Wall clock time and date at job start Mon Mar 30 2020 00:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42907 * 113.99878 * 2 1 4 4 C 1.50696 * 109.46787 * 54.95624 * 3 2 1 5 5 O 1.21289 * 119.99905 * 234.12722 * 4 3 2 6 6 N 1.34771 * 120.00650 * 54.12259 * 4 3 2 7 7 C 1.46509 * 119.99851 * 354.92660 * 6 4 3 8 8 C 1.46501 * 120.00654 * 174.92237 * 6 4 3 9 9 H 1.09006 * 109.46618 * 0.02562 * 8 6 4 10 10 C 1.52998 * 109.46981 * 120.00006 * 8 6 4 11 11 C 1.50698 * 109.47568 * 240.00265 * 8 6 4 12 12 H 1.08000 * 119.99771 * 0.02562 * 11 8 6 13 13 C 1.37875 * 120.00473 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99520 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00142 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47031 * 90.00664 * 15 13 11 17 17 H 1.48505 * 109.46711 * 210.00159 * 15 13 11 18 18 H 1.48500 * 109.47258 * 329.99859 * 15 13 11 19 19 C 1.52999 * 109.47183 * 294.95226 * 3 2 1 20 20 C 1.52996 * 109.47082 * 299.99885 * 19 3 2 21 21 C 1.53000 * 109.47395 * 299.99871 * 20 19 3 22 22 C 1.52999 * 109.46900 * 60.00018 * 21 20 19 23 23 C 1.52999 * 109.47392 * 300.00352 * 22 21 20 24 24 H 1.09005 * 109.47373 * 302.33393 * 1 2 3 25 25 H 1.08996 * 109.47609 * 62.33546 * 1 2 3 26 26 H 1.09004 * 109.47028 * 182.34097 * 1 2 3 27 27 H 1.08995 * 109.47202 * 84.49150 * 7 6 4 28 28 H 1.08993 * 109.47270 * 204.49447 * 7 6 4 29 29 H 1.09001 * 109.46807 * 324.49608 * 7 6 4 30 30 H 1.09005 * 109.46761 * 180.02562 * 10 8 6 31 31 H 1.09001 * 109.47686 * 300.00439 * 10 8 6 32 32 H 1.09006 * 109.47064 * 60.00739 * 10 8 6 33 33 H 0.97000 * 119.99622 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.46868 * 60.00172 * 19 3 2 35 35 H 1.09003 * 109.46731 * 179.97438 * 19 3 2 36 36 H 1.09006 * 109.46726 * 179.97438 * 20 19 3 37 37 H 1.08997 * 109.47183 * 60.00261 * 20 19 3 38 38 H 1.08999 * 109.46573 * 300.00571 * 21 20 19 39 39 H 1.08999 * 109.47090 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.46868 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.46898 * 60.00087 * 22 21 20 42 42 H 1.09004 * 109.46577 * 300.00020 * 23 22 21 43 43 H 1.09001 * 109.47178 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4691 2.0962 1.1632 5 8 0.9584 3.1800 0.9746 6 7 1.5526 1.5990 2.4131 7 6 2.0672 0.2445 2.6298 8 6 1.1288 2.4129 3.5551 9 1 0.7782 3.3821 3.2003 10 6 -0.0047 1.7010 4.2961 11 6 2.2937 2.6113 4.4905 12 1 3.2537 2.1751 4.2573 13 6 2.1341 3.3505 5.6433 14 7 0.9651 3.8821 5.9269 15 14 3.5782 3.5969 6.8023 16 1 4.3202 4.8234 6.4147 17 1 3.0777 3.7399 8.1931 18 1 4.4844 2.4234 6.7205 19 6 1.6616 2.0190 -1.3078 20 6 2.2110 1.2162 -2.4887 21 6 3.7311 1.0977 -2.3619 22 6 4.0796 0.3842 -1.0540 23 6 3.5302 1.1870 0.1269 24 1 -0.3634 0.5497 0.8683 25 1 -0.3634 0.4771 -0.9101 26 1 -0.3633 -1.0268 0.0420 27 1 3.1560 0.2719 2.6718 28 1 1.6771 -0.1464 3.5695 29 1 1.7513 -0.3997 1.8092 30 1 -0.3203 2.3068 5.1456 31 1 -0.8473 1.5575 3.6197 32 1 0.3456 0.7316 4.6509 33 1 0.8527 4.4018 6.7382 34 1 0.5787 2.1034 -1.3982 35 1 2.1046 3.0149 -1.3076 36 1 1.9623 1.7243 -3.4205 37 1 1.7677 0.2204 -2.4888 38 1 4.1743 2.0935 -2.3618 39 1 4.1225 0.5261 -3.2034 40 1 5.1625 0.2994 -0.9639 41 1 3.6363 -0.6115 -1.0541 42 1 3.9736 2.1828 0.1269 43 1 3.7781 0.6784 1.0586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692025456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:42 Heat of formation + Delta-G solvation = -87.810559 kcal Electronic energy + Delta-G solvation = -22872.197576 eV Core-core repulsion = 19724.374666 eV Total energy + Delta-G solvation = -3147.822910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56290 -37.68493 -35.94418 -35.30337 -32.82179 -30.91753 -30.22826 -29.01849 -26.42830 -26.09087 -25.21359 -23.49458 -22.52873 -20.88142 -19.51445 -18.57540 -16.77341 -16.29649 -16.09852 -15.69173 -15.17037 -15.00386 -14.51214 -14.03357 -13.67214 -13.49545 -13.29941 -12.67647 -12.61533 -12.43721 -12.24513 -12.03936 -11.87246 -11.50318 -11.37923 -11.23379 -11.05860 -10.96669 -10.80929 -10.70510 -10.49642 -10.42954 -10.29675 -10.20011 -10.12796 -9.56095 -9.15234 -8.58895 -8.39229 -7.52866 -6.06576 -4.14535 3.16861 3.27163 3.33733 3.36224 3.83876 4.03267 4.40165 4.75000 4.83771 4.92428 5.22567 5.25570 5.28143 5.32136 5.45151 5.54933 5.58626 5.62544 5.69674 5.81481 5.83679 5.99928 6.08748 6.09484 6.16302 6.18649 6.27838 6.31723 6.41183 6.51634 6.54275 6.77928 6.82917 7.05684 7.18322 7.47889 7.53411 7.72730 8.02433 8.20532 8.55928 8.82917 9.03753 9.52010 10.98647 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.005885 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.576159 B = 4756.653944 C = 5127.210060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.362 6.362 3 C 0.109 3.891 4 C 0.483 3.517 5 O -0.551 6.551 6 N -0.580 5.580 7 C 0.067 3.933 8 C 0.255 3.745 9 H 0.061 0.939 10 C -0.145 4.145 11 C -0.523 4.523 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.125 4.125 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.110 4.110 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.009 0.991 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -9.159 -13.173 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.281 6.281 3 C 0.066 3.934 4 C 0.268 3.732 5 O -0.430 6.430 6 N -0.311 5.311 7 C -0.076 4.076 8 C 0.155 3.845 9 H 0.079 0.921 10 C -0.204 4.204 11 C -0.562 4.562 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.527 5.527 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.148 4.148 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.358 -8.651 -13.079 15.858 hybrid contribution 0.567 0.404 0.895 1.134 sum 2.925 -8.248 -12.184 15.001 Atomic orbital electron populations 1.22820 0.81250 1.02554 1.00877 1.87865 1.19702 1.26297 1.94218 1.21771 0.95047 0.83172 0.93372 1.20936 0.80339 0.86963 0.84917 1.90646 1.45245 1.22373 1.84769 1.48228 1.60664 1.15543 1.06637 1.22063 0.98444 0.84129 1.02969 1.18961 0.93299 0.90691 0.81577 0.92147 1.22079 0.96797 1.00001 1.01499 1.21314 0.96246 1.33111 1.05537 0.92295 1.24898 0.95972 0.95259 0.97700 1.69885 1.22519 1.34335 1.25935 0.86495 0.82370 0.78583 0.79945 1.20637 1.21124 1.19905 1.21827 1.01784 0.99644 0.93091 1.21463 0.95757 1.00594 0.97268 1.21548 0.96061 1.00596 0.97493 1.21439 1.00025 0.99707 0.93761 1.21665 0.90984 1.01894 1.00231 0.93339 0.93742 0.89518 0.93773 0.91287 0.89795 0.88863 0.97149 0.95069 0.92722 0.91313 0.90299 0.92195 0.91494 0.92165 0.92225 0.92022 0.91006 0.90399 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.97 101.05 1.01 1.30 16 2 O -0.36 -5.27 6.31 -35.23 -0.22 -5.49 16 3 C 0.11 1.75 0.27 -91.77 -0.03 1.72 16 4 C 0.48 10.17 4.96 -10.99 -0.05 10.12 16 5 O -0.55 -13.68 15.32 5.55 0.09 -13.59 16 6 N -0.58 -12.63 2.71 -175.26 -0.47 -13.10 16 7 C 0.07 1.21 8.35 59.85 0.50 1.71 16 8 C 0.25 6.61 2.62 -69.08 -0.18 6.43 16 9 H 0.06 1.82 6.91 -51.93 -0.36 1.46 16 10 C -0.15 -3.53 8.96 37.16 0.33 -3.20 16 11 C -0.52 -14.30 8.37 -34.44 -0.29 -14.59 16 12 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 13 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 14 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 15 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 19 C -0.13 -1.84 3.80 -26.73 -0.10 -1.94 16 20 C -0.11 -1.30 5.78 -26.73 -0.15 -1.46 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.11 -1.29 5.78 -26.73 -0.15 -1.44 16 23 C -0.11 -1.60 4.79 -26.73 -0.13 -1.73 16 24 H 0.05 0.78 6.90 -51.93 -0.36 0.42 16 25 H 0.04 0.56 6.65 -51.93 -0.35 0.21 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.77 6.55 -51.93 -0.34 0.42 16 28 H 0.07 1.27 6.44 -51.93 -0.33 0.93 16 29 H 0.08 1.33 4.67 -51.93 -0.24 1.09 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.07 1.04 6.70 -51.93 -0.35 0.70 16 35 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.25 5.32 -51.93 -0.28 0.97 16 LS Contribution 320.61 15.07 4.83 4.83 Total: -1.00 -30.38 320.61 -6.65 -37.03 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.98 Total: 1.70 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 0.50 Total: -2.85 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.15 Total: -37.82 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.14 Total: -19.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.38 -6.65 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692025456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.780 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds