Wall clock time and date at job start Mon Mar 30 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47390 * 2 1 4 4 C 1.46491 * 120.00729 * 91.45626 * 3 2 1 5 5 C 1.50698 * 109.47125 * 84.61667 * 4 3 2 6 6 H 1.07995 * 120.00245 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99935 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00022 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00039 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47103 * 90.00256 * 9 7 5 11 11 H 1.48508 * 109.46984 * 210.00090 * 9 7 5 12 12 H 1.48496 * 109.47196 * 330.00048 * 9 7 5 13 13 C 1.34781 * 119.99651 * 271.18146 * 3 2 1 14 14 O 1.21287 * 120.00061 * 4.42979 * 13 3 2 15 15 C 1.50699 * 120.00065 * 184.42610 * 13 3 2 16 16 C 1.53008 * 109.47039 * 282.71854 * 15 13 3 17 17 C 1.53000 * 109.47319 * 300.00172 * 16 15 13 18 18 C 1.53004 * 109.46769 * 299.99953 * 17 16 15 19 19 O 1.42897 * 109.46859 * 179.97438 * 18 17 16 20 20 C 1.42905 * 114.00165 * 90.00162 * 19 18 17 21 21 C 1.53000 * 109.47328 * 60.00140 * 18 17 16 22 22 C 1.52998 * 109.47018 * 162.72234 * 15 13 3 23 23 H 1.08994 * 109.47426 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47203 * 300.00751 * 1 2 3 25 25 H 1.09004 * 109.47070 * 60.00674 * 1 2 3 26 26 H 1.08996 * 109.47203 * 239.99249 * 2 1 3 27 27 H 1.09004 * 109.47070 * 119.99326 * 2 1 3 28 28 H 1.09003 * 109.47569 * 204.62091 * 4 3 2 29 29 H 1.09006 * 109.46896 * 324.62304 * 4 3 2 30 30 H 0.97001 * 120.00254 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47031 * 42.72163 * 15 13 3 32 32 H 1.08997 * 109.47005 * 60.00238 * 16 15 13 33 33 H 1.08995 * 109.46621 * 179.97438 * 16 15 13 34 34 H 1.08999 * 109.47086 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47196 * 59.99631 * 17 16 15 36 36 H 1.08996 * 109.47434 * 299.99848 * 18 17 16 37 37 H 1.09003 * 109.47201 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.46631 * 299.99749 * 20 19 18 39 39 H 1.09000 * 109.46828 * 59.99778 * 20 19 18 40 40 H 1.08997 * 109.47172 * 179.97438 * 21 18 17 41 41 H 1.09010 * 109.47153 * 59.99660 * 21 18 17 42 42 H 1.09004 * 109.47497 * 179.97438 * 22 15 13 43 43 H 1.08999 * 109.46922 * 299.99978 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2930 2.0611 1.2681 5 6 3.6835 1.7135 1.7337 6 1 4.3010 1.0525 1.1437 7 6 4.1673 2.2393 2.9129 8 7 5.3806 1.9355 3.3195 9 14 3.0994 3.3832 3.9331 10 1 2.3066 2.5861 4.9032 11 1 3.9630 4.3417 4.6686 12 1 2.1800 4.1311 3.0384 13 6 2.2203 2.0245 -1.1670 14 8 1.9222 1.4895 -2.2139 15 6 2.8165 3.4085 -1.1712 16 6 1.7458 4.4262 -0.7723 17 6 0.5882 4.3665 -1.7709 18 6 1.1065 4.6944 -3.1726 19 8 0.0255 4.6381 -4.1054 20 6 -0.6579 5.8811 -4.2789 21 6 2.1771 3.6768 -3.5715 22 6 3.3347 3.7364 -2.5729 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.2161 3.1392 1.1266 29 1 1.5685 1.7404 2.0167 30 1 5.7211 2.3057 4.1489 31 1 3.6412 3.4510 -0.4598 32 1 1.3766 4.1926 0.2263 33 1 2.1772 5.4272 -0.7749 34 1 -0.1743 5.0919 -1.4870 35 1 0.1570 3.3654 -1.7680 36 1 1.5377 5.6955 -3.1757 37 1 -1.4637 5.7549 -5.0022 38 1 -1.0734 6.2035 -3.3242 39 1 0.0423 6.6330 -4.6430 40 1 2.5460 3.9101 -4.5703 41 1 1.7459 2.6756 -3.5685 42 1 3.7655 4.7377 -2.5761 43 1 4.0974 3.0114 -2.8570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614815061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:52 Heat of formation + Delta-G solvation = -110.518911 kcal Electronic energy + Delta-G solvation = -22460.661288 eV Core-core repulsion = 19311.853670 eV Total energy + Delta-G solvation = -3148.807618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66500 -39.39446 -37.28370 -36.68680 -34.65341 -32.62416 -31.65638 -30.80741 -29.40244 -27.35131 -24.97647 -24.63656 -23.54320 -22.93229 -21.47985 -19.48640 -19.04979 -17.91878 -17.42487 -17.21414 -16.50545 -16.14251 -15.99333 -15.91814 -15.20109 -14.81524 -14.70939 -14.49846 -14.29186 -14.03445 -13.64295 -13.36767 -13.33024 -13.13600 -13.03598 -12.88205 -12.60539 -12.49701 -12.45387 -12.08818 -11.94153 -11.77940 -11.68752 -11.61578 -11.38747 -11.32884 -10.78349 -10.34272 -10.07265 -9.38013 -8.28825 -6.36107 1.41382 1.41738 1.51890 1.81229 2.33983 2.35766 2.88400 3.05252 3.62967 3.75732 3.85292 4.11746 4.16425 4.21014 4.31242 4.39061 4.45940 4.51881 4.53292 4.55974 4.59008 4.61539 4.67193 4.79137 4.81252 4.86341 4.91597 4.97712 5.03413 5.08982 5.10154 5.23349 5.25839 5.30199 5.34575 5.48954 5.62055 5.81791 6.21133 6.39385 6.66602 6.74333 7.26955 7.44643 8.87637 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.006255 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.570208 B = 4475.426154 C = 4914.430435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.109 3.891 3 N -0.598 5.598 4 C 0.210 3.790 5 C -0.541 4.541 6 H 0.027 0.973 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.939 3.061 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.231 1.231 13 C 0.519 3.481 14 O -0.577 6.577 15 C -0.113 4.113 16 C -0.106 4.106 17 C -0.134 4.134 18 C 0.099 3.901 19 O -0.412 6.412 20 C 0.024 3.976 21 C -0.137 4.137 22 C -0.088 4.088 23 H 0.083 0.917 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.264 9.115 -8.515 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 N -0.328 5.328 4 C 0.088 3.912 5 C -0.579 4.579 6 H 0.045 0.955 7 C -0.179 4.179 8 N -0.583 5.583 9 Si 0.761 3.239 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.154 1.154 13 C 0.309 3.691 14 O -0.459 6.459 15 C -0.134 4.134 16 C -0.144 4.144 17 C -0.172 4.172 18 C 0.041 3.959 19 O -0.331 6.331 20 C -0.072 4.072 21 C -0.174 4.174 22 C -0.125 4.125 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.353 8.681 -8.994 16.886 hybrid contribution 0.392 0.041 0.974 1.050 sum -10.962 8.721 -8.021 16.142 Atomic orbital electron populations 1.21986 0.94412 1.02913 1.01461 1.21362 0.95327 0.82843 1.01873 1.48070 1.63730 1.14125 1.06891 1.19823 0.94650 0.94644 0.82053 1.21529 0.99660 1.29627 1.07093 0.95459 1.25799 0.96083 0.97743 0.98324 1.70061 1.18587 1.46102 1.23564 0.85846 0.79283 0.79223 0.79557 1.19248 1.20952 1.15401 1.20905 0.76963 0.88590 0.82603 1.90445 1.54373 1.69515 1.31560 1.21391 0.99902 0.91859 1.00279 1.21588 0.94567 0.99320 0.98894 1.21977 0.98227 1.01705 0.95286 1.22108 0.86892 0.99198 0.87679 1.87909 1.47762 1.34261 1.63197 1.22966 0.97134 0.85606 1.01519 1.21957 0.95147 1.02008 0.98290 1.21264 0.97194 1.02327 0.91757 0.89830 0.92264 0.93759 0.92130 0.90877 0.92078 0.94451 0.92289 0.89001 0.91066 0.88212 0.90177 0.93847 0.90479 0.88812 0.93396 0.92890 0.91695 0.89595 0.88997 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 10.23 71.98 0.74 -3.78 16 2 C 0.11 4.04 6.10 86.38 0.53 4.57 16 3 N -0.60 -24.48 2.46 -826.17 -2.03 -26.51 16 4 C 0.21 8.97 3.79 85.63 0.32 9.30 16 5 C -0.54 -28.67 9.65 25.60 0.25 -28.42 16 6 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 7 C 0.02 1.03 5.47 84.65 0.46 1.50 16 8 N -0.94 -55.66 13.96 21.45 0.30 -55.36 16 9 Si 0.94 39.02 27.47 68.60 1.88 40.91 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 13 C 0.52 20.88 5.60 87.66 0.49 21.37 16 14 O -0.58 -25.03 12.70 -3.05 -0.04 -25.07 16 15 C -0.11 -3.88 2.17 -11.54 -0.03 -3.90 16 16 C -0.11 -2.98 5.14 30.60 0.16 -2.82 16 17 C -0.13 -3.69 5.32 30.60 0.16 -3.52 16 18 C 0.10 2.61 2.61 30.60 0.08 2.69 16 19 O -0.41 -11.40 10.35 -148.98 -1.54 -12.94 16 20 C 0.02 0.44 10.82 113.37 1.23 1.66 16 21 C -0.14 -4.18 5.28 30.59 0.16 -4.01 16 22 C -0.09 -2.64 5.25 30.59 0.16 -2.48 16 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 2.34 7.52 -2.39 -0.02 2.32 16 27 H 0.07 2.75 8.06 -2.39 -0.02 2.73 16 28 H 0.06 2.43 3.34 -2.39 -0.01 2.42 16 29 H 0.04 1.53 7.54 -2.38 -0.02 1.51 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.09 3.52 7.22 -2.39 -0.02 3.50 16 32 H 0.07 2.10 5.84 -2.39 -0.01 2.08 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 1.84 7.87 -2.39 -0.02 1.82 16 35 H 0.04 1.46 7.10 -2.39 -0.02 1.44 16 36 H 0.08 1.66 7.79 -2.39 -0.02 1.64 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 0.78 7.87 -2.39 -0.02 0.76 16 39 H 0.05 0.81 8.09 -2.39 -0.02 0.79 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.09 3.27 4.98 -2.54 -0.01 3.26 16 42 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -65.53 329.81 4.20 -61.32 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.92 Total: 25.51 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 4.71 Total: -7.87 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.73 Total: -81.87 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.58 Total: -38.01 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.88 Total: 40.91 kcal Total: -65.53 4.20 -61.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614815061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.194 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds