Wall clock time and date at job start Mon Mar 30 2020 00:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 N 1.46903 * 109.47473 * 239.99472 * 2 1 3 5 5 C 1.46896 * 110.99855 * 85.00183 * 4 2 1 6 6 C 1.52996 * 109.47075 * 173.89562 * 5 4 2 7 7 C 1.50709 * 115.56268 * 39.61304 * 6 5 4 8 8 H 1.07995 * 119.99955 * 262.49501 * 7 6 5 9 9 C 1.37874 * 119.99627 * 82.49473 * 7 6 5 10 10 N 1.31513 * 120.00272 * 351.33870 * 9 7 6 11 11 Si 1.86802 * 119.99784 * 171.34102 * 9 7 6 12 12 H 1.48502 * 109.47084 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47065 * 119.99745 * 11 9 7 14 14 H 1.48498 * 109.47344 * 240.00056 * 11 9 7 15 15 C 1.53001 * 117.50261 * 185.30562 * 6 5 4 16 16 C 1.52993 * 60.03323 * 107.47712 * 15 6 5 17 17 C 1.50702 * 109.46922 * 119.99485 * 2 1 3 18 18 O 1.20822 * 120.00113 * 120.00096 * 17 2 1 19 19 O 1.34233 * 119.99919 * 300.00089 * 17 2 1 20 20 C 1.45204 * 116.99960 * 179.97438 * 19 17 2 21 21 C 1.52994 * 109.46728 * 60.00078 * 20 19 17 22 22 C 1.53006 * 109.46956 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47164 * 300.00109 * 20 19 17 24 24 H 1.08998 * 109.47398 * 300.00681 * 1 2 3 25 25 H 1.09007 * 109.46582 * 60.00083 * 1 2 3 26 26 H 1.08994 * 109.47522 * 179.97438 * 1 2 3 27 27 H 1.00905 * 110.99493 * 321.05101 * 4 2 1 28 28 H 1.09002 * 109.47050 * 53.89718 * 5 4 2 29 29 H 1.08999 * 109.47241 * 293.89202 * 5 4 2 30 30 H 0.96996 * 120.00361 * 185.01929 * 10 9 7 31 31 H 1.08994 * 117.49828 * 214.97853 * 15 6 5 32 32 H 1.09000 * 117.49399 * 359.97438 * 15 6 5 33 33 H 1.08997 * 117.50136 * 107.50605 * 16 15 6 34 34 H 1.09004 * 117.50126 * 252.52614 * 16 15 6 35 35 H 1.08995 * 109.47466 * 60.00462 * 21 20 19 36 36 H 1.09010 * 109.46578 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.47590 * 299.99429 * 21 20 19 38 38 H 1.09001 * 109.46922 * 59.99905 * 22 20 19 39 39 H 1.09000 * 109.46620 * 180.02562 * 22 20 19 40 40 H 1.08998 * 109.46527 * 299.99694 * 22 20 19 41 41 H 1.09001 * 109.47149 * 59.99705 * 23 20 19 42 42 H 1.08994 * 109.46947 * 179.97438 * 23 20 19 43 43 H 1.09001 * 109.47273 * 300.00437 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0826 0.2224 -2.3468 6 6 2.7371 -0.4901 -3.5320 7 6 2.3481 -1.9342 -3.7182 8 1 2.9855 -2.7185 -3.3377 9 6 1.1784 -2.2539 -4.3743 10 7 0.3200 -1.3078 -4.6869 11 14 0.8127 -4.0309 -4.8193 12 1 1.9289 -4.8959 -4.3599 13 1 -0.4472 -4.4573 -4.1592 14 1 0.6657 -4.1522 -6.2920 15 6 3.0090 0.3361 -4.7907 16 6 4.1707 -0.0920 -3.8920 17 6 2.0323 -0.7103 1.2306 18 8 2.7269 -1.6927 1.1198 19 8 1.7079 -0.2516 2.4497 20 6 2.2266 -0.9860 3.5898 21 6 3.7558 -0.9856 3.5438 22 6 1.7545 -0.3193 4.8835 23 6 1.7153 -2.4274 3.5435 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.4496 -1.4980 -1.4099 28 1 2.6717 1.0998 -2.0800 29 1 1.0739 0.5315 -2.6208 30 1 -0.5347 -1.5397 -5.0825 31 1 2.9064 -0.1647 -5.7533 32 1 2.7211 1.3873 -4.7745 33 1 4.8325 -0.8745 -4.2633 34 1 4.6469 0.6773 -3.2842 35 1 4.1201 0.0411 3.5769 36 1 4.1452 -1.5366 4.4000 37 1 4.0918 -1.4609 2.6223 38 1 0.6650 -0.3200 4.9160 39 1 2.1442 -0.8704 5.7394 40 1 2.1185 0.7076 4.9167 41 1 2.0512 -2.9026 2.6218 42 1 2.1050 -2.9788 4.3991 43 1 0.6258 -2.4277 3.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707228165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:08 Heat of formation + Delta-G solvation = -67.422055 kcal Electronic energy + Delta-G solvation = -21700.647729 eV Core-core repulsion = 18553.708931 eV Total energy + Delta-G solvation = -3146.938798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53569 -37.44346 -36.51604 -34.84536 -33.84487 -31.90956 -29.66541 -27.45007 -27.38514 -25.59537 -24.94647 -23.67461 -21.05231 -20.91191 -19.38892 -18.93492 -16.93728 -16.37947 -15.77713 -15.66813 -14.69804 -14.57277 -14.42498 -14.04290 -13.86047 -13.60960 -13.45441 -12.60057 -12.52153 -12.46156 -12.12607 -11.93105 -11.87355 -11.84939 -11.54651 -11.49121 -11.25184 -11.13599 -10.97513 -10.89290 -10.79955 -10.41327 -10.22232 -10.10408 -9.60387 -9.35886 -8.75410 -8.44680 -8.07124 -7.41786 -6.00981 -4.03652 2.67985 2.87032 3.29700 3.39036 3.45304 4.43426 4.71175 4.74204 4.85244 4.92730 4.99726 5.28272 5.35138 5.39689 5.40797 5.48823 5.48992 5.63555 5.69050 5.82648 5.83603 5.92115 5.96261 6.04351 6.16816 6.27344 6.32422 6.36861 6.42180 6.57172 6.75224 6.79951 6.83803 6.95738 7.14270 7.40752 7.51779 7.92951 7.97619 8.25941 8.37796 8.55827 8.99885 9.60213 11.07121 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.004976 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.642641 B = 5625.109191 C = 6051.869539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.103 0.897 4 N -0.653 5.653 5 C 0.110 3.890 6 C 0.052 3.948 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.069 3.931 10 N -0.883 5.883 11 Si 0.885 3.115 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.285 1.285 15 C -0.166 4.166 16 C -0.206 4.206 17 C 0.464 3.536 18 O -0.478 6.478 19 O -0.359 6.359 20 C 0.116 3.884 21 C -0.183 4.183 22 C -0.139 4.139 23 C -0.183 4.183 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.363 0.637 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.258 0.742 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 3.726 15.392 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.019 4.019 3 H 0.121 0.879 4 N -0.287 5.287 5 C -0.018 4.018 6 C 0.052 3.948 7 C -0.518 4.518 8 H 0.081 0.919 9 C -0.134 4.134 10 N -0.521 5.521 11 Si 0.713 3.287 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.204 4.204 16 C -0.243 4.243 17 C 0.305 3.695 18 O -0.363 6.363 19 O -0.277 6.277 20 C 0.080 3.920 21 C -0.240 4.240 22 C -0.196 4.196 23 C -0.240 4.240 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.185 0.815 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.975 3.504 15.398 15.822 hybrid contribution -1.180 -0.896 -0.460 1.551 sum -0.205 2.608 14.938 15.165 Atomic orbital electron populations 1.22422 0.94938 1.02995 1.03098 1.21087 0.94071 0.98064 0.88720 0.87889 1.60059 1.57173 1.09815 1.01683 1.21421 0.98599 0.92343 0.89467 1.18763 0.90919 0.94711 0.90452 1.20462 1.06497 0.89839 1.35031 0.91886 1.24980 0.96453 0.96728 0.95219 1.69994 1.07419 1.31669 1.42975 0.86639 0.78182 0.85683 0.78182 1.19621 1.21228 1.21127 1.22569 1.02913 0.97953 0.96983 1.22984 0.93263 1.02488 1.05583 1.23915 0.77884 0.83515 0.84159 1.90553 1.33982 1.25097 1.86656 1.86550 1.70242 1.56005 1.14918 1.22067 0.93966 0.91676 0.84303 1.22482 0.94196 1.02714 1.04585 1.21831 1.02188 1.01251 0.94325 1.22483 1.01450 0.95491 1.04568 0.91727 0.90815 0.92102 0.81481 0.94338 0.94582 0.93244 0.90337 0.92112 0.90701 0.91835 0.92216 0.91512 0.89441 0.91656 0.90732 0.91660 0.89520 0.91485 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.10 37.16 0.34 -2.29 16 2 C 0.09 1.57 3.10 -68.86 -0.21 1.35 16 3 H 0.10 1.59 7.70 -51.93 -0.40 1.19 16 4 N -0.65 -13.53 5.48 -107.95 -0.59 -14.12 16 5 C 0.11 2.40 5.63 -3.83 -0.02 2.38 16 6 C 0.05 1.27 1.71 -155.62 -0.27 1.01 16 7 C -0.48 -12.81 7.48 -34.44 -0.26 -13.06 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 10 N -0.88 -24.11 13.11 55.43 0.73 -23.38 16 11 Si 0.89 20.99 29.55 -169.99 -5.02 15.97 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.17 -3.88 9.67 -26.73 -0.26 -4.14 16 16 C -0.21 -4.61 9.88 -26.70 -0.26 -4.87 16 17 C 0.46 7.87 6.64 36.01 0.24 8.11 16 18 O -0.48 -9.30 11.93 -18.75 -0.22 -9.53 16 19 O -0.36 -5.26 9.79 -39.27 -0.38 -5.64 16 20 C 0.12 1.43 1.13 -90.62 -0.10 1.33 16 21 C -0.18 -2.24 8.37 37.15 0.31 -1.93 16 22 C -0.14 -1.28 8.85 37.16 0.33 -0.95 16 23 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 24 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 25 H 0.07 1.15 7.58 -51.92 -0.39 0.75 16 26 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 27 H 0.36 8.22 7.49 -39.29 -0.29 7.93 16 28 H 0.04 0.77 7.71 -51.93 -0.40 0.37 16 29 H 0.04 0.83 7.59 -51.93 -0.39 0.43 16 30 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 31 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 37 H 0.09 1.32 5.89 -51.93 -0.31 1.02 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.31 5.89 -51.93 -0.31 1.00 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -28.35 348.23 -7.73 -36.08 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.53 Total: 8.64 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 0.05 Total: -13.27 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.13 Total: -37.50 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.61 Total: -15.17 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.35 -7.73 -36.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707228165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.339 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds