Wall clock time and date at job start Mon Mar 30 2020 01:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47127 * 2 1 4 4 C 1.42901 * 114.00080 * 179.97438 * 3 2 1 5 5 H 1.08997 * 115.56301 * 4.31972 * 4 3 2 6 6 C 1.53074 * 117.49768 * 218.59605 * 4 3 2 7 7 C 1.52995 * 59.98678 * 252.51697 * 6 4 3 8 8 H 1.09004 * 117.49416 * 107.50181 * 7 6 4 9 9 C 1.50696 * 117.49880 * 252.49447 * 7 6 4 10 10 O 1.21286 * 119.99938 * 68.74966 * 9 7 6 11 11 N 1.34782 * 120.00207 * 248.74942 * 9 7 6 12 12 C 1.46498 * 119.99909 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.46983 * 270.00120 * 12 11 9 14 14 H 1.07999 * 120.00538 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99661 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 C 1.46498 * 119.99816 * 359.97438 * 11 9 7 22 22 C 1.52991 * 109.47198 * 270.00064 * 21 11 9 23 23 C 1.53009 * 109.47260 * 175.00057 * 22 21 11 24 24 C 1.53002 * 109.47280 * 294.99831 * 22 21 11 25 25 H 1.09003 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47292 * 300.00157 * 1 2 3 27 27 H 1.08998 * 109.47227 * 60.00331 * 1 2 3 28 28 H 1.08999 * 109.47292 * 239.99843 * 2 1 3 29 29 H 1.09006 * 109.47210 * 119.99966 * 2 1 3 30 30 H 1.09001 * 117.51079 * 145.02998 * 6 4 3 31 31 H 1.09000 * 117.49060 * 0.02562 * 6 4 3 32 32 H 1.09002 * 109.46847 * 149.99819 * 12 11 9 33 33 H 1.09000 * 109.46849 * 30.00199 * 12 11 9 34 34 H 0.97001 * 119.99697 * 359.97438 * 16 15 13 35 35 H 1.09000 * 109.47042 * 30.00009 * 21 11 9 36 36 H 1.09000 * 109.46534 * 149.99837 * 21 11 9 37 37 H 1.09006 * 109.47456 * 55.00123 * 22 21 11 38 38 H 1.09005 * 109.46582 * 60.00165 * 23 22 21 39 39 H 1.08997 * 109.46843 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.46784 * 300.00066 * 23 22 21 41 41 H 1.08998 * 109.47004 * 179.97438 * 24 22 21 42 42 H 1.08998 * 109.47036 * 300.00227 * 24 22 21 43 43 H 1.09004 * 109.46470 * 60.00181 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5198 -0.0731 6 6 4.0512 2.5739 0.8477 7 6 4.0425 2.6874 -0.6780 8 1 3.3583 3.4086 -1.1251 9 6 5.3542 2.5037 -1.3969 10 8 5.8837 1.4129 -1.4232 11 7 5.9389 3.5516 -2.0106 12 6 7.2143 3.3731 -2.7089 13 6 8.3506 3.6230 -1.7512 14 1 8.1436 3.8886 -0.7251 15 6 9.6547 3.5135 -2.1853 16 7 9.9069 3.1905 -3.4350 17 14 11.0633 3.8239 -0.9984 18 1 11.4396 2.5507 -0.3328 19 1 10.6388 4.8114 0.0263 20 1 12.2315 4.3563 -1.7448 21 6 5.2990 4.8691 -1.9793 22 6 4.3665 5.0119 -3.1838 23 6 3.6048 6.3353 -3.0851 24 6 5.1912 4.9931 -4.4723 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.0056 2.3662 1.3316 31 1 3.3725 3.2199 1.4046 32 1 7.2762 4.0779 -3.5381 33 1 7.2792 2.3547 -3.0921 34 1 9.1754 3.0289 -4.0512 35 1 4.7228 4.9714 -1.0597 36 1 6.0634 5.6452 -2.0175 37 1 3.6571 4.1843 -3.1943 38 1 4.3143 7.1628 -3.0747 39 1 2.9409 6.4371 -3.9435 40 1 3.0173 6.3487 -2.1671 41 1 4.5268 5.0943 -5.3304 42 1 5.9006 5.8206 -4.4618 43 1 5.7338 4.0503 -4.5426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690006311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:11 Heat of formation + Delta-G solvation = -92.764268 kcal Electronic energy + Delta-G solvation = -21457.332654 eV Core-core repulsion = 18309.294935 eV Total energy + Delta-G solvation = -3148.037719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28427 -39.33179 -37.94491 -36.23223 -35.55640 -34.19165 -31.74407 -29.62954 -28.00445 -27.04335 -25.86944 -23.82037 -23.78838 -23.10367 -21.44887 -20.05312 -19.09570 -18.57656 -17.48601 -17.18582 -16.52797 -16.34949 -15.91300 -15.75089 -15.60435 -14.86160 -14.80935 -14.38816 -13.92161 -13.72471 -13.66385 -13.54451 -13.35490 -13.20215 -13.07161 -13.03880 -12.57806 -12.53569 -12.20484 -12.16277 -11.95978 -11.93864 -11.80695 -11.71782 -11.57865 -11.15255 -10.79182 -10.61599 -10.23049 -9.46878 -8.69698 -6.45338 1.47518 1.52442 1.57565 1.75374 1.98565 2.49547 2.56335 2.82350 3.09528 3.56813 3.68538 3.82477 3.93728 3.97549 4.01092 4.15335 4.16174 4.30359 4.41431 4.48411 4.54810 4.59340 4.67249 4.72653 4.80755 4.84138 4.86557 4.91501 4.96647 5.00246 5.01410 5.04146 5.20107 5.26123 5.34147 5.41361 5.60183 5.83017 6.13237 6.14159 6.44197 6.63725 7.24463 7.37891 8.64706 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.005302 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.366395 B = 5279.463875 C = 6328.514842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.362 6.362 4 C 0.051 3.949 5 H 0.107 0.893 6 C -0.136 4.136 7 C -0.193 4.193 8 H 0.147 0.853 9 C 0.526 3.474 10 O -0.600 6.600 11 N -0.588 5.588 12 C 0.247 3.753 13 C -0.617 4.617 14 H 0.044 0.956 15 C -0.031 4.031 16 N -0.931 5.931 17 Si 1.120 2.880 18 H -0.281 1.281 19 H -0.266 1.266 20 H -0.275 1.275 21 C 0.112 3.888 22 C -0.108 4.108 23 C -0.135 4.135 24 C -0.147 4.147 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.032 0.968 33 H -0.015 1.015 34 H 0.254 0.746 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.161 2.844 6.514 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.281 6.281 4 C -0.008 4.008 5 H 0.125 0.875 6 C -0.173 4.173 7 C -0.214 4.214 8 H 0.165 0.835 9 C 0.316 3.684 10 O -0.483 6.483 11 N -0.316 5.316 12 C 0.126 3.874 13 C -0.656 4.656 14 H 0.063 0.937 15 C -0.229 4.229 16 N -0.568 5.568 17 Si 0.941 3.059 18 H -0.207 1.207 19 H -0.191 1.191 20 H -0.201 1.201 21 C -0.010 4.010 22 C -0.127 4.127 23 C -0.193 4.193 24 C -0.204 4.204 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.158 0.842 32 H 0.050 0.950 33 H 0.003 0.997 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.376 2.510 6.590 18.753 hybrid contribution -0.990 -0.595 -0.744 1.374 sum -18.367 1.915 5.847 19.370 Atomic orbital electron populations 1.21754 0.91622 1.03708 1.03111 1.22819 0.96971 0.82339 1.00882 1.87768 1.17696 1.28599 1.94059 1.22477 0.82225 0.93846 1.02230 0.87543 1.23500 1.02818 1.01298 0.89698 1.22671 0.95814 1.05298 0.97587 0.83518 1.20256 0.86030 0.83516 0.78640 1.90614 1.67172 1.27583 1.62886 1.47928 1.21875 1.09775 1.52050 1.18982 0.81323 0.94563 0.92546 1.22591 0.93602 1.51431 0.97950 0.93717 1.27348 1.02833 0.93040 0.99689 1.70900 1.35405 1.45468 1.05048 0.82904 0.72565 0.77290 0.73119 1.20700 1.19104 1.20054 1.21856 0.96239 0.83343 0.99592 1.21547 0.96807 1.00081 0.94279 1.21723 0.99841 0.94658 1.03050 1.21898 0.99908 1.00621 0.98011 0.88927 0.91409 0.92167 0.93521 0.92027 0.88480 0.84221 0.95050 0.99664 0.93629 0.88384 0.91140 0.91452 0.92248 0.91302 0.90915 0.91154 0.93005 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.05 0.93 6.53 71.98 0.47 1.40 16 3 O -0.36 -9.34 10.60 -148.98 -1.58 -10.92 16 4 C 0.05 1.50 5.96 30.62 0.18 1.68 16 5 H 0.11 3.46 7.45 -2.39 -0.02 3.45 16 6 C -0.14 -3.58 10.19 30.62 0.31 -3.26 16 7 C -0.19 -6.08 4.74 -11.54 -0.05 -6.13 16 8 H 0.15 3.91 6.57 -2.38 -0.02 3.90 16 9 C 0.53 23.15 7.46 87.65 0.65 23.81 16 10 O -0.60 -32.37 15.84 -3.05 -0.05 -32.41 16 11 N -0.59 -25.87 2.28 -826.18 -1.88 -27.76 16 12 C 0.25 13.52 3.54 85.63 0.30 13.82 16 13 C -0.62 -36.53 9.39 25.60 0.24 -36.29 16 14 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 15 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 16 N -0.93 -58.68 13.65 21.45 0.29 -58.39 16 17 Si 1.12 51.91 29.90 68.60 2.05 53.97 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.11 3.67 4.53 86.38 0.39 4.06 16 22 C -0.11 -2.92 2.97 -10.79 -0.03 -2.95 16 23 C -0.14 -2.60 9.19 71.99 0.66 -1.93 16 24 C -0.15 -4.56 8.18 71.98 0.59 -3.97 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.03 1.70 5.84 -2.39 -0.01 1.69 16 33 H -0.01 -0.92 7.29 -2.39 -0.02 -0.94 16 34 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 35 H 0.10 2.64 6.64 -2.39 -0.02 2.63 16 36 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 37 H 0.07 1.85 7.58 -2.38 -0.02 1.83 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 1.01 5.89 -2.38 -0.01 1.00 16 Total: -1.00 -75.66 350.09 4.82 -70.85 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.06 Total: 17.22 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.92 Total: -12.54 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.59 Total: -86.15 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.63 Total: -43.34 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.05 Total: 53.97 kcal Total: -75.66 4.82 -70.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690006311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.919 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds