Wall clock time and date at job start Mon Mar 30 2020 00:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46684 * 2 1 4 4 N 1.46904 * 109.46761 * 120.00019 * 2 1 3 5 5 C 1.46904 * 110.99787 * 274.99914 * 4 2 1 6 6 C 1.52999 * 109.46646 * 185.19547 * 5 4 2 7 7 C 1.50699 * 115.55445 * 297.13794 * 6 5 4 8 8 H 1.08000 * 119.99679 * 95.21041 * 7 6 5 9 9 C 1.37883 * 120.00138 * 275.22254 * 7 6 5 10 10 N 1.31514 * 119.99876 * 7.09318 * 9 7 6 11 11 Si 1.86794 * 120.00059 * 187.09580 * 9 7 6 12 12 H 1.48496 * 109.47468 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.47052 * 299.99863 * 11 9 7 14 14 H 1.48507 * 109.47223 * 59.99305 * 11 9 7 15 15 C 1.53003 * 117.49863 * 82.81338 * 6 5 4 16 16 C 1.53001 * 117.49730 * 151.47248 * 6 5 4 17 17 C 1.50695 * 109.46922 * 239.99953 * 2 1 3 18 18 O 1.20829 * 119.99771 * 239.99870 * 17 2 1 19 19 O 1.34234 * 120.00050 * 60.00378 * 17 2 1 20 20 C 1.45202 * 116.99827 * 179.97438 * 19 17 2 21 21 C 1.53001 * 109.47249 * 59.99879 * 20 19 17 22 22 C 1.52994 * 109.46903 * 179.97438 * 20 19 17 23 23 C 1.53003 * 109.46881 * 299.99969 * 20 19 17 24 24 H 1.08995 * 109.47341 * 59.99922 * 1 2 3 25 25 H 1.09000 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47270 * 299.99925 * 1 2 3 27 27 H 1.00891 * 111.00013 * 38.95694 * 4 2 1 28 28 H 1.09000 * 109.47248 * 65.19800 * 5 4 2 29 29 H 1.09000 * 109.47262 * 305.19227 * 5 4 2 30 30 H 0.97006 * 119.99734 * 355.40076 * 10 9 7 31 31 H 1.09006 * 117.49442 * 214.99775 * 15 6 5 32 32 H 1.08996 * 117.49999 * 0.02562 * 15 6 5 33 33 H 1.09005 * 117.50024 * 359.97296 * 16 6 5 34 34 H 1.09000 * 117.50409 * 144.97210 * 16 6 5 35 35 H 1.08997 * 109.47149 * 59.99580 * 21 20 19 36 36 H 1.08995 * 109.47052 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.46897 * 300.00060 * 21 20 19 38 38 H 1.09004 * 109.47254 * 60.00053 * 22 20 19 39 39 H 1.08995 * 109.47094 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47369 * 299.99751 * 22 20 19 41 41 H 1.08993 * 109.47555 * 60.00205 * 23 20 19 42 42 H 1.09004 * 109.46762 * 180.02562 * 23 20 19 43 43 H 1.09004 * 109.47072 * 299.99822 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.7162 -0.4971 3.5391 7 6 1.9537 -1.6883 4.0596 8 1 2.2082 -2.6819 3.7216 9 6 0.9311 -1.5094 4.9670 10 7 0.5280 -0.2955 5.2726 11 14 0.1184 -2.9914 5.7623 12 1 -0.9439 -2.5332 6.6933 13 1 -0.4817 -3.8508 4.7103 14 1 1.1351 -3.7685 6.5159 15 6 4.2439 -0.5553 3.5984 16 6 3.4745 0.3562 4.5577 17 6 2.0323 -0.7104 -1.2304 18 8 2.7270 -1.6928 -1.1195 19 8 1.7081 -0.2518 -2.4496 20 6 2.2277 -0.9857 -3.5896 21 6 1.7175 -2.4274 -3.5437 22 6 1.7556 -0.3192 -4.8834 23 6 3.7570 -0.9842 -3.5431 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.4496 -1.4979 1.4100 28 1 1.0749 0.5445 2.6105 29 1 2.6850 1.0924 2.0855 30 1 0.9932 0.4753 4.9114 31 1 4.6975 -1.4553 4.0139 32 1 4.7975 -0.0805 2.7884 33 1 3.5223 1.4303 4.3784 34 1 3.4217 0.0564 5.6043 35 1 0.6281 -2.4285 -3.5767 36 1 2.1072 -2.9782 -4.3997 37 1 2.0535 -2.9024 -2.6219 38 1 2.1188 0.7080 -4.9164 39 1 2.1460 -0.8699 -5.7391 40 1 0.6662 -0.3207 -4.9163 41 1 4.0930 -1.4592 -2.6215 42 1 4.1471 -1.5348 -4.3992 43 1 4.1205 0.0430 -3.5759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707228170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:10 Heat of formation + Delta-G solvation = -73.685168 kcal Electronic energy + Delta-G solvation = -21628.516282 eV Core-core repulsion = 18481.305895 eV Total energy + Delta-G solvation = -3147.210387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64767 -37.65986 -36.71657 -35.03720 -33.94407 -31.84070 -29.81608 -27.51565 -27.45829 -25.46141 -24.77333 -23.84806 -21.25748 -20.98262 -19.60000 -19.14332 -17.12315 -16.52210 -16.20954 -15.81187 -14.85040 -14.59985 -14.20549 -14.10432 -13.77048 -13.71503 -13.55975 -12.67955 -12.58918 -12.54707 -12.21034 -12.16319 -11.97280 -11.95682 -11.92225 -11.56479 -11.48725 -11.23156 -11.01355 -10.83781 -10.67929 -10.33320 -10.31189 -10.10820 -9.69801 -9.44074 -8.49693 -8.35598 -8.27796 -7.71161 -6.33076 -4.06316 2.55476 2.75471 3.43517 3.45936 3.63901 4.51512 4.63699 4.66858 4.67200 4.81403 4.86204 5.19730 5.26223 5.34039 5.34697 5.37512 5.42524 5.57202 5.62178 5.73659 5.76246 5.82488 5.87174 5.90784 5.97003 6.19161 6.21716 6.25901 6.28284 6.36608 6.54184 6.61995 6.71243 6.73412 6.96289 7.25961 7.35352 7.71772 8.03702 8.20705 8.33507 8.47549 8.91380 9.68278 11.05801 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.004548 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.473575 B = 6154.617929 C = 6493.286902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 H 0.105 0.895 4 N -0.657 5.657 5 C 0.104 3.896 6 C 0.028 3.972 7 C -0.568 4.568 8 H 0.053 0.947 9 C 0.026 3.974 10 N -0.907 5.907 11 Si 1.064 2.936 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.288 1.288 15 C -0.183 4.183 16 C -0.184 4.184 17 C 0.466 3.534 18 O -0.480 6.480 19 O -0.358 6.358 20 C 0.116 3.884 21 C -0.183 4.183 22 C -0.139 4.139 23 C -0.183 4.183 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.359 0.641 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.274 0.726 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 1.578 -17.003 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.019 4.019 3 H 0.123 0.877 4 N -0.290 5.290 5 C -0.025 4.025 6 C 0.027 3.973 7 C -0.606 4.606 8 H 0.071 0.929 9 C -0.179 4.179 10 N -0.542 5.542 11 Si 0.893 3.107 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.215 1.215 15 C -0.220 4.220 16 C -0.222 4.222 17 C 0.306 3.694 18 O -0.364 6.364 19 O -0.276 6.276 20 C 0.080 3.920 21 C -0.240 4.240 22 C -0.196 4.196 23 C -0.240 4.240 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.180 0.820 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.407 0.885 -16.125 16.154 hybrid contribution 0.479 0.501 -0.899 1.135 sum 0.885 1.386 -17.024 17.103 Atomic orbital electron populations 1.22428 0.94667 1.03131 1.03341 1.21087 0.94273 0.98120 0.88401 0.87716 1.60018 1.57144 1.09930 1.01917 1.21589 0.98593 0.92778 0.89503 1.18992 0.89388 0.96611 0.92322 1.21295 1.19772 0.91839 1.27733 0.92854 1.25744 0.95183 1.02103 0.94903 1.70749 1.39265 0.98587 1.45642 0.83605 0.76180 0.74451 0.76457 1.20959 1.21510 1.21492 1.22751 0.97211 1.00844 1.01235 1.22792 1.07854 0.94805 0.96786 1.23827 0.77858 0.83456 0.84210 1.90556 1.34034 1.25132 1.86711 1.86548 1.70143 1.56019 1.14873 1.22087 0.93967 0.91703 0.84241 1.22484 1.01504 0.95436 1.04568 1.21832 1.02238 1.01286 0.94267 1.22485 0.94173 1.02753 1.04589 0.91427 0.91944 0.90813 0.81965 0.94932 0.93978 0.91477 0.90533 0.91480 0.91805 0.89995 0.92156 0.91396 0.89574 0.91627 0.90652 0.91605 0.89517 0.91411 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 9.10 37.16 0.34 -2.21 16 2 C 0.09 1.52 3.10 -68.86 -0.21 1.30 16 3 H 0.11 1.58 7.72 -51.93 -0.40 1.18 16 4 N -0.66 -13.11 5.70 -107.95 -0.62 -13.73 16 5 C 0.10 2.23 5.29 -3.82 -0.02 2.21 16 6 C 0.03 0.67 1.14 -155.66 -0.18 0.49 16 7 C -0.57 -15.35 8.24 -34.44 -0.28 -15.63 16 8 H 0.05 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.71 5.39 -17.82 -0.10 0.62 16 10 N -0.91 -26.00 13.57 55.43 0.75 -25.24 16 11 Si 1.06 24.63 29.91 -169.99 -5.08 19.55 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 C -0.18 -4.15 9.96 -26.69 -0.27 -4.41 16 16 C -0.18 -4.27 8.73 -26.69 -0.23 -4.50 16 17 C 0.47 7.60 6.63 36.00 0.24 7.83 16 18 O -0.48 -8.98 11.93 -18.75 -0.22 -9.20 16 19 O -0.36 -5.06 9.79 -39.27 -0.38 -5.44 16 20 C 0.12 1.38 1.13 -90.62 -0.10 1.28 16 21 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 22 C -0.14 -1.22 8.85 37.15 0.33 -0.89 16 23 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 24 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 25 H 0.06 0.92 8.13 -51.93 -0.42 0.49 16 26 H 0.07 1.12 7.55 -51.93 -0.39 0.72 16 27 H 0.36 7.72 7.96 -39.30 -0.31 7.40 16 28 H 0.03 0.74 7.26 -51.93 -0.38 0.36 16 29 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 30 H 0.27 7.77 6.20 -40.82 -0.25 7.52 16 31 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.25 5.89 -51.93 -0.31 0.94 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.27 5.89 -51.93 -0.31 0.96 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -29.43 346.50 -7.65 -37.09 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -7.46 Total: 9.34 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 0.14 Total: -17.59 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.14 Total: -38.97 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.61 Total: -14.64 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.55 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.43 -7.65 -37.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707228170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.597 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds