Wall clock time and date at job start Mon Mar 30 2020 01:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47127 * 2 1 4 4 C 1.42901 * 114.00080 * 179.97438 * 3 2 1 5 5 H 1.08997 * 115.56301 * 4.31972 * 4 3 2 6 6 C 1.53074 * 117.49768 * 218.59605 * 4 3 2 7 7 C 1.52995 * 59.98678 * 252.51697 * 6 4 3 8 8 H 1.09004 * 117.49416 * 107.50181 * 7 6 4 9 9 C 1.50696 * 117.49880 * 252.49447 * 7 6 4 10 10 O 1.21286 * 119.99938 * 68.74966 * 9 7 6 11 11 N 1.34782 * 120.00207 * 248.74942 * 9 7 6 12 12 C 1.46498 * 119.99909 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.46983 * 270.00120 * 12 11 9 14 14 H 1.07999 * 120.00538 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99661 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.46498 * 119.99816 * 359.97438 * 11 9 7 22 22 C 1.52991 * 109.47198 * 270.00064 * 21 11 9 23 23 C 1.53009 * 109.47260 * 175.00057 * 22 21 11 24 24 C 1.53002 * 109.47280 * 294.99831 * 22 21 11 25 25 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47292 * 300.00157 * 1 2 3 27 27 H 1.08998 * 109.47227 * 60.00331 * 1 2 3 28 28 H 1.08999 * 109.47292 * 239.99843 * 2 1 3 29 29 H 1.09006 * 109.47210 * 119.99966 * 2 1 3 30 30 H 1.09001 * 117.51079 * 145.02998 * 6 4 3 31 31 H 1.09000 * 117.49060 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.46847 * 149.99819 * 12 11 9 33 33 H 1.09000 * 109.46849 * 30.00199 * 12 11 9 34 34 H 0.97001 * 119.99697 * 359.97438 * 16 15 13 35 35 H 1.09000 * 109.47042 * 30.00009 * 21 11 9 36 36 H 1.09000 * 109.46534 * 149.99837 * 21 11 9 37 37 H 1.09006 * 109.47456 * 55.00123 * 22 21 11 38 38 H 1.09005 * 109.46582 * 60.00165 * 23 22 21 39 39 H 1.08997 * 109.46843 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.46784 * 300.00066 * 23 22 21 41 41 H 1.08998 * 109.47004 * 179.97438 * 24 22 21 42 42 H 1.08998 * 109.47036 * 300.00227 * 24 22 21 43 43 H 1.09004 * 109.46470 * 60.00181 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5198 -0.0731 6 6 4.0512 2.5739 0.8477 7 6 4.0425 2.6874 -0.6780 8 1 3.3583 3.4086 -1.1251 9 6 5.3542 2.5037 -1.3969 10 8 5.8837 1.4129 -1.4232 11 7 5.9389 3.5516 -2.0106 12 6 7.2143 3.3731 -2.7089 13 6 8.3506 3.6230 -1.7512 14 1 8.1436 3.8886 -0.7251 15 6 9.6547 3.5135 -2.1853 16 7 9.9069 3.1905 -3.4350 17 14 11.0633 3.8239 -0.9984 18 1 11.4396 2.5507 -0.3328 19 1 10.6388 4.8114 0.0263 20 1 12.2315 4.3563 -1.7448 21 6 5.2990 4.8691 -1.9793 22 6 4.3665 5.0119 -3.1838 23 6 3.6048 6.3353 -3.0851 24 6 5.1912 4.9931 -4.4723 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.0056 2.3662 1.3316 31 1 3.3725 3.2199 1.4046 32 1 7.2762 4.0779 -3.5381 33 1 7.2792 2.3547 -3.0921 34 1 9.1754 3.0289 -4.0512 35 1 4.7228 4.9714 -1.0597 36 1 6.0634 5.6452 -2.0175 37 1 3.6571 4.1843 -3.1943 38 1 4.3143 7.1628 -3.0747 39 1 2.9409 6.4371 -3.9435 40 1 3.0173 6.3487 -2.1671 41 1 4.5268 5.0943 -5.3304 42 1 5.9006 5.8206 -4.4618 43 1 5.7338 4.0503 -4.5426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690006311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:12 Heat of formation + Delta-G solvation = -72.144845 kcal Electronic energy + Delta-G solvation = -21456.438529 eV Core-core repulsion = 18309.294935 eV Total energy + Delta-G solvation = -3147.143593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.72791 -38.11324 -36.46965 -34.94323 -33.70743 -32.36530 -30.90348 -27.75163 -26.80322 -25.57303 -23.97408 -22.99780 -22.19145 -21.77632 -20.20327 -18.46995 -17.43310 -16.85712 -15.99486 -15.70692 -15.62007 -14.72551 -14.65056 -14.29872 -13.75367 -13.50485 -13.34406 -12.89332 -12.73567 -12.58404 -12.34022 -12.21292 -12.07971 -11.94909 -11.64877 -11.51505 -11.28600 -11.00862 -10.89621 -10.80340 -10.71103 -10.51807 -10.39965 -10.28340 -10.11533 -9.26178 -9.09304 -8.92139 -8.36015 -7.59524 -6.37078 -4.08629 3.07609 3.29680 3.44214 3.47565 3.62592 3.89151 4.17061 4.54295 4.87351 4.91489 4.94475 5.01041 5.05392 5.11970 5.16536 5.23987 5.32135 5.36978 5.41401 5.50593 5.67620 5.71904 5.73827 5.80444 5.81868 5.85579 5.95051 6.06445 6.09688 6.12764 6.14656 6.26741 6.51543 6.60116 6.88182 7.14049 7.19055 7.43895 8.06498 8.31221 8.45227 8.79256 9.01880 9.60714 11.00141 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.005302 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.366395 B = 5279.463875 C = 6328.514842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.047 3.953 5 H 0.123 0.877 6 C -0.157 4.157 7 C -0.187 4.187 8 H 0.124 0.876 9 C 0.536 3.464 10 O -0.545 6.545 11 N -0.584 5.584 12 C 0.233 3.767 13 C -0.605 4.605 14 H 0.051 0.949 15 C 0.020 3.980 16 N -0.911 5.911 17 Si 1.073 2.927 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.284 1.284 21 C 0.117 3.883 22 C -0.115 4.115 23 C -0.143 4.143 24 C -0.148 4.148 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.112 1.320 4.794 17.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.277 6.277 4 C -0.012 4.012 5 H 0.141 0.859 6 C -0.195 4.195 7 C -0.208 4.208 8 H 0.141 0.859 9 C 0.323 3.677 10 O -0.424 6.424 11 N -0.314 5.314 12 C 0.113 3.887 13 C -0.644 4.644 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.547 5.547 17 Si 0.902 3.098 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.209 1.209 21 C -0.007 4.007 22 C -0.135 4.135 23 C -0.201 4.201 24 C -0.205 4.205 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.270 0.950 4.872 16.057 hybrid contribution -1.569 -0.059 -0.164 1.579 sum -16.839 0.891 4.708 17.508 Atomic orbital electron populations 1.21747 0.93731 1.02243 1.03046 1.22539 0.95294 0.83553 1.00577 1.87776 1.19024 1.26827 1.94100 1.22625 0.81359 0.94664 1.02508 0.85919 1.23403 1.02818 1.01830 0.91400 1.22791 0.98321 1.03302 0.96435 0.85856 1.19344 0.84602 0.84535 0.79258 1.90652 1.65241 1.25520 1.60963 1.47890 1.23129 1.07617 1.52729 1.19465 0.79318 0.97330 0.92580 1.22292 0.92419 1.51773 0.97927 0.93077 1.25787 0.99674 0.94034 0.98959 1.70776 1.35924 1.43752 1.04219 0.83483 0.75267 0.76556 0.74539 1.21412 1.21541 1.20941 1.21547 0.96054 0.86278 0.96865 1.21604 0.97473 0.97903 0.96496 1.21774 0.99874 0.97076 1.01341 1.21921 0.99625 1.03000 0.95969 0.91042 0.91904 0.91862 0.92959 0.93061 0.87492 0.87589 0.95126 0.95163 0.92240 0.91299 0.90020 0.91501 0.92473 0.92788 0.92813 0.93467 0.92519 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.15 0.38 -0.91 16 2 C 0.06 0.62 6.53 37.15 0.24 0.86 16 3 O -0.36 -5.00 10.60 -35.23 -0.37 -5.37 16 4 C 0.05 0.71 5.96 -26.69 -0.16 0.55 16 5 H 0.12 1.96 7.45 -51.93 -0.39 1.57 16 6 C -0.16 -2.25 10.19 -26.70 -0.27 -2.52 16 7 C -0.19 -3.08 4.74 -91.77 -0.44 -3.51 16 8 H 0.12 1.83 6.57 -51.93 -0.34 1.49 16 9 C 0.54 11.52 7.46 -10.98 -0.08 11.44 16 10 O -0.55 -13.98 15.84 5.55 0.09 -13.89 16 11 N -0.58 -12.54 2.28 -175.07 -0.40 -12.94 16 12 C 0.23 6.03 3.54 -5.20 -0.02 6.01 16 13 C -0.61 -17.40 9.39 -34.44 -0.32 -17.72 16 14 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 15 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 16 N -0.91 -27.81 13.65 55.43 0.76 -27.06 16 17 Si 1.07 25.80 29.90 -169.99 -5.08 20.71 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.12 1.97 4.53 -4.05 -0.02 1.95 16 22 C -0.12 -1.65 2.97 -90.62 -0.27 -1.92 16 23 C -0.14 -1.62 9.19 37.16 0.34 -1.28 16 24 C -0.15 -2.29 8.18 37.16 0.30 -1.99 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.03 0.78 5.84 -51.93 -0.30 0.48 16 33 H 0.03 0.89 7.29 -51.93 -0.38 0.51 16 34 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 35 H 0.07 1.02 6.64 -51.93 -0.34 0.68 16 36 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 37 H 0.07 0.98 7.58 -51.93 -0.39 0.59 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.19 5.89 -51.93 -0.31 0.88 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -33.28 350.09 -7.59 -40.87 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.45 Total: 0.94 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.40 Total: -8.55 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.36 Total: -40.00 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.29 Total: -19.26 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.28 -7.59 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690006311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.274 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds