Wall clock time and date at job start Mon Mar 30 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99573 * 2 1 4 4 C 1.50705 * 109.46997 * 55.35035 * 3 2 1 5 5 O 1.21277 * 120.00123 * 234.09847 * 4 3 2 6 6 N 1.34771 * 119.99765 * 54.10191 * 4 3 2 7 7 C 1.46506 * 120.00551 * 354.92976 * 6 4 3 8 8 C 1.46503 * 119.99800 * 174.93087 * 6 4 3 9 9 H 1.08998 * 109.47180 * 359.97438 * 8 6 4 10 10 C 1.53002 * 109.47132 * 239.99661 * 8 6 4 11 11 C 1.50699 * 109.47197 * 120.00006 * 8 6 4 12 12 H 1.07995 * 120.00094 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99875 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99966 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99986 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46745 * 60.00614 * 15 13 11 17 17 H 1.48495 * 109.47412 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47253 * 300.00728 * 15 13 11 19 19 C 1.53001 * 109.47042 * 295.35079 * 3 2 1 20 20 C 1.52993 * 109.47250 * 299.99812 * 19 3 2 21 21 C 1.52996 * 109.47536 * 300.00161 * 20 19 3 22 22 C 1.53001 * 109.46982 * 59.99675 * 21 20 19 23 23 C 1.52999 * 109.47239 * 175.35129 * 3 2 1 24 24 H 1.09003 * 109.46625 * 182.04662 * 1 2 3 25 25 H 1.08997 * 109.47487 * 302.04777 * 1 2 3 26 26 H 1.08999 * 109.46918 * 62.05286 * 1 2 3 27 27 H 1.08999 * 109.47203 * 84.48378 * 7 6 4 28 28 H 1.08994 * 109.47217 * 204.48973 * 7 6 4 29 29 H 1.09006 * 109.46313 * 324.48899 * 7 6 4 30 30 H 1.09000 * 109.47236 * 179.97438 * 10 8 6 31 31 H 1.08998 * 109.47340 * 300.00211 * 10 8 6 32 32 H 1.09006 * 109.46689 * 60.00176 * 10 8 6 33 33 H 0.97000 * 119.99595 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47166 * 60.00063 * 19 3 2 35 35 H 1.09001 * 109.46906 * 179.97438 * 19 3 2 36 36 H 1.09001 * 109.47328 * 180.02562 * 20 19 3 37 37 H 1.09009 * 109.46864 * 60.00108 * 20 19 3 38 38 H 1.09002 * 109.47086 * 300.00278 * 21 20 19 39 39 H 1.08998 * 109.47683 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47166 * 180.02562 * 22 21 20 41 41 H 1.09009 * 109.47099 * 60.00248 * 22 21 20 42 42 H 1.08995 * 109.47322 * 179.97438 * 23 3 2 43 43 H 1.08998 * 109.46884 * 300.00402 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4764 2.0930 1.1689 5 8 0.9651 3.1775 0.9866 6 7 1.5675 1.5920 2.4167 7 6 2.0831 0.2368 2.6263 8 6 1.1508 2.4027 3.5637 9 1 0.7990 3.3732 3.2140 10 6 2.3392 2.6010 4.5067 11 6 0.0386 1.6995 4.2982 12 1 -0.3221 0.7445 3.9458 13 6 -0.5184 2.2754 5.4204 14 7 -0.0795 3.4386 5.8493 15 14 -1.8975 1.4041 6.3305 16 1 -1.4182 0.0815 6.8065 17 1 -2.3198 2.2257 7.4932 18 1 -3.0511 1.2125 5.4152 19 6 1.6533 2.0226 -1.3036 20 6 2.1952 1.2233 -2.4902 21 6 3.7160 1.1045 -2.3734 22 6 4.0729 0.3874 -1.0698 23 6 3.5311 1.1868 0.1169 24 1 -0.3633 -1.0271 0.0367 25 1 -0.3634 0.5453 0.8710 26 1 -0.3633 0.4816 -0.9078 27 1 3.1722 0.2638 2.6615 28 1 1.6988 -0.1567 3.5672 29 1 1.7620 -0.4049 1.8058 30 1 2.0293 3.2045 5.3598 31 1 2.6915 1.6306 4.8564 32 1 3.1437 3.1097 3.9753 33 1 -0.4717 3.8438 6.6385 34 1 0.5698 2.1073 -1.3869 35 1 2.0962 3.0186 -1.3034 36 1 1.9414 1.7343 -3.4189 37 1 1.7519 0.2274 -2.4902 38 1 4.1593 2.1003 -2.3733 39 1 4.1021 0.5346 -3.2185 40 1 5.1565 0.3031 -0.9863 41 1 3.6296 -0.6085 -1.0698 42 1 3.9744 2.1826 0.1165 43 1 3.7853 0.6759 1.0456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692025455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:41 Heat of formation + Delta-G solvation = -88.393029 kcal Electronic energy + Delta-G solvation = -22876.979140 eV Core-core repulsion = 19729.130972 eV Total energy + Delta-G solvation = -3147.848168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54978 -37.67953 -35.92005 -35.29588 -32.82286 -30.91742 -30.22046 -29.04437 -26.35474 -26.05879 -25.21072 -23.48611 -22.55352 -20.87472 -19.55235 -18.54199 -16.71757 -16.42588 -16.00323 -15.68615 -15.12845 -14.99765 -14.49379 -14.05213 -13.69423 -13.49717 -13.26888 -12.62141 -12.56738 -12.43167 -12.26048 -11.93998 -11.86257 -11.58300 -11.38569 -11.18933 -11.04634 -10.97094 -10.85468 -10.72320 -10.49826 -10.43190 -10.26546 -10.22156 -10.14843 -9.55807 -9.14592 -8.57582 -8.38337 -7.52582 -6.06347 -4.14179 3.19192 3.28018 3.33037 3.34810 3.81918 4.07588 4.39927 4.73585 4.82265 4.91412 5.22502 5.24862 5.27724 5.31153 5.47469 5.57132 5.59246 5.67165 5.69543 5.81411 5.92673 5.99989 6.06025 6.13580 6.14325 6.15803 6.25670 6.30186 6.40853 6.49840 6.60417 6.76751 6.85177 7.07757 7.19810 7.47888 7.54996 7.72836 8.02419 8.21661 8.56059 8.83149 9.04435 9.52006 10.98916 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.005641 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.792016 B = 4962.681311 C = 5164.802256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.362 6.362 3 C 0.108 3.892 4 C 0.482 3.518 5 O -0.550 6.550 6 N -0.580 5.580 7 C 0.064 3.936 8 C 0.255 3.745 9 H 0.060 0.940 10 C -0.145 4.145 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.126 4.126 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.110 4.110 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -7.446 -12.824 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.281 6.281 3 C 0.066 3.934 4 C 0.267 3.733 5 O -0.429 6.429 6 N -0.311 5.311 7 C -0.079 4.079 8 C 0.155 3.845 9 H 0.078 0.922 10 C -0.204 4.204 11 C -0.562 4.562 12 H 0.076 0.924 13 C -0.138 4.138 14 N -0.526 5.526 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.164 4.164 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.147 4.147 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.508 -6.904 -12.720 15.869 hybrid contribution -0.976 -0.231 0.739 1.246 sum 5.532 -7.136 -11.981 15.002 Atomic orbital electron populations 1.22853 0.80946 1.02681 1.01154 1.87852 1.19956 1.26083 1.94234 1.21760 0.94901 0.83399 0.93364 1.20958 0.80311 0.87022 0.84971 1.90646 1.44836 1.22552 1.84844 1.48224 1.60699 1.15452 1.06693 1.22097 0.97367 0.84465 1.03967 1.18953 0.92316 0.92183 0.81063 0.92174 1.22075 0.96438 0.99949 1.01893 1.21265 1.18058 1.06103 1.10804 0.92354 1.24895 0.96954 0.94917 0.97014 1.69873 1.41962 1.16218 1.24583 0.86560 0.82271 0.79431 0.79141 1.20224 1.21179 1.20299 1.21828 1.01930 0.99523 0.93092 1.21466 0.95706 1.00681 0.97271 1.21548 0.96107 1.00516 0.97506 1.21443 0.99954 0.99795 0.93758 1.21660 0.91175 1.01692 1.00202 0.89539 0.92742 0.93825 0.94347 0.90606 0.89625 0.88881 0.95126 0.97147 0.92666 0.91205 0.90388 0.92182 0.91445 0.92202 0.92210 0.92059 0.90934 0.90579 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.98 101.05 1.01 1.30 16 2 O -0.36 -5.44 6.30 -35.23 -0.22 -5.67 16 3 C 0.11 1.73 0.27 -91.77 -0.03 1.71 16 4 C 0.48 10.15 4.98 -10.99 -0.05 10.10 16 5 O -0.55 -13.69 15.32 5.56 0.09 -13.60 16 6 N -0.58 -12.61 2.72 -175.26 -0.48 -13.09 16 7 C 0.06 1.16 8.08 59.85 0.48 1.64 16 8 C 0.26 6.60 2.63 -69.08 -0.18 6.42 16 9 H 0.06 1.81 6.91 -51.93 -0.36 1.45 16 10 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 11 C -0.52 -14.24 7.95 -34.44 -0.27 -14.51 16 12 H 0.06 1.56 7.43 -52.49 -0.39 1.17 16 13 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 14 N -0.89 -25.29 11.32 55.43 0.63 -24.67 16 15 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.13 -1.85 3.79 -26.73 -0.10 -1.95 16 20 C -0.11 -1.31 5.78 -26.74 -0.15 -1.46 16 21 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 22 C -0.11 -1.24 5.78 -26.73 -0.15 -1.39 16 23 C -0.11 -1.52 4.79 -26.73 -0.13 -1.64 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.98 6.93 -51.93 -0.36 0.62 16 26 H 0.04 0.59 6.63 -51.93 -0.34 0.25 16 27 H 0.04 0.62 6.55 -51.93 -0.34 0.28 16 28 H 0.08 1.45 7.11 -51.93 -0.37 1.08 16 29 H 0.09 1.41 4.68 -51.93 -0.24 1.16 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 31 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 1.09 6.68 -51.93 -0.35 0.74 16 35 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.78 7.68 -51.92 -0.40 0.38 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.83 7.68 -51.92 -0.40 0.43 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.15 5.33 -51.93 -0.28 0.87 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -30.24 321.42 -6.72 -36.95 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.05 Total: 1.82 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 0.50 Total: -2.71 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.15 Total: -37.75 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.14 Total: -19.27 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.24 -6.72 -36.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692025455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.440 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds