Wall clock time and date at job start Mon Mar 30 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46724 * 2 1 4 4 C 1.42904 * 113.99604 * 180.02562 * 3 2 1 5 5 H 1.09006 * 115.55165 * 4.32254 * 4 3 2 6 6 C 1.53073 * 117.53281 * 218.61183 * 4 3 2 7 7 C 1.52992 * 59.98251 * 252.52912 * 6 4 3 8 8 H 1.09003 * 117.49546 * 252.49677 * 7 6 4 9 9 C 1.50699 * 117.50434 * 107.50313 * 7 6 4 10 10 O 1.21285 * 119.99398 * 291.25473 * 9 7 6 11 11 N 1.34771 * 120.00631 * 111.24826 * 9 7 6 12 12 C 1.46493 * 120.00456 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.47128 * 269.99867 * 12 11 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72498 * 13 12 11 16 16 N 1.31514 * 120.00481 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99745 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00365 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00213 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00116 * 17 15 13 21 21 C 1.46507 * 119.99478 * 0.02562 * 11 9 7 22 22 C 1.53002 * 109.47219 * 269.99855 * 21 11 9 23 23 C 1.52998 * 109.47107 * 175.00183 * 22 21 11 24 24 C 1.53005 * 109.47196 * 295.00296 * 22 21 11 25 25 H 1.09005 * 109.46969 * 60.00295 * 1 2 3 26 26 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47256 * 300.00646 * 1 2 3 28 28 H 1.08989 * 109.47254 * 239.99623 * 2 1 3 29 29 H 1.08998 * 109.46749 * 119.99358 * 2 1 3 30 30 H 1.09003 * 117.49596 * 145.04103 * 6 4 3 31 31 H 1.09004 * 117.51278 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47786 * 150.00139 * 12 11 9 33 33 H 1.08998 * 109.47558 * 30.00002 * 12 11 9 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 35 35 H 1.08993 * 109.47381 * 30.00157 * 21 11 9 36 36 H 1.09002 * 109.46817 * 150.00395 * 21 11 9 37 37 H 1.09003 * 109.46896 * 55.00023 * 22 21 11 38 38 H 1.09003 * 109.47373 * 60.00132 * 23 22 21 39 39 H 1.08995 * 109.47127 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47099 * 300.00206 * 23 22 21 41 41 H 1.08995 * 109.47196 * 180.02562 * 24 22 21 42 42 H 1.08995 * 109.46997 * 300.00054 * 24 22 21 43 43 H 1.09000 * 109.46631 * 59.99865 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5197 -0.0751 6 6 4.0528 2.5732 0.8464 7 6 4.0420 2.6876 -0.6792 8 1 4.9900 2.5546 -1.2006 9 6 3.0957 3.6854 -1.2957 10 8 1.8986 3.4980 -1.2433 11 7 3.5796 4.7858 -1.9050 12 6 2.6596 5.7560 -2.5037 13 6 2.4004 5.3821 -3.9404 14 1 2.8741 4.5093 -4.3651 15 6 1.5547 6.1512 -4.7112 16 7 1.3282 5.8247 -5.9649 17 14 0.7296 7.6564 -3.9744 18 1 1.5948 8.8457 -4.1799 19 1 -0.5807 7.8771 -4.6376 20 1 0.5185 7.4431 -2.5200 21 6 5.0257 5.0117 -1.9685 22 6 5.4720 5.8078 -0.7405 23 6 6.9966 5.9365 -0.7426 24 6 4.8424 7.2017 -0.7798 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.0078 2.3646 1.3287 31 1 3.3754 3.2195 1.4046 32 1 3.1027 6.7510 -2.4615 33 1 1.7194 5.7534 -1.9523 34 1 0.7329 6.3656 -6.5070 35 1 5.5429 4.0525 -1.9873 36 1 5.2665 5.5722 -2.8719 37 1 5.1523 5.2901 0.1639 38 1 7.3162 6.4542 -1.6470 39 1 7.3145 6.5040 0.1320 40 1 7.4451 4.9435 -0.7146 41 1 5.1607 7.7689 0.0948 42 1 5.1620 7.7194 -1.6841 43 1 3.7562 7.1099 -0.7782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690006305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:08 Heat of formation + Delta-G solvation = -56.587397 kcal Electronic energy + Delta-G solvation = -21804.193178 eV Core-core repulsion = 18657.724207 eV Total energy + Delta-G solvation = -3146.468972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.61024 -37.83845 -36.24249 -34.86574 -33.43346 -32.18280 -30.58878 -28.55935 -26.90632 -25.51974 -24.11350 -22.71592 -22.05972 -21.31476 -20.19529 -18.23234 -17.16911 -16.84946 -15.96906 -15.43885 -15.33683 -14.72425 -14.51438 -14.35707 -13.68768 -13.46613 -13.20249 -12.70407 -12.54437 -12.45035 -12.23208 -12.13299 -12.08249 -11.90835 -11.69478 -11.44940 -11.10427 -11.00709 -10.91729 -10.81029 -10.65843 -10.50732 -10.24019 -10.14385 -9.98307 -9.44065 -8.96915 -8.67194 -8.52069 -7.52263 -6.02277 -3.99555 3.25408 3.30718 3.39004 3.44337 3.66217 3.91271 4.18292 4.45548 4.82994 4.94186 5.09079 5.11250 5.17768 5.21329 5.23990 5.30563 5.40865 5.45464 5.47246 5.52570 5.72258 5.75786 5.84242 5.86305 5.88918 6.05012 6.06927 6.07906 6.15088 6.21612 6.28299 6.31834 6.53697 6.60475 6.82077 7.08654 7.48077 7.52950 7.70786 8.43032 8.56078 9.01785 9.21964 9.59295 11.11442 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.007275 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.287365 B = 3847.754637 C = 5483.532237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.320 6.320 4 C 0.046 3.954 5 H 0.112 0.888 6 C -0.164 4.164 7 C -0.188 4.188 8 H 0.123 0.877 9 C 0.534 3.466 10 O -0.514 6.514 11 N -0.591 5.591 12 C 0.215 3.785 13 C -0.524 4.524 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.900 5.900 17 Si 0.872 3.128 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.118 3.882 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.533 -6.467 14.056 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.237 6.237 4 C -0.013 4.013 5 H 0.129 0.871 6 C -0.202 4.202 7 C -0.210 4.210 8 H 0.140 0.860 9 C 0.320 3.680 10 O -0.389 6.389 11 N -0.323 5.323 12 C 0.094 3.906 13 C -0.562 4.562 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.539 5.539 17 Si 0.699 3.301 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.006 4.006 22 C -0.133 4.133 23 C -0.200 4.200 24 C -0.207 4.207 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.609 -6.336 13.898 17.533 hybrid contribution -0.117 0.647 0.043 0.659 sum 8.492 -5.688 13.941 17.287 Atomic orbital electron populations 1.21700 0.93734 1.01600 1.03664 1.22499 0.95889 0.84340 0.99321 1.88226 1.17033 1.24907 1.93541 1.22517 0.83592 0.92863 1.02377 0.87072 1.23367 1.02454 1.02675 0.91684 1.22867 1.01442 1.00256 0.96427 0.85971 1.19224 0.88247 0.81517 0.78998 1.90723 1.15447 1.74675 1.58011 1.47809 1.06259 1.22797 1.55413 1.19714 0.89375 0.87222 0.94266 1.21379 1.28059 1.12913 0.93894 0.90875 1.24845 0.95907 0.97610 0.94679 1.69898 1.37313 1.39531 1.07145 0.86905 0.79537 0.83431 0.80268 1.20123 1.21005 1.18808 1.21530 0.81705 0.99506 0.97897 1.21586 0.95156 0.97258 0.99329 1.21768 0.95223 1.01349 1.01699 1.21943 1.01887 0.95840 1.01065 0.91265 0.91538 0.92056 0.93551 0.93950 0.87739 0.87938 0.95226 0.94438 0.92692 0.91525 0.90091 0.91268 0.92539 0.92929 0.92882 0.93514 0.92535 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 37.16 0.38 -1.53 16 2 C 0.06 0.75 6.53 37.16 0.24 0.99 16 3 O -0.32 -5.61 8.48 -57.36 -0.49 -6.10 16 4 C 0.05 0.66 6.41 -26.70 -0.17 0.49 16 5 H 0.11 1.20 7.93 -51.93 -0.41 0.79 16 6 C -0.16 -2.09 10.19 -26.70 -0.27 -2.36 16 7 C -0.19 -2.94 5.28 -91.78 -0.48 -3.43 16 8 H 0.12 1.60 6.44 -51.93 -0.33 1.26 16 9 C 0.53 11.50 7.46 -10.99 -0.08 11.41 16 10 O -0.51 -13.42 14.50 -16.58 -0.24 -13.67 16 11 N -0.59 -12.51 2.28 -175.06 -0.40 -12.91 16 12 C 0.21 5.38 3.30 -5.19 -0.02 5.36 16 13 C -0.52 -15.43 9.94 -34.44 -0.34 -15.77 16 14 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 17 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 21 C 0.12 1.92 4.73 -4.04 -0.02 1.90 16 22 C -0.11 -1.53 3.13 -90.62 -0.28 -1.81 16 23 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 24 C -0.15 -2.19 8.18 37.16 0.30 -1.88 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.58 8.14 -51.94 -0.42 0.16 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.03 0.70 5.42 -51.93 -0.28 0.42 16 33 H 0.04 1.03 6.46 -51.93 -0.34 0.70 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.07 0.93 6.00 -51.93 -0.31 0.62 16 36 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.10 5.89 -51.93 -0.31 0.80 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -35.52 345.94 -7.79 -43.31 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.49 Total: 0.05 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.50 Total: -5.76 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.37 Total: -40.47 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.73 Total: -19.77 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.52 -7.79 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690006305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.273 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds