Wall clock time and date at job start Mon Mar 30 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99573 * 2 1 4 4 C 1.50705 * 109.46997 * 55.35035 * 3 2 1 5 5 O 1.21277 * 120.00123 * 234.09847 * 4 3 2 6 6 N 1.34771 * 119.99765 * 54.10191 * 4 3 2 7 7 C 1.46506 * 120.00551 * 354.92976 * 6 4 3 8 8 C 1.46503 * 119.99800 * 174.93087 * 6 4 3 9 9 H 1.08998 * 109.47180 * 359.97438 * 8 6 4 10 10 C 1.53002 * 109.47132 * 239.99661 * 8 6 4 11 11 C 1.50699 * 109.47197 * 120.00006 * 8 6 4 12 12 H 1.07995 * 120.00094 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99875 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99966 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99986 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46745 * 60.00614 * 15 13 11 17 17 H 1.48495 * 109.47412 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47253 * 300.00728 * 15 13 11 19 19 C 1.53001 * 109.47042 * 295.35079 * 3 2 1 20 20 C 1.52993 * 109.47250 * 299.99812 * 19 3 2 21 21 C 1.52996 * 109.47536 * 300.00161 * 20 19 3 22 22 C 1.53001 * 109.46982 * 59.99675 * 21 20 19 23 23 C 1.52999 * 109.47239 * 175.35129 * 3 2 1 24 24 H 1.09003 * 109.46625 * 182.04662 * 1 2 3 25 25 H 1.08997 * 109.47487 * 302.04777 * 1 2 3 26 26 H 1.08999 * 109.46918 * 62.05286 * 1 2 3 27 27 H 1.08999 * 109.47203 * 84.48378 * 7 6 4 28 28 H 1.08994 * 109.47217 * 204.48973 * 7 6 4 29 29 H 1.09006 * 109.46313 * 324.48899 * 7 6 4 30 30 H 1.09000 * 109.47236 * 179.97438 * 10 8 6 31 31 H 1.08998 * 109.47340 * 300.00211 * 10 8 6 32 32 H 1.09006 * 109.46689 * 60.00176 * 10 8 6 33 33 H 0.97000 * 119.99595 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.47166 * 60.00063 * 19 3 2 35 35 H 1.09001 * 109.46906 * 179.97438 * 19 3 2 36 36 H 1.09001 * 109.47328 * 180.02562 * 20 19 3 37 37 H 1.09009 * 109.46864 * 60.00108 * 20 19 3 38 38 H 1.09002 * 109.47086 * 300.00278 * 21 20 19 39 39 H 1.08998 * 109.47683 * 179.97438 * 21 20 19 40 40 H 1.09004 * 109.47166 * 180.02562 * 22 21 20 41 41 H 1.09009 * 109.47099 * 60.00248 * 22 21 20 42 42 H 1.08995 * 109.47322 * 179.97438 * 23 3 2 43 43 H 1.08998 * 109.46884 * 300.00402 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.4764 2.0930 1.1689 5 8 0.9651 3.1775 0.9866 6 7 1.5675 1.5920 2.4167 7 6 2.0831 0.2368 2.6263 8 6 1.1508 2.4027 3.5637 9 1 0.7990 3.3732 3.2140 10 6 2.3392 2.6010 4.5067 11 6 0.0386 1.6995 4.2982 12 1 -0.3221 0.7445 3.9458 13 6 -0.5184 2.2754 5.4204 14 7 -0.0795 3.4386 5.8493 15 14 -1.8975 1.4041 6.3305 16 1 -1.4182 0.0815 6.8065 17 1 -2.3198 2.2257 7.4932 18 1 -3.0511 1.2125 5.4152 19 6 1.6533 2.0226 -1.3036 20 6 2.1952 1.2233 -2.4902 21 6 3.7160 1.1045 -2.3734 22 6 4.0729 0.3874 -1.0698 23 6 3.5311 1.1868 0.1169 24 1 -0.3633 -1.0271 0.0367 25 1 -0.3634 0.5453 0.8710 26 1 -0.3633 0.4816 -0.9078 27 1 3.1722 0.2638 2.6615 28 1 1.6988 -0.1567 3.5672 29 1 1.7620 -0.4049 1.8058 30 1 2.0293 3.2045 5.3598 31 1 2.6915 1.6306 4.8564 32 1 3.1437 3.1097 3.9753 33 1 -0.4717 3.8438 6.6385 34 1 0.5698 2.1073 -1.3869 35 1 2.0962 3.0186 -1.3034 36 1 1.9414 1.7343 -3.4189 37 1 1.7519 0.2274 -2.4902 38 1 4.1593 2.1003 -2.3733 39 1 4.1021 0.5346 -3.2185 40 1 5.1565 0.3031 -0.9863 41 1 3.6296 -0.6085 -1.0698 42 1 3.9744 2.1826 0.1165 43 1 3.7853 0.6759 1.0456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692025455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:40 Heat of formation + Delta-G solvation = -106.828983 kcal Electronic energy + Delta-G solvation = -22877.778583 eV Core-core repulsion = 19729.130972 eV Total energy + Delta-G solvation = -3148.647611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96583 -39.19499 -37.31058 -36.86083 -34.78982 -32.20525 -31.45859 -30.71035 -27.64566 -27.54890 -27.32547 -24.91973 -23.59018 -22.44907 -20.70438 -20.15185 -18.53536 -18.08971 -17.53107 -17.11435 -16.67990 -16.32709 -16.18607 -15.32736 -15.20722 -14.66567 -14.50664 -14.43248 -13.94551 -13.78222 -13.54235 -13.49151 -13.14577 -13.12097 -12.93176 -12.78222 -12.73937 -12.68877 -12.40219 -12.21679 -12.13966 -11.99932 -11.66692 -11.42745 -11.28511 -11.19848 -10.76079 -10.56220 -10.08399 -9.32408 -8.16496 -6.33177 1.39301 1.41756 1.49143 1.58087 2.23457 2.44545 2.72980 3.11121 3.46277 3.71878 3.77510 4.15916 4.24501 4.28067 4.38475 4.47288 4.51929 4.56110 4.59161 4.60575 4.73100 4.74660 4.76796 4.86875 4.89160 5.02745 5.07061 5.09114 5.17055 5.27289 5.28610 5.33612 5.38551 5.43370 5.55124 5.60262 5.64737 5.91414 6.05661 6.14285 6.73593 6.79129 7.25724 7.42485 8.87744 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.005641 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.792016 B = 4962.681311 C = 5164.802256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.352 6.352 3 C 0.119 3.881 4 C 0.473 3.527 5 O -0.600 6.600 6 N -0.586 5.586 7 C 0.066 3.934 8 C 0.259 3.741 9 H 0.005 0.995 10 C -0.130 4.130 11 C -0.537 4.537 12 H 0.059 0.941 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.965 3.035 16 H -0.262 1.262 17 H -0.283 1.283 18 H -0.277 1.277 19 C -0.125 4.125 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.111 4.111 24 H 0.118 0.882 25 H 0.014 0.986 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.640 -10.064 -14.078 18.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.271 6.271 3 C 0.077 3.923 4 C 0.260 3.740 5 O -0.482 6.482 6 N -0.315 5.315 7 C -0.075 4.075 8 C 0.157 3.843 9 H 0.023 0.977 10 C -0.189 4.189 11 C -0.576 4.576 12 H 0.077 0.923 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.203 1.203 19 C -0.163 4.163 20 C -0.144 4.144 21 C -0.156 4.156 22 C -0.142 4.142 23 C -0.148 4.148 24 H 0.137 0.863 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.471 -9.564 -13.985 18.517 hybrid contribution -1.293 0.635 1.110 1.819 sum 6.178 -8.929 -12.875 16.842 Atomic orbital electron populations 1.22927 0.80655 1.04186 0.99801 1.87853 1.20146 1.25123 1.93946 1.21705 0.96247 0.83130 0.91244 1.22023 0.79183 0.86842 0.85927 1.90609 1.46922 1.25052 1.85629 1.48224 1.60724 1.16492 1.06072 1.22265 0.98703 0.82454 1.04128 1.18570 0.92888 0.90455 0.82413 0.97683 1.21856 0.95998 1.00351 1.00662 1.21498 1.18745 1.06181 1.11130 0.92318 1.25747 0.99289 0.95555 0.97863 1.70017 1.43134 1.17528 1.24948 0.85506 0.78979 0.78809 0.77708 1.18651 1.20804 1.20293 1.21835 1.01036 0.99424 0.93999 1.21455 0.96652 1.00282 0.95989 1.21576 0.94980 1.00967 0.98071 1.21437 1.01144 0.99184 0.92460 1.21725 0.89123 1.02080 1.01886 0.86336 0.96694 0.92846 0.91903 0.91710 0.87772 0.91333 0.93540 0.96177 0.92618 0.92852 0.91827 0.90671 0.90951 0.92207 0.89698 0.89905 0.90611 0.91189 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.98 113.37 1.13 1.71 16 2 O -0.35 -9.91 6.30 -148.98 -0.94 -10.85 16 3 C 0.12 3.74 0.27 -11.54 0.00 3.73 16 4 C 0.47 20.50 4.98 87.66 0.44 20.93 16 5 O -0.60 -31.68 15.32 -3.02 -0.05 -31.73 16 6 N -0.59 -25.96 2.72 -826.78 -2.25 -28.21 16 7 C 0.07 2.31 8.08 127.77 1.03 3.34 16 8 C 0.26 13.93 2.63 44.24 0.12 14.05 16 9 H 0.01 0.33 6.91 -2.39 -0.02 0.32 16 10 C -0.13 -6.47 8.97 71.98 0.65 -5.82 16 11 C -0.54 -29.89 7.95 25.60 0.20 -29.68 16 12 H 0.06 3.18 7.43 -2.91 -0.02 3.16 16 13 C 0.02 0.84 5.30 84.66 0.45 1.29 16 14 N -0.92 -53.72 11.32 21.45 0.24 -53.48 16 15 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 16 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 19 C -0.12 -3.61 3.79 30.59 0.12 -3.49 16 20 C -0.11 -2.16 5.78 30.59 0.18 -1.98 16 21 C -0.12 -2.04 5.92 30.59 0.18 -1.86 16 22 C -0.10 -1.94 5.78 30.59 0.18 -1.77 16 23 C -0.11 -2.85 4.79 30.59 0.15 -2.70 16 24 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.01 0.53 6.93 -2.39 -0.02 0.51 16 26 H 0.05 1.40 6.63 -2.39 -0.02 1.38 16 27 H 0.06 1.89 6.55 -2.39 -0.02 1.88 16 28 H 0.06 2.41 7.11 -2.39 -0.02 2.39 16 29 H 0.10 3.23 4.68 -2.38 -0.01 3.22 16 30 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 31 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 32 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.05 1.69 6.68 -2.39 -0.02 1.67 16 35 H 0.06 2.00 8.03 -2.39 -0.02 1.98 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.43 7.68 -2.38 -0.02 1.41 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.40 7.68 -2.38 -0.02 1.38 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.08 2.08 5.33 -2.39 -0.01 2.07 16 Total: -1.00 -68.69 321.42 4.83 -63.86 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.98 Total: 17.03 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.81 Total: -2.26 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.01 Total: -81.69 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.98 Total: -42.58 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.69 4.83 -63.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692025455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.969 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds