Wall clock time and date at job start Mon Mar 30 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47390 * 2 1 4 4 C 1.46491 * 120.00729 * 91.45626 * 3 2 1 5 5 C 1.50698 * 109.47125 * 84.61667 * 4 3 2 6 6 H 1.07995 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99935 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00022 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00039 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47103 * 90.00256 * 9 7 5 11 11 H 1.48508 * 109.46984 * 210.00090 * 9 7 5 12 12 H 1.48496 * 109.47196 * 330.00048 * 9 7 5 13 13 C 1.34781 * 119.99651 * 271.18146 * 3 2 1 14 14 O 1.21287 * 120.00061 * 4.42979 * 13 3 2 15 15 C 1.50699 * 120.00065 * 184.42610 * 13 3 2 16 16 C 1.53008 * 109.47039 * 282.71854 * 15 13 3 17 17 C 1.53000 * 109.47319 * 300.00172 * 16 15 13 18 18 C 1.53004 * 109.46769 * 299.99953 * 17 16 15 19 19 O 1.42897 * 109.46859 * 179.97438 * 18 17 16 20 20 C 1.42905 * 114.00165 * 90.00162 * 19 18 17 21 21 C 1.53000 * 109.47328 * 60.00140 * 18 17 16 22 22 C 1.52998 * 109.47018 * 162.72234 * 15 13 3 23 23 H 1.08994 * 109.47426 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47203 * 300.00751 * 1 2 3 25 25 H 1.09004 * 109.47070 * 60.00674 * 1 2 3 26 26 H 1.08996 * 109.47203 * 239.99249 * 2 1 3 27 27 H 1.09004 * 109.47070 * 119.99326 * 2 1 3 28 28 H 1.09003 * 109.47569 * 204.62091 * 4 3 2 29 29 H 1.09006 * 109.46896 * 324.62304 * 4 3 2 30 30 H 0.97001 * 120.00254 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47031 * 42.72163 * 15 13 3 32 32 H 1.08997 * 109.47005 * 60.00238 * 16 15 13 33 33 H 1.08995 * 109.46621 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47086 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47196 * 59.99631 * 17 16 15 36 36 H 1.08996 * 109.47434 * 299.99848 * 18 17 16 37 37 H 1.09003 * 109.47201 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.46631 * 299.99749 * 20 19 18 39 39 H 1.09000 * 109.46828 * 59.99778 * 20 19 18 40 40 H 1.08997 * 109.47172 * 179.97438 * 21 18 17 41 41 H 1.09010 * 109.47153 * 59.99660 * 21 18 17 42 42 H 1.09004 * 109.47497 * 179.97438 * 22 15 13 43 43 H 1.08999 * 109.46922 * 299.99978 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2930 2.0611 1.2681 5 6 3.6835 1.7135 1.7337 6 1 4.3010 1.0525 1.1437 7 6 4.1673 2.2393 2.9129 8 7 5.3806 1.9355 3.3195 9 14 3.0994 3.3832 3.9331 10 1 2.3066 2.5861 4.9032 11 1 3.9630 4.3417 4.6686 12 1 2.1800 4.1311 3.0384 13 6 2.2203 2.0245 -1.1670 14 8 1.9222 1.4895 -2.2139 15 6 2.8165 3.4085 -1.1712 16 6 1.7458 4.4262 -0.7723 17 6 0.5882 4.3665 -1.7709 18 6 1.1065 4.6944 -3.1726 19 8 0.0255 4.6381 -4.1054 20 6 -0.6579 5.8811 -4.2789 21 6 2.1771 3.6768 -3.5715 22 6 3.3347 3.7364 -2.5729 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.2161 3.1392 1.1266 29 1 1.5685 1.7404 2.0167 30 1 5.7211 2.3057 4.1489 31 1 3.6412 3.4510 -0.4598 32 1 1.3766 4.1926 0.2263 33 1 2.1772 5.4272 -0.7749 34 1 -0.1743 5.0919 -1.4870 35 1 0.1570 3.3654 -1.7680 36 1 1.5377 5.6955 -3.1757 37 1 -1.4637 5.7549 -5.0022 38 1 -1.0734 6.2035 -3.3242 39 1 0.0423 6.6330 -4.6430 40 1 2.5460 3.9101 -4.5703 41 1 1.7459 2.6756 -3.5685 42 1 3.7655 4.7377 -2.5761 43 1 4.0974 3.0114 -2.8570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614815061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:52 Heat of formation + Delta-G solvation = -92.850209 kcal Electronic energy + Delta-G solvation = -22459.895116 eV Core-core repulsion = 19311.853670 eV Total energy + Delta-G solvation = -3148.041445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23650 -38.17452 -35.94511 -35.14412 -32.69914 -31.19414 -30.40745 -29.47726 -27.62216 -26.44044 -23.60672 -22.90077 -22.23093 -21.61094 -20.17399 -17.92193 -17.05485 -16.63433 -16.08339 -15.85289 -15.01982 -14.97328 -14.74509 -14.29846 -13.82048 -13.53256 -13.23716 -13.04412 -12.86883 -12.47882 -12.22734 -12.11475 -12.03464 -11.67843 -11.65127 -11.55226 -11.39615 -10.99242 -10.83677 -10.73657 -10.48979 -10.41564 -10.22395 -10.17092 -10.07353 -9.63133 -9.25371 -8.76565 -8.55838 -7.71906 -6.23749 -4.25019 3.14918 3.21963 3.24259 3.37005 3.80561 3.94281 4.23952 4.91009 4.95367 5.06850 5.18198 5.22037 5.27440 5.36652 5.46883 5.52281 5.58192 5.64801 5.73348 5.76076 5.77561 5.80274 5.86493 5.98847 6.09587 6.21749 6.24746 6.37557 6.38190 6.46519 6.47781 6.52534 6.55161 6.62822 6.75793 6.93534 7.35029 7.40787 7.47572 8.15945 8.43226 8.81646 9.00088 9.35968 10.88968 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.006255 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.570208 B = 4475.426154 C = 4914.430435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.200 3.800 5 C -0.540 4.540 6 H 0.078 0.922 7 C 0.076 3.924 8 N -0.891 5.891 9 Si 0.870 3.130 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.527 3.473 14 O -0.560 6.560 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.140 4.140 18 C 0.096 3.904 19 O -0.385 6.385 20 C 0.031 3.969 21 C -0.140 4.140 22 C -0.091 4.091 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.266 0.734 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 6.522 -8.624 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.319 5.319 4 C 0.079 3.921 5 C -0.579 4.579 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.528 5.528 9 Si 0.697 3.303 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.316 3.684 14 O -0.442 6.442 15 C -0.134 4.134 16 C -0.148 4.148 17 C -0.178 4.178 18 C 0.038 3.962 19 O -0.304 6.304 20 C -0.065 4.065 21 C -0.177 4.177 22 C -0.129 4.129 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.080 0.920 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.236 6.097 -9.073 14.311 hybrid contribution -0.317 0.954 1.112 1.499 sum -9.553 7.050 -7.961 14.295 Atomic orbital electron populations 1.22109 0.96988 1.01270 1.01788 1.21244 0.93231 0.83635 1.02687 1.47956 1.63401 1.13458 1.07086 1.19982 0.97216 0.93579 0.81320 1.21398 0.98154 1.30779 1.07546 0.90386 1.24882 0.94842 0.95955 0.97051 1.69894 1.16137 1.44121 1.22695 0.86944 0.80852 0.81424 0.81113 1.19944 1.20861 1.18829 1.20371 0.77380 0.87612 0.83068 1.90430 1.53761 1.68815 1.31156 1.21349 0.99914 0.92591 0.99520 1.21577 0.95133 0.98752 0.99323 1.22045 0.98049 1.02813 0.94916 1.22167 0.87192 0.98684 0.88139 1.87940 1.47442 1.31823 1.63179 1.22728 0.96620 0.86756 1.00445 1.22081 0.94677 1.03232 0.97677 1.21262 0.97506 1.01119 0.92987 0.92407 0.92939 0.92640 0.91067 0.90297 0.93833 0.95618 0.92367 0.87015 0.90396 0.91177 0.92396 0.90817 0.93038 0.90107 0.94385 0.94429 0.92681 0.86193 0.92027 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.23 37.16 0.38 -2.17 16 2 C 0.12 2.11 6.10 -4.04 -0.02 2.08 16 3 N -0.59 -11.94 2.46 -175.06 -0.43 -12.37 16 4 C 0.20 4.35 3.79 -5.20 -0.02 4.33 16 5 C -0.54 -14.01 9.65 -34.44 -0.33 -14.34 16 6 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 7 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 9 Si 0.87 19.49 27.47 -169.99 -4.67 14.82 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 13 C 0.53 10.45 5.60 -10.98 -0.06 10.39 16 14 O -0.56 -11.82 12.70 5.55 0.07 -11.75 16 15 C -0.11 -1.97 2.17 -91.77 -0.20 -2.17 16 16 C -0.11 -1.70 5.14 -26.73 -0.14 -1.84 16 17 C -0.14 -2.10 5.32 -26.73 -0.14 -2.25 16 18 C 0.10 1.39 2.61 -26.73 -0.07 1.32 16 19 O -0.38 -5.75 10.35 -35.23 -0.36 -6.11 16 20 C 0.03 0.34 10.82 101.05 1.09 1.43 16 21 C -0.14 -2.20 5.28 -26.73 -0.14 -2.35 16 22 C -0.09 -1.41 5.25 -26.73 -0.14 -1.56 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 27 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 28 H 0.04 0.91 3.34 -51.93 -0.17 0.74 16 29 H 0.03 0.55 7.54 -51.93 -0.39 0.16 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.11 2.14 7.22 -51.93 -0.37 1.77 16 32 H 0.08 1.27 5.84 -51.93 -0.30 0.97 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 35 H 0.07 1.28 7.10 -51.93 -0.37 0.91 16 36 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.38 7.87 -51.93 -0.41 -0.03 16 39 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.12 2.26 4.98 -51.93 -0.26 2.00 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -29.16 329.81 -6.83 -35.99 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.29 Total: 4.46 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.34 Total: -37.19 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.29 Total: -17.86 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.67 Total: 14.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.16 -6.83 -35.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614815061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.860 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds