Wall clock time and date at job start Mon Mar 30 2020 00:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46684 * 2 1 4 4 N 1.46904 * 109.46761 * 120.00019 * 2 1 3 5 5 C 1.46904 * 110.99787 * 274.99914 * 4 2 1 6 6 C 1.52999 * 109.46646 * 185.19547 * 5 4 2 7 7 C 1.50699 * 115.55445 * 297.13794 * 6 5 4 8 8 H 1.08000 * 119.99679 * 95.21041 * 7 6 5 9 9 C 1.37883 * 120.00138 * 275.22254 * 7 6 5 10 10 N 1.31514 * 119.99876 * 7.09318 * 9 7 6 11 11 Si 1.86794 * 120.00059 * 187.09580 * 9 7 6 12 12 H 1.48496 * 109.47468 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.47052 * 299.99863 * 11 9 7 14 14 H 1.48507 * 109.47223 * 59.99305 * 11 9 7 15 15 C 1.53003 * 117.49863 * 82.81338 * 6 5 4 16 16 C 1.53001 * 117.49730 * 151.47248 * 6 5 4 17 17 C 1.50695 * 109.46922 * 239.99953 * 2 1 3 18 18 O 1.20829 * 119.99771 * 239.99870 * 17 2 1 19 19 O 1.34234 * 120.00050 * 60.00378 * 17 2 1 20 20 C 1.45202 * 116.99827 * 179.97438 * 19 17 2 21 21 C 1.53001 * 109.47249 * 59.99879 * 20 19 17 22 22 C 1.52994 * 109.46903 * 179.97438 * 20 19 17 23 23 C 1.53003 * 109.46881 * 299.99969 * 20 19 17 24 24 H 1.08995 * 109.47341 * 59.99922 * 1 2 3 25 25 H 1.09000 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47270 * 299.99925 * 1 2 3 27 27 H 1.00891 * 111.00013 * 38.95694 * 4 2 1 28 28 H 1.09000 * 109.47248 * 65.19800 * 5 4 2 29 29 H 1.09000 * 109.47262 * 305.19227 * 5 4 2 30 30 H 0.97006 * 119.99734 * 355.40076 * 10 9 7 31 31 H 1.09006 * 117.49442 * 214.99775 * 15 6 5 32 32 H 1.08996 * 117.49999 * 0.02562 * 15 6 5 33 33 H 1.09005 * 117.50024 * 359.97296 * 16 6 5 34 34 H 1.09000 * 117.50409 * 144.97210 * 16 6 5 35 35 H 1.08997 * 109.47149 * 59.99580 * 21 20 19 36 36 H 1.08995 * 109.47052 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.46897 * 300.00060 * 21 20 19 38 38 H 1.09004 * 109.47254 * 60.00053 * 22 20 19 39 39 H 1.08995 * 109.47094 * 179.97438 * 22 20 19 40 40 H 1.08997 * 109.47369 * 299.99751 * 22 20 19 41 41 H 1.08993 * 109.47555 * 60.00205 * 23 20 19 42 42 H 1.09004 * 109.46762 * 180.02562 * 23 20 19 43 43 H 1.09004 * 109.47072 * 299.99822 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.7162 -0.4971 3.5391 7 6 1.9537 -1.6883 4.0596 8 1 2.2082 -2.6819 3.7216 9 6 0.9311 -1.5094 4.9670 10 7 0.5280 -0.2955 5.2726 11 14 0.1184 -2.9914 5.7623 12 1 -0.9439 -2.5332 6.6933 13 1 -0.4817 -3.8508 4.7103 14 1 1.1351 -3.7685 6.5159 15 6 4.2439 -0.5553 3.5984 16 6 3.4745 0.3562 4.5577 17 6 2.0323 -0.7104 -1.2304 18 8 2.7270 -1.6928 -1.1195 19 8 1.7081 -0.2518 -2.4496 20 6 2.2277 -0.9857 -3.5896 21 6 1.7175 -2.4274 -3.5437 22 6 1.7556 -0.3192 -4.8834 23 6 3.7570 -0.9842 -3.5431 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.4496 -1.4979 1.4100 28 1 1.0749 0.5445 2.6105 29 1 2.6850 1.0924 2.0855 30 1 0.9932 0.4753 4.9114 31 1 4.6975 -1.4553 4.0139 32 1 4.7975 -0.0805 2.7884 33 1 3.5223 1.4303 4.3784 34 1 3.4217 0.0564 5.6043 35 1 0.6281 -2.4285 -3.5767 36 1 2.1072 -2.9782 -4.3997 37 1 2.0535 -2.9024 -2.6219 38 1 2.1188 0.7080 -4.9164 39 1 2.1460 -0.8699 -5.7391 40 1 0.6662 -0.3207 -4.9163 41 1 4.0930 -1.4592 -2.6215 42 1 4.1471 -1.5348 -4.3992 43 1 4.1205 0.0430 -3.5759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707228170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:10 Heat of formation + Delta-G solvation = -90.133030 kcal Electronic energy + Delta-G solvation = -21629.229515 eV Core-core repulsion = 18481.305895 eV Total energy + Delta-G solvation = -3147.923620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83662 -39.26709 -38.09711 -36.52385 -34.97186 -33.91252 -31.25948 -28.38129 -28.28299 -27.20779 -26.51225 -25.30737 -23.01705 -22.24922 -21.40168 -20.41098 -18.69617 -17.95853 -17.55436 -16.99525 -16.20354 -15.97000 -15.92028 -15.59989 -15.25708 -15.06831 -14.60330 -14.36849 -14.18786 -13.76817 -13.43857 -13.31665 -13.11997 -13.10534 -12.90336 -12.83602 -12.73362 -12.63222 -12.51010 -12.34183 -12.18616 -12.03624 -11.94852 -11.40371 -11.35326 -10.84529 -10.45187 -10.37184 -10.20904 -9.29915 -8.48925 -6.22125 1.29088 1.55764 1.61049 1.61486 1.81017 2.59257 3.10915 3.27125 3.56671 3.66265 3.77545 3.80000 3.94508 3.97076 4.02288 4.18551 4.43006 4.51922 4.56842 4.59575 4.60418 4.66626 4.75512 4.78919 4.81948 4.83861 4.88422 4.88772 4.91626 5.08155 5.11137 5.13809 5.26513 5.32419 5.44095 5.49598 5.57570 6.11779 6.23514 6.30293 6.40627 6.79252 6.96194 7.57456 8.90953 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.004548 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.473575 B = 6154.617929 C = 6493.286902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.121 0.879 4 N -0.666 5.666 5 C 0.119 3.881 6 C 0.001 3.999 7 C -0.575 4.575 8 H 0.036 0.964 9 C -0.014 4.014 10 N -0.929 5.929 11 Si 1.105 2.895 12 H -0.285 1.285 13 H -0.275 1.275 14 H -0.280 1.280 15 C -0.171 4.171 16 C -0.180 4.180 17 C 0.471 3.529 18 O -0.508 6.508 19 O -0.355 6.355 20 C 0.105 3.895 21 C -0.180 4.180 22 C -0.133 4.133 23 C -0.180 4.180 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.347 0.653 28 H 0.015 0.985 29 H 0.059 0.941 30 H 0.267 0.733 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 1.989 -19.025 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 H 0.138 0.862 4 N -0.298 5.298 5 C -0.010 4.010 6 C 0.001 3.999 7 C -0.613 4.613 8 H 0.054 0.946 9 C -0.215 4.215 10 N -0.565 5.565 11 Si 0.929 3.071 12 H -0.211 1.211 13 H -0.200 1.200 14 H -0.206 1.206 15 C -0.208 4.208 16 C -0.218 4.218 17 C 0.313 3.687 18 O -0.395 6.395 19 O -0.272 6.272 20 C 0.069 3.931 21 C -0.237 4.237 22 C -0.190 4.190 23 C -0.237 4.237 24 H 0.112 0.888 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.166 0.834 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.269 1.313 -18.179 18.229 hybrid contribution 0.585 0.363 -0.362 0.778 sum 0.854 1.675 -18.541 18.637 Atomic orbital electron populations 1.22322 0.93157 1.02945 1.04126 1.21181 0.95473 0.98396 0.87046 0.86176 1.59957 1.57626 1.09632 1.02550 1.21333 0.97527 0.93058 0.89084 1.19165 0.90267 0.96693 0.93814 1.21463 1.20054 0.92104 1.27699 0.94597 1.26847 0.95853 1.03524 0.95238 1.70843 1.40010 0.98940 1.46738 0.83064 0.75663 0.72290 0.76120 1.21108 1.20045 1.20558 1.22728 0.96314 1.00452 1.01320 1.22715 1.07653 0.95973 0.95434 1.23716 0.77241 0.82857 0.84920 1.90566 1.35365 1.26367 1.87249 1.86530 1.69914 1.56117 1.14664 1.22492 0.94093 0.91996 0.84519 1.22454 1.01819 0.95519 1.03951 1.21853 1.02653 1.01603 0.92908 1.22454 0.94294 1.03035 1.03957 0.88838 0.92632 0.91690 0.83407 0.96695 0.92234 0.92272 0.91356 0.89561 0.89678 0.92208 0.91705 0.89020 0.92757 0.91122 0.88254 0.91107 0.92744 0.89015 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.10 71.98 0.65 -3.98 16 2 C 0.09 2.87 3.10 44.17 0.14 3.00 16 3 H 0.12 3.42 7.72 -2.39 -0.02 3.40 16 4 N -0.67 -26.58 5.70 -495.43 -2.82 -29.40 16 5 C 0.12 5.07 5.29 86.30 0.46 5.53 16 6 C 0.00 0.07 1.14 -52.93 -0.06 0.01 16 7 C -0.58 -31.50 8.24 25.60 0.21 -31.29 16 8 H 0.04 2.04 7.82 -2.91 -0.02 2.02 16 9 C -0.01 -0.78 5.39 84.66 0.46 -0.32 16 10 N -0.93 -53.73 13.57 21.45 0.29 -53.44 16 11 Si 1.10 49.85 29.91 68.60 2.05 51.90 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 15 C -0.17 -7.64 9.96 30.62 0.30 -7.33 16 16 C -0.18 -8.28 8.73 30.62 0.27 -8.01 16 17 C 0.47 15.05 6.63 71.23 0.47 15.53 16 18 O -0.51 -19.21 11.93 21.96 0.26 -18.95 16 19 O -0.35 -9.45 9.79 -51.45 -0.50 -9.96 16 20 C 0.10 2.27 1.13 -10.79 -0.01 2.26 16 21 C -0.18 -3.96 8.37 71.98 0.60 -3.36 16 22 C -0.13 -1.90 8.85 71.98 0.64 -1.26 16 23 C -0.18 -3.97 8.37 71.98 0.60 -3.37 16 24 H 0.09 2.10 8.11 -2.39 -0.02 2.08 16 25 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 26 H 0.06 1.93 7.55 -2.39 -0.02 1.91 16 27 H 0.35 15.20 7.96 -89.70 -0.71 14.49 16 28 H 0.01 0.68 7.26 -2.39 -0.02 0.67 16 29 H 0.06 2.30 7.89 -2.39 -0.02 2.29 16 30 H 0.27 15.34 6.20 -92.70 -0.57 14.77 16 31 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 32 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 34 H 0.06 2.99 8.14 -2.39 -0.02 2.98 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.57 5.89 -2.39 -0.01 1.55 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 1.58 5.89 -2.39 -0.01 1.56 16 42 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -63.64 346.50 4.46 -59.18 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.46 Total: 33.28 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.73 Total: -32.61 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.53 Total: -82.85 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.24 Total: -28.91 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.90 kcal Total: -63.64 4.46 -59.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707228170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.951 kcal (2) G-P(sol) polarization free energy of solvation -63.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds