Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46724 * 2 1 4 4 C 1.42904 * 113.99604 * 180.02562 * 3 2 1 5 5 H 1.09006 * 115.55165 * 4.32254 * 4 3 2 6 6 C 1.53073 * 117.53281 * 218.61183 * 4 3 2 7 7 C 1.52992 * 59.98251 * 252.52912 * 6 4 3 8 8 H 1.09003 * 117.49546 * 252.49677 * 7 6 4 9 9 C 1.50699 * 117.50434 * 107.50313 * 7 6 4 10 10 O 1.21285 * 119.99398 * 291.25473 * 9 7 6 11 11 N 1.34771 * 120.00631 * 111.24826 * 9 7 6 12 12 C 1.46493 * 120.00456 * 180.02562 * 11 9 7 13 13 C 1.50706 * 109.47128 * 269.99867 * 12 11 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72498 * 13 12 11 16 16 N 1.31514 * 120.00481 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99745 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00365 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00213 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00116 * 17 15 13 21 21 C 1.46507 * 119.99478 * 0.02562 * 11 9 7 22 22 C 1.53002 * 109.47219 * 269.99855 * 21 11 9 23 23 C 1.52998 * 109.47107 * 175.00183 * 22 21 11 24 24 C 1.53005 * 109.47196 * 295.00296 * 22 21 11 25 25 H 1.09005 * 109.46969 * 60.00295 * 1 2 3 26 26 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47256 * 300.00646 * 1 2 3 28 28 H 1.08989 * 109.47254 * 239.99623 * 2 1 3 29 29 H 1.08998 * 109.46749 * 119.99358 * 2 1 3 30 30 H 1.09003 * 117.49596 * 145.04103 * 6 4 3 31 31 H 1.09004 * 117.51278 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.47786 * 150.00139 * 12 11 9 33 33 H 1.08998 * 109.47558 * 30.00002 * 12 11 9 34 34 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 35 35 H 1.08993 * 109.47381 * 30.00157 * 21 11 9 36 36 H 1.09002 * 109.46817 * 150.00395 * 21 11 9 37 37 H 1.09003 * 109.46896 * 55.00023 * 22 21 11 38 38 H 1.09003 * 109.47373 * 60.00132 * 23 22 21 39 39 H 1.08995 * 109.47127 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47099 * 300.00206 * 23 22 21 41 41 H 1.08995 * 109.47196 * 180.02562 * 24 22 21 42 42 H 1.08995 * 109.46997 * 300.00054 * 24 22 21 43 43 H 1.09000 * 109.46631 * 59.99865 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9769 0.5197 -0.0751 6 6 4.0528 2.5732 0.8464 7 6 4.0420 2.6876 -0.6792 8 1 4.9900 2.5546 -1.2006 9 6 3.0957 3.6854 -1.2957 10 8 1.8986 3.4980 -1.2433 11 7 3.5796 4.7858 -1.9050 12 6 2.6596 5.7560 -2.5037 13 6 2.4004 5.3821 -3.9404 14 1 2.8741 4.5093 -4.3651 15 6 1.5547 6.1512 -4.7112 16 7 1.3282 5.8247 -5.9649 17 14 0.7296 7.6564 -3.9744 18 1 1.5948 8.8457 -4.1799 19 1 -0.5807 7.8771 -4.6376 20 1 0.5185 7.4431 -2.5200 21 6 5.0257 5.0117 -1.9685 22 6 5.4720 5.8078 -0.7405 23 6 6.9966 5.9365 -0.7426 24 6 4.8424 7.2017 -0.7798 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 5.0078 2.3646 1.3287 31 1 3.3754 3.2195 1.4046 32 1 3.1027 6.7510 -2.4615 33 1 1.7194 5.7534 -1.9523 34 1 0.7329 6.3656 -6.5070 35 1 5.5429 4.0525 -1.9873 36 1 5.2665 5.5722 -2.8719 37 1 5.1523 5.2901 0.1639 38 1 7.3162 6.4542 -1.6470 39 1 7.3145 6.5040 0.1320 40 1 7.4451 4.9435 -0.7146 41 1 5.1607 7.7689 0.0948 42 1 5.1620 7.7194 -1.6841 43 1 3.7562 7.1099 -0.7782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690006305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = -79.583074 kcal Electronic energy + Delta-G solvation = -21805.190346 eV Core-core repulsion = 18657.724207 eV Total energy + Delta-G solvation = -3147.466139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07857 -39.08960 -37.65733 -36.08968 -35.22920 -34.12746 -31.67545 -30.50937 -27.96750 -26.90121 -25.81617 -23.74650 -23.28111 -22.88787 -21.35906 -19.64010 -19.14715 -18.50124 -17.47578 -16.76318 -16.40356 -16.37017 -16.11849 -15.60760 -15.16886 -14.89724 -14.61993 -14.37010 -13.93727 -13.76223 -13.56497 -13.50244 -13.29252 -13.12948 -12.98825 -12.95585 -12.59036 -12.49657 -12.21830 -12.07550 -11.89413 -11.84531 -11.80335 -11.56855 -11.55080 -11.27099 -10.82931 -10.46662 -9.96635 -9.27224 -8.36105 -6.39724 1.26408 1.31508 1.42596 1.78527 2.28189 2.34655 2.67974 2.97000 2.97869 3.68595 3.86455 3.96646 4.01408 4.07981 4.18337 4.20715 4.26239 4.42044 4.49912 4.51549 4.67526 4.70680 4.75290 4.82183 4.87991 4.90480 4.94327 4.97295 5.02201 5.08979 5.12716 5.15148 5.25970 5.30549 5.45462 5.47144 5.54996 5.74947 6.25733 6.47321 6.60821 6.82123 7.21492 7.58861 8.81242 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.007275 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.287365 B = 3847.754637 C = 5483.532237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.368 6.368 4 C 0.036 3.964 5 H 0.153 0.847 6 C -0.134 4.134 7 C -0.206 4.206 8 H 0.153 0.847 9 C 0.520 3.480 10 O -0.576 6.576 11 N -0.598 5.598 12 C 0.229 3.771 13 C -0.533 4.533 14 H 0.026 0.974 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.943 3.057 18 H -0.248 1.248 19 H -0.279 1.279 20 H -0.261 1.261 21 C 0.112 3.888 22 C -0.104 4.104 23 C -0.135 4.135 24 C -0.153 4.153 25 H 0.034 0.966 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.009 0.991 34 H 0.268 0.732 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.053 -6.557 16.551 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.286 6.286 4 C -0.022 4.022 5 H 0.170 0.830 6 C -0.171 4.171 7 C -0.227 4.227 8 H 0.170 0.830 9 C 0.309 3.691 10 O -0.455 6.455 11 N -0.328 5.328 12 C 0.106 3.894 13 C -0.572 4.572 14 H 0.045 0.955 15 C -0.186 4.186 16 N -0.586 5.586 17 Si 0.765 3.235 18 H -0.172 1.172 19 H -0.205 1.205 20 H -0.185 1.185 21 C -0.011 4.011 22 C -0.124 4.124 23 C -0.193 4.193 24 C -0.210 4.210 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.173 0.827 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.194 -6.426 16.402 20.872 hybrid contribution -0.897 0.589 -0.782 1.328 sum 10.297 -5.837 15.620 19.598 Atomic orbital electron populations 1.21742 0.94145 1.03101 1.01687 1.22715 0.95751 0.83135 1.01014 1.88183 1.19263 1.27377 1.93788 1.23028 0.82725 0.94317 1.02153 0.82959 1.23478 1.03868 1.00601 0.89144 1.22838 1.01373 0.99834 0.98641 0.82990 1.20342 0.88619 0.81940 0.78220 1.90683 1.18406 1.76049 1.60382 1.47923 1.07892 1.22222 1.54774 1.19300 0.89605 0.89232 0.91215 1.21609 1.27955 1.11426 0.96209 0.95535 1.25814 0.96469 1.01316 0.94995 1.70047 1.38370 1.41356 1.08780 0.85787 0.78761 0.79693 0.79246 1.17158 1.20459 1.18526 1.21850 0.78894 1.01396 0.98916 1.21508 0.97378 0.95810 0.97668 1.21719 0.92307 1.02872 1.02403 1.21957 0.99841 0.97143 1.02066 0.94717 0.88273 0.92488 0.93161 0.90633 0.82689 0.90130 0.93236 0.97338 0.92291 0.88768 0.91686 0.90745 0.92727 0.91305 0.90949 0.91099 0.92902 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 10.28 71.98 0.74 -3.11 16 2 C 0.05 1.28 6.53 71.98 0.47 1.75 16 3 O -0.37 -12.90 8.48 -127.82 -1.08 -13.98 16 4 C 0.04 0.96 6.41 30.62 0.20 1.15 16 5 H 0.15 2.63 7.93 -2.38 -0.02 2.61 16 6 C -0.13 -2.96 10.19 30.62 0.31 -2.64 16 7 C -0.21 -6.04 5.28 -11.55 -0.06 -6.11 16 8 H 0.15 3.44 6.44 -2.39 -0.02 3.43 16 9 C 0.52 22.91 7.46 87.66 0.65 23.56 16 10 O -0.58 -31.80 14.50 18.12 0.26 -31.54 16 11 N -0.60 -25.87 2.28 -826.15 -1.88 -27.75 16 12 C 0.23 11.90 3.30 85.64 0.28 12.19 16 13 C -0.53 -33.05 9.94 25.60 0.25 -32.79 16 14 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 15 C 0.01 0.73 5.47 84.65 0.46 1.19 16 16 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 17 Si 0.94 46.63 27.47 68.60 1.88 48.51 16 18 H -0.25 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.26 -12.71 6.53 99.48 0.65 -12.06 16 21 C 0.11 3.53 4.73 86.38 0.41 3.94 16 22 C -0.10 -2.55 3.13 -10.79 -0.03 -2.58 16 23 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 24 C -0.15 -4.22 8.18 71.98 0.59 -3.63 16 25 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 2.37 5.42 -2.39 -0.01 2.35 16 33 H 0.01 0.49 6.46 -2.39 -0.02 0.48 16 34 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 35 H 0.09 2.42 6.00 -2.39 -0.01 2.41 16 36 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.03 1.08 5.89 -2.39 -0.01 1.06 16 Total: -1.00 -85.06 345.94 5.32 -79.74 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.91 Total: 15.19 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.94 Total: -8.74 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -1.58 Total: -89.19 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.82 Total: -45.52 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.88 Total: 48.51 kcal Total: -85.06 5.32 -79.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690006305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.157 kcal (2) G-P(sol) polarization free energy of solvation -85.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds