Wall clock time and date at job start Mon Mar 30 2020 00:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 N 1.46903 * 109.47473 * 239.99472 * 2 1 3 5 5 C 1.46896 * 110.99855 * 85.00183 * 4 2 1 6 6 C 1.52996 * 109.47075 * 173.89562 * 5 4 2 7 7 C 1.50709 * 115.56268 * 39.61304 * 6 5 4 8 8 H 1.07995 * 119.99955 * 262.49501 * 7 6 5 9 9 C 1.37874 * 119.99627 * 82.49473 * 7 6 5 10 10 N 1.31513 * 120.00272 * 351.33870 * 9 7 6 11 11 Si 1.86802 * 119.99784 * 171.34102 * 9 7 6 12 12 H 1.48502 * 109.47084 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47065 * 119.99745 * 11 9 7 14 14 H 1.48498 * 109.47344 * 240.00056 * 11 9 7 15 15 C 1.53001 * 117.50261 * 185.30562 * 6 5 4 16 16 C 1.52993 * 60.03323 * 107.47712 * 15 6 5 17 17 C 1.50702 * 109.46922 * 119.99485 * 2 1 3 18 18 O 1.20822 * 120.00113 * 120.00096 * 17 2 1 19 19 O 1.34233 * 119.99919 * 300.00089 * 17 2 1 20 20 C 1.45204 * 116.99960 * 179.97438 * 19 17 2 21 21 C 1.52994 * 109.46728 * 60.00078 * 20 19 17 22 22 C 1.53006 * 109.46956 * 180.02562 * 20 19 17 23 23 C 1.53002 * 109.47164 * 300.00109 * 20 19 17 24 24 H 1.08998 * 109.47398 * 300.00681 * 1 2 3 25 25 H 1.09007 * 109.46582 * 60.00083 * 1 2 3 26 26 H 1.08994 * 109.47522 * 179.97438 * 1 2 3 27 27 H 1.00905 * 110.99493 * 321.05101 * 4 2 1 28 28 H 1.09002 * 109.47050 * 53.89718 * 5 4 2 29 29 H 1.08999 * 109.47241 * 293.89202 * 5 4 2 30 30 H 0.96996 * 120.00361 * 185.01929 * 10 9 7 31 31 H 1.08994 * 117.49828 * 214.97853 * 15 6 5 32 32 H 1.09000 * 117.49399 * 359.97438 * 15 6 5 33 33 H 1.08997 * 117.50136 * 107.50605 * 16 15 6 34 34 H 1.09004 * 117.50126 * 252.52614 * 16 15 6 35 35 H 1.08995 * 109.47466 * 60.00462 * 21 20 19 36 36 H 1.09010 * 109.46578 * 179.97438 * 21 20 19 37 37 H 1.08998 * 109.47590 * 299.99429 * 21 20 19 38 38 H 1.09001 * 109.46922 * 59.99905 * 22 20 19 39 39 H 1.09000 * 109.46620 * 180.02562 * 22 20 19 40 40 H 1.08998 * 109.46527 * 299.99694 * 22 20 19 41 41 H 1.09001 * 109.47149 * 59.99705 * 23 20 19 42 42 H 1.08994 * 109.46947 * 179.97438 * 23 20 19 43 43 H 1.09001 * 109.47273 * 300.00437 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0826 0.2224 -2.3468 6 6 2.7371 -0.4901 -3.5320 7 6 2.3481 -1.9342 -3.7182 8 1 2.9855 -2.7185 -3.3377 9 6 1.1784 -2.2539 -4.3743 10 7 0.3200 -1.3078 -4.6869 11 14 0.8127 -4.0309 -4.8193 12 1 1.9289 -4.8959 -4.3599 13 1 -0.4472 -4.4573 -4.1592 14 1 0.6657 -4.1522 -6.2920 15 6 3.0090 0.3361 -4.7907 16 6 4.1707 -0.0920 -3.8920 17 6 2.0323 -0.7103 1.2306 18 8 2.7269 -1.6927 1.1198 19 8 1.7079 -0.2516 2.4497 20 6 2.2266 -0.9860 3.5898 21 6 3.7558 -0.9856 3.5438 22 6 1.7545 -0.3193 4.8835 23 6 1.7153 -2.4274 3.5435 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.4496 -1.4980 -1.4099 28 1 2.6717 1.0998 -2.0800 29 1 1.0739 0.5315 -2.6208 30 1 -0.5347 -1.5397 -5.0825 31 1 2.9064 -0.1647 -5.7533 32 1 2.7211 1.3873 -4.7745 33 1 4.8325 -0.8745 -4.2633 34 1 4.6469 0.6773 -3.2842 35 1 4.1201 0.0411 3.5769 36 1 4.1452 -1.5366 4.4000 37 1 4.0918 -1.4609 2.6223 38 1 0.6650 -0.3200 4.9160 39 1 2.1442 -0.8704 5.7394 40 1 2.1185 0.7076 4.9167 41 1 2.0512 -2.9026 2.6218 42 1 2.1050 -2.9788 4.3991 43 1 0.6258 -2.4277 3.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707228165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:08 Heat of formation + Delta-G solvation = -82.787983 kcal Electronic energy + Delta-G solvation = -21701.314046 eV Core-core repulsion = 18553.708931 eV Total energy + Delta-G solvation = -3147.605115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76713 -39.00106 -37.96160 -36.36540 -34.91599 -33.95541 -31.14023 -28.35195 -28.25346 -27.55097 -26.45805 -25.15164 -22.85053 -22.16429 -21.08456 -20.31759 -18.38053 -17.63948 -17.46252 -16.91913 -16.56271 -16.07914 -15.78066 -15.58670 -15.19223 -14.97889 -14.56599 -14.34012 -13.76977 -13.42974 -13.31419 -13.22374 -13.07996 -13.03005 -12.88664 -12.87192 -12.80654 -12.73468 -12.58674 -12.30481 -12.28363 -11.98667 -11.95497 -11.35602 -11.30980 -10.78486 -10.72018 -10.40177 -9.92496 -9.05077 -8.05989 -6.12718 1.36927 1.38728 1.43852 1.53870 1.69405 2.45348 3.20511 3.38837 3.68525 3.73123 3.81812 3.83716 4.00136 4.05607 4.12342 4.39150 4.57867 4.61814 4.62194 4.70761 4.75771 4.77467 4.78249 4.84828 4.91197 4.92942 4.95538 5.04289 5.12077 5.15080 5.20264 5.29569 5.30201 5.36124 5.60185 5.64057 5.66755 5.83385 6.33028 6.52576 6.61711 6.91929 7.04338 7.52668 9.01288 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022170 B = 0.004976 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.642641 B = 5625.109191 C = 6051.869539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.090 3.910 3 H 0.121 0.879 4 N -0.665 5.665 5 C 0.124 3.876 6 C 0.024 3.976 7 C -0.489 4.489 8 H 0.042 0.958 9 C 0.034 3.966 10 N -0.902 5.902 11 Si 0.937 3.063 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.284 1.284 15 C -0.165 4.165 16 C -0.191 4.191 17 C 0.469 3.531 18 O -0.509 6.509 19 O -0.355 6.355 20 C 0.104 3.896 21 C -0.180 4.180 22 C -0.133 4.133 23 C -0.180 4.180 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.347 0.653 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.259 0.741 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 4.523 17.318 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 H 0.139 0.861 4 N -0.297 5.297 5 C -0.005 4.005 6 C 0.023 3.977 7 C -0.527 4.527 8 H 0.060 0.940 9 C -0.166 4.166 10 N -0.541 5.541 11 Si 0.764 3.236 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.210 1.210 15 C -0.203 4.203 16 C -0.228 4.228 17 C 0.311 3.689 18 O -0.396 6.396 19 O -0.273 6.273 20 C 0.069 3.931 21 C -0.237 4.237 22 C -0.190 4.190 23 C -0.238 4.238 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.168 0.832 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.817 4.320 17.343 17.891 hybrid contribution -1.085 -1.153 -0.986 1.865 sum -0.269 3.167 16.357 16.663 Atomic orbital electron populations 1.22304 0.93429 1.02576 1.04032 1.21189 0.95261 0.98422 0.87299 0.86102 1.59982 1.57624 1.09587 1.02546 1.21217 0.97637 0.92652 0.89005 1.18972 0.92723 0.94088 0.91931 1.20513 1.06340 0.90815 1.35041 0.93986 1.25460 0.96361 0.99575 0.95215 1.70059 1.07603 1.32869 1.43529 0.85840 0.77843 0.82193 0.77756 1.20115 1.20644 1.20984 1.22481 1.03681 0.98447 0.95699 1.22987 0.92409 1.02568 1.04829 1.23839 0.77235 0.82904 0.84930 1.90564 1.35395 1.26408 1.87226 1.86530 1.69998 1.56079 1.14693 1.22476 0.94112 0.91920 0.84623 1.22447 0.94299 1.03045 1.03904 1.21850 1.02607 1.01609 0.92890 1.22453 1.01750 0.95660 1.03891 0.89051 0.91470 0.93199 0.83233 0.92415 0.96198 0.93220 0.92519 0.90467 0.91299 0.89419 0.91651 0.89095 0.92781 0.91152 0.88317 0.91061 0.92846 0.89071 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.10 71.98 0.65 -4.12 16 2 C 0.09 2.96 3.10 44.17 0.14 3.10 16 3 H 0.12 3.52 7.70 -2.39 -0.02 3.50 16 4 N -0.67 -27.66 5.48 -495.45 -2.72 -30.38 16 5 C 0.12 5.32 5.63 86.30 0.49 5.81 16 6 C 0.02 1.14 1.71 -52.90 -0.09 1.05 16 7 C -0.49 -26.52 7.48 25.60 0.19 -26.33 16 8 H 0.04 2.40 7.83 -2.91 -0.02 2.38 16 9 C 0.03 1.84 5.39 84.65 0.46 2.30 16 10 N -0.90 -49.62 13.11 21.45 0.28 -49.34 16 11 Si 0.94 43.63 29.55 68.60 2.03 45.66 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 15 C -0.16 -7.65 9.67 30.59 0.30 -7.35 16 16 C -0.19 -8.36 9.88 30.62 0.30 -8.06 16 17 C 0.47 15.67 6.64 71.24 0.47 16.14 16 18 O -0.51 -20.15 11.93 21.98 0.26 -19.88 16 19 O -0.36 -9.86 9.79 -51.44 -0.50 -10.37 16 20 C 0.10 2.38 1.13 -10.79 -0.01 2.36 16 21 C -0.18 -4.14 8.37 71.98 0.60 -3.54 16 22 C -0.13 -1.99 8.85 71.98 0.64 -1.35 16 23 C -0.18 -4.20 8.37 71.98 0.60 -3.60 16 24 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 25 H 0.07 2.04 7.58 -2.38 -0.02 2.02 16 26 H 0.05 1.54 8.13 -2.39 -0.02 1.52 16 27 H 0.35 16.16 7.49 -89.69 -0.67 15.48 16 28 H 0.06 2.23 7.71 -2.39 -0.02 2.21 16 29 H 0.02 0.91 7.59 -2.39 -0.02 0.89 16 30 H 0.26 13.67 8.32 -92.71 -0.77 12.90 16 31 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.05 1.63 5.89 -2.39 -0.01 1.62 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.05 1.63 5.89 -2.39 -0.01 1.61 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -61.25 348.23 4.39 -56.86 By element: Atomic # 1 Polarization: 30.71 SS G_CDS: 0.30 Total: 31.02 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 4.74 Total: -23.58 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.43 Total: -79.71 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.24 Total: -30.25 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -61.25 4.39 -56.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707228165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -61.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds