 15 O -0.587 6.587 16 C 0.082 3.918 17 H 0.119 0.881 18 C -0.166 4.166 19 O -0.390 6.390 20 C 0.086 3.914 21 C -0.181 4.181 22 C -0.176 4.176 23 C -0.153 4.153 24 H 0.045 0.955 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 -10.727 -19.750 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 C -0.208 4.208 4 N -0.320 5.320 5 C 0.104 3.896 6 C -0.558 4.558 7 H 0.055 0.945 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.761 3.239 11 H -0.207 1.207 12 H -0.200 1.200 13 H -0.163 1.163 14 C 0.284 3.716 15 O -0.467 6.467 16 C 0.022 3.978 17 H 0.137 0.863 18 C -0.223 4.223 19 O -0.309 6.309 20 C 0.010 3.990 21 C -0.199 4.199 22 C -0.213 4.213 23 C -0.190 4.190 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.352 -10.988 -18.951 22.808 hybrid contribution 0.052 0.318 1.366 1.404 sum -6.300 -10.670 -17.585 21.512 Atomic orbital electron populations 1.22176 0.93372 1.02663 1.03459 1.21609 0.95783 0.94033 0.86888 1.22071 1.00456 0.95646 1.02657 1.48072 1.53388 1.22221 1.08368 1.19251 0.96197 0.92704 0.81469 1.21501 1.06618 1.24903 1.02786 0.94519 1.25738 0.98822 0.94565 0.99408 1.70038 1.34241 1.30876 1.23353 0.85865 0.80806 0.77768 0.79446 1.20733 1.19988 1.16257 1.21199 0.77625 0.81003 0.91781 1.90631 1.55282 1.59026 1.41792 1.21924 0.98981 0.84296 0.92640 0.86328 1.22281 0.98173 1.00125 1.01725 1.88049 1.79443 1.22070 1.41325 1.22341 0.99943 0.89016 0.87689 1.22111 1.05760 0.94771 0.97302 1.23165 0.92182 1.03930 1.02004 1.23075 0.98869 0.97528 0.99542 0.93548 0.88069 0.92063 0.86725 0.94496 0.88769 0.93615 0.93144 0.97188 0.92462 0.88048 0.89351 0.94429 0.91571 0.90814 0.89352 0.87556 0.88601 0.87702 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.25 71.98 0.67 -3.01 16 2 C 0.12 3.41 2.39 44.99 0.11 3.52 16 3 C -0.15 -4.67 8.14 71.98 0.59 -4.08 16 4 N -0.59 -24.13 2.38 -802.16 -1.91 -26.04 16 5 C 0.23 11.20 3.57 85.63 0.31 11.50 16 6 C -0.52 -30.42 8.40 25.60 0.21 -30.20 16 7 H 0.04 2.38 7.78 -2.91 -0.02 2.36 16 8 C 0.01 0.74 5.47 84.66 0.46 1.20 16 9 N -0.94 -60.06 13.96 21.45 0.30 -59.76 16 10 Si 0.94 45.33 27.47 68.60 1.88 47.22 16 11 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 14 C 0.50 21.55 7.01 87.66 0.61 22.17 16 15 O -0.59 -32.54 16.08 15.80 0.25 -32.28 16 16 C 0.08 2.53 2.27 29.85 0.07 2.60 16 17 H 0.12 2.58 6.72 -2.38 -0.02 2.56 16 18 C -0.17 -4.44 9.18 71.98 0.66 -3.78 16 19 O -0.39 -13.02 9.54 -130.14 -1.24 -14.27 16 20 C 0.09 1.89 6.03 71.98 0.43 2.33 16 21 C -0.18 -3.89 6.06 -10.79 -0.07 -3.96 16 22 C -0.18 -2.92 10.18 30.60 0.31 -2.60 16 23 C -0.15 -2.20 10.25 30.60 0.31 -1.88 16 24 H 0.05 1.26 6.86 -2.39 -0.02 1.24 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.12 2.46 4.47 -2.39 -0.01 2.45 16 28 H 0.04 1.30 7.57 -2.39 -0.02 1.28 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.73 6.95 -2.39 -0.02 1.72 16 31 H 0.05 2.31 5.75 -2.38 -0.01 2.29 16 32 H 0.01 0.55 6.78 -2.39 -0.02 0.53 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.10 1.93 7.78 -2.39 -0.02 1.91 16 35 H 0.09 2.15 5.58 -2.39 -0.01 2.13 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 38 H 0.07 1.24 7.52 -2.39 -0.02 1.22 16 39 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.11 1.50 8.03 -2.39 -0.02 1.49 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -81.17 341.72 4.88 -76.28 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.92 Total: 15.05 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 4.68 Total: -6.20 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.61 Total: -85.80 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -0.99 Total: -46.55 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.22 kcal Total: -81.17 4.88 -76.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.944 kcal (2) G-P(sol) polarization free energy of solvation -81.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds