Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46918 * 2 1 4 4 C 1.46851 * 111.00087 * 52.15986 * 3 2 1 5 5 C 1.53040 * 109.52095 * 185.83905 * 4 3 2 6 6 C 1.53111 * 109.28017 * 300.81569 * 5 4 3 7 7 C 1.53122 * 109.16128 * 57.65770 * 6 5 4 8 8 C 1.46845 * 110.99853 * 176.36546 * 3 2 1 9 9 H 1.09001 * 109.45511 * 294.16849 * 8 3 2 10 10 C 1.50700 * 109.46522 * 54.14471 * 8 3 2 11 11 O 1.20834 * 119.99696 * 33.16981 * 10 8 3 12 12 O 1.34230 * 120.00430 * 213.17398 * 10 8 3 13 13 C 1.45197 * 117.00048 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47103 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47447 * 180.02562 * 14 13 12 16 16 C 1.50691 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99915 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46896 * 269.99670 * 20 18 16 22 22 H 1.48505 * 109.47320 * 29.99271 * 20 18 16 23 23 H 1.48502 * 109.47325 * 149.99641 * 20 18 16 24 24 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47235 * 300.00429 * 1 2 3 26 26 H 1.09004 * 109.46892 * 60.00531 * 1 2 3 27 27 H 1.08998 * 109.47235 * 239.99571 * 2 1 3 28 28 H 1.09004 * 109.46892 * 119.99469 * 2 1 3 29 29 H 1.08997 * 109.46515 * 65.81797 * 4 3 2 30 30 H 1.08998 * 109.44818 * 305.84715 * 4 3 2 31 31 H 1.09001 * 109.50042 * 180.87529 * 5 4 3 32 32 H 1.09002 * 109.50303 * 60.76004 * 5 4 3 33 33 H 1.08999 * 109.52267 * 297.75533 * 6 5 4 34 34 H 1.08998 * 109.57850 * 177.59272 * 6 5 4 35 35 H 1.08996 * 109.50538 * 182.40930 * 7 6 5 36 36 H 1.09000 * 109.50504 * 62.28423 * 7 6 5 37 37 H 1.09006 * 109.47064 * 60.00108 * 13 12 10 38 38 H 1.08996 * 109.47512 * 299.99964 * 13 12 10 39 39 H 1.09006 * 109.46980 * 60.00170 * 14 13 12 40 40 H 1.09004 * 109.47328 * 300.00214 * 14 13 12 41 41 H 1.09006 * 109.47096 * 59.99991 * 15 14 13 42 42 H 1.09004 * 109.46828 * 300.00271 * 15 14 13 43 43 H 0.97000 * 120.00548 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4021 2.1615 1.0827 5 6 1.8218 3.6284 0.9636 6 6 3.3475 3.7261 1.0464 7 6 3.9668 2.8701 -0.0619 8 6 3.4850 1.4251 0.0869 9 1 3.8022 1.0343 1.0538 10 6 4.0766 0.5828 -1.0138 11 8 3.5161 0.5033 -2.0813 12 8 5.2260 -0.0794 -0.8083 13 6 5.7369 -0.8716 -1.9126 14 6 7.0443 -1.5469 -1.4938 15 6 7.5831 -2.3812 -2.6577 16 6 8.8705 -3.0468 -2.2450 17 1 9.2653 -2.8902 -1.2520 18 6 9.5451 -3.8550 -3.1355 19 7 9.0646 -4.0453 -4.3448 20 14 11.1406 -4.6807 -2.6236 21 1 12.2845 -3.7910 -2.9479 22 1 11.1159 -4.9424 -1.1620 23 1 11.2898 -5.9651 -3.3540 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7292 1.7671 2.0447 30 1 0.3171 2.0870 1.0095 31 1 1.3757 4.2016 1.7764 32 1 1.4829 4.0274 0.0075 33 1 3.6835 3.3632 2.0177 34 1 3.6545 4.7643 0.9193 35 1 5.0534 2.9014 0.0183 36 1 3.6617 3.2571 -1.0341 37 1 5.9213 -0.2238 -2.7697 38 1 5.0049 -1.6325 -2.1832 39 1 6.8604 -2.1946 -0.6366 40 1 7.7762 -0.7857 -1.2236 41 1 7.7672 -1.7331 -3.5147 42 1 6.8514 -3.1424 -2.9284 43 1 8.2359 -3.6169 -4.6105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745087672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = -110.256610 kcal Electronic energy + Delta-G solvation = -20938.570496 eV Core-core repulsion = 17789.774252 eV Total energy + Delta-G solvation = -3148.796244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78731 -38.90668 -36.38049 -34.67266 -34.28563 -32.02280 -31.42133 -29.93313 -26.96105 -25.26323 -24.48530 -22.97945 -21.64657 -20.95479 -20.67812 -19.83796 -17.69690 -16.95381 -16.58246 -16.35875 -15.52739 -15.20518 -15.04436 -14.49323 -13.99415 -13.81918 -13.74223 -13.59849 -13.42969 -13.05516 -12.66013 -12.21204 -12.04534 -11.97398 -11.66705 -11.59016 -11.45632 -11.18290 -10.99085 -10.90417 -10.85179 -10.61553 -10.44868 -10.22930 -10.12413 -9.85559 -9.82223 -8.62435 -8.61413 -8.35524 -6.39289 -4.09117 2.25747 2.66979 3.42844 3.46561 3.57730 3.62462 4.42450 4.47957 4.53753 4.58512 4.75854 4.85976 4.91037 4.95855 5.03901 5.19033 5.24164 5.29804 5.36430 5.37671 5.47123 5.51801 5.55044 5.57522 5.64625 5.77132 5.79651 5.84886 5.88874 5.94057 6.04297 6.36589 6.39873 6.65808 6.71076 6.75913 6.84485 7.31462 7.42971 7.92877 8.16102 8.43000 8.84593 9.63320 11.01505 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034145 B = 0.003144 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.844683 B = 8903.078024 C = 9311.147443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 N -0.519 5.519 4 C 0.052 3.948 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.108 4.108 8 C 0.098 3.902 9 H 0.072 0.928 10 C 0.459 3.541 11 O -0.492 6.492 12 O -0.359 6.359 13 C 0.068 3.932 14 C -0.102 4.102 15 C 0.011 3.989 16 C -0.603 4.603 17 H 0.051 0.949 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 1.074 2.926 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.284 1.284 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.010 0.990 42 H 0.010 0.990 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.235 14.595 13.031 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 N -0.246 5.246 4 C -0.075 4.075 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.146 4.146 8 C -0.012 4.012 9 H 0.090 0.910 10 C 0.300 3.700 11 O -0.378 6.378 12 O -0.276 6.276 13 C -0.005 4.005 14 C -0.139 4.139 15 C -0.026 4.026 16 C -0.641 4.641 17 H 0.070 0.930 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.902 3.098 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.209 1.209 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.303 13.734 11.708 23.662 hybrid contribution -1.002 0.533 1.099 1.580 sum -16.305 14.267 12.807 25.168 Atomic orbital electron populations 1.21850 0.94326 1.02047 1.02408 1.22271 0.96592 0.88453 1.01511 1.61784 1.03279 1.13141 1.46435 1.22244 1.00072 0.93678 0.91527 1.21640 0.95815 0.95540 1.02762 1.21570 0.95548 1.00105 0.98352 1.21577 1.00737 0.91325 1.00997 1.21209 0.88738 0.95848 0.95398 0.91034 1.23370 0.79446 0.78231 0.88983 1.90655 1.60362 1.60076 1.26708 1.86503 1.37906 1.57992 1.45171 1.23483 0.97022 0.93056 0.86911 1.21615 0.92232 0.98820 1.01271 1.19180 0.96530 0.94180 0.92730 1.22015 1.08192 1.32313 1.01593 0.93032 1.25900 1.03455 0.95778 0.93819 1.70751 1.22149 1.42976 1.18947 0.83482 0.74709 0.76560 0.75086 1.21393 1.21423 1.20947 0.91990 0.92474 0.91528 0.89764 0.94815 0.94633 0.89441 0.91205 0.90754 0.91788 0.90972 0.90284 0.90083 0.91544 0.91655 0.92022 0.91951 0.97127 0.97158 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.43 37.16 0.35 -0.97 16 2 C 0.04 0.44 5.31 -3.82 -0.02 0.42 16 3 N -0.52 -5.89 4.37 -228.07 -1.00 -6.89 16 4 C 0.05 0.43 5.04 -3.83 -0.02 0.41 16 5 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 6 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 7 C -0.11 -1.10 5.36 -26.64 -0.14 -1.24 16 8 C 0.10 1.18 2.33 -68.87 -0.16 1.02 16 9 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.46 7.29 5.97 36.01 0.21 7.51 16 11 O -0.49 -9.10 15.21 -18.76 -0.29 -9.39 16 12 O -0.36 -6.21 10.22 -39.26 -0.40 -6.61 16 13 C 0.07 1.29 5.47 37.16 0.20 1.50 16 14 C -0.10 -2.16 5.53 -26.73 -0.15 -2.31 16 15 C 0.01 0.28 4.28 -27.89 -0.12 0.16 16 16 C -0.60 -17.36 9.11 -34.44 -0.31 -17.68 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 19 N -0.91 -28.25 13.65 55.43 0.76 -27.49 16 20 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.42 6.19 -51.93 -0.32 0.10 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.18 6.26 -51.93 -0.32 0.86 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.64 5.84 -51.93 -0.30 0.34 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 42 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 43 H 0.27 8.30 7.22 -40.82 -0.29 8.00 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -32.26 341.45 -9.06 -41.32 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -7.62 Total: -3.51 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.58 Total: -12.94 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.24 Total: -34.38 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.69 Total: -16.00 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.26 -9.06 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745087672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.940 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds