Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46918 * 2 1 4 4 C 1.46851 * 111.00087 * 52.15986 * 3 2 1 5 5 C 1.53040 * 109.52095 * 185.83905 * 4 3 2 6 6 C 1.53111 * 109.28017 * 300.81569 * 5 4 3 7 7 C 1.53122 * 109.16128 * 57.65770 * 6 5 4 8 8 C 1.46845 * 110.99853 * 176.36546 * 3 2 1 9 9 H 1.09001 * 109.45511 * 294.16849 * 8 3 2 10 10 C 1.50700 * 109.46522 * 54.14471 * 8 3 2 11 11 O 1.20834 * 119.99696 * 33.16981 * 10 8 3 12 12 O 1.34230 * 120.00430 * 213.17398 * 10 8 3 13 13 C 1.45197 * 117.00048 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47103 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47447 * 180.02562 * 14 13 12 16 16 C 1.50691 * 109.47247 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00464 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99915 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46896 * 269.99670 * 20 18 16 22 22 H 1.48505 * 109.47320 * 29.99271 * 20 18 16 23 23 H 1.48502 * 109.47325 * 149.99641 * 20 18 16 24 24 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47235 * 300.00429 * 1 2 3 26 26 H 1.09004 * 109.46892 * 60.00531 * 1 2 3 27 27 H 1.08998 * 109.47235 * 239.99571 * 2 1 3 28 28 H 1.09004 * 109.46892 * 119.99469 * 2 1 3 29 29 H 1.08997 * 109.46515 * 65.81797 * 4 3 2 30 30 H 1.08998 * 109.44818 * 305.84715 * 4 3 2 31 31 H 1.09001 * 109.50042 * 180.87529 * 5 4 3 32 32 H 1.09002 * 109.50303 * 60.76004 * 5 4 3 33 33 H 1.08999 * 109.52267 * 297.75533 * 6 5 4 34 34 H 1.08998 * 109.57850 * 177.59272 * 6 5 4 35 35 H 1.08996 * 109.50538 * 182.40930 * 7 6 5 36 36 H 1.09000 * 109.50504 * 62.28423 * 7 6 5 37 37 H 1.09006 * 109.47064 * 60.00108 * 13 12 10 38 38 H 1.08996 * 109.47512 * 299.99964 * 13 12 10 39 39 H 1.09006 * 109.46980 * 60.00170 * 14 13 12 40 40 H 1.09004 * 109.47328 * 300.00214 * 14 13 12 41 41 H 1.09006 * 109.47096 * 59.99991 * 15 14 13 42 42 H 1.09004 * 109.46828 * 300.00271 * 15 14 13 43 43 H 0.97000 * 120.00548 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4021 2.1615 1.0827 5 6 1.8218 3.6284 0.9636 6 6 3.3475 3.7261 1.0464 7 6 3.9668 2.8701 -0.0619 8 6 3.4850 1.4251 0.0869 9 1 3.8022 1.0343 1.0538 10 6 4.0766 0.5828 -1.0138 11 8 3.5161 0.5033 -2.0813 12 8 5.2260 -0.0794 -0.8083 13 6 5.7369 -0.8716 -1.9126 14 6 7.0443 -1.5469 -1.4938 15 6 7.5831 -2.3812 -2.6577 16 6 8.8705 -3.0468 -2.2450 17 1 9.2653 -2.8902 -1.2520 18 6 9.5451 -3.8550 -3.1355 19 7 9.0646 -4.0453 -4.3448 20 14 11.1406 -4.6807 -2.6236 21 1 12.2845 -3.7910 -2.9479 22 1 11.1159 -4.9424 -1.1620 23 1 11.2898 -5.9651 -3.3540 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7292 1.7671 2.0447 30 1 0.3171 2.0870 1.0095 31 1 1.3757 4.2016 1.7764 32 1 1.4829 4.0274 0.0075 33 1 3.6835 3.3632 2.0177 34 1 3.6545 4.7643 0.9193 35 1 5.0534 2.9014 0.0183 36 1 3.6617 3.2571 -1.0341 37 1 5.9213 -0.2238 -2.7697 38 1 5.0049 -1.6325 -2.1832 39 1 6.8604 -2.1946 -0.6366 40 1 7.7762 -0.7857 -1.2236 41 1 7.7672 -1.7331 -3.5147 42 1 6.8514 -3.1424 -2.9284 43 1 8.2359 -3.6169 -4.6105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745087672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = -129.209977 kcal Electronic energy + Delta-G solvation = -20939.392375 eV Core-core repulsion = 17789.774252 eV Total energy + Delta-G solvation = -3149.618123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99317 -39.90467 -37.81697 -36.32175 -35.40145 -33.75485 -32.52302 -30.67433 -28.79457 -26.32147 -25.48888 -24.74778 -22.52751 -22.47057 -22.02284 -20.68800 -19.17651 -18.69041 -17.93375 -17.75257 -16.59243 -16.14507 -15.87415 -15.72460 -15.65244 -15.36417 -14.83529 -14.58870 -14.44479 -14.34108 -13.95270 -13.74009 -13.52874 -12.81519 -12.76657 -12.71826 -12.70808 -12.41694 -12.26755 -12.13015 -12.10833 -11.96501 -11.88078 -11.64742 -11.56359 -11.27805 -11.18005 -10.76315 -10.58435 -9.44922 -8.73440 -6.44804 0.98524 1.40555 1.52884 1.62115 1.80074 2.55491 2.70839 3.12258 3.42336 3.68164 3.82051 3.85605 3.88565 3.89656 4.05734 4.11586 4.18948 4.23483 4.28693 4.45636 4.51725 4.57842 4.62620 4.65831 4.70555 4.83583 4.84858 4.90973 5.01404 5.03330 5.13196 5.17275 5.20371 5.26882 5.35500 5.37083 5.42958 5.80014 5.91893 6.00185 6.13261 6.50732 6.61872 7.37690 8.67692 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034145 B = 0.003144 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.844683 B = 8903.078024 C = 9311.147443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.037 3.963 3 N -0.534 5.534 4 C 0.050 3.950 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.108 4.108 8 C 0.102 3.898 9 H 0.085 0.915 10 C 0.457 3.543 11 O -0.522 6.522 12 O -0.359 6.359 13 C 0.079 3.921 14 C -0.087 4.087 15 C 0.010 3.990 16 C -0.620 4.620 17 H 0.057 0.943 18 C -0.040 4.040 19 N -0.938 5.938 20 Si 1.124 2.876 21 H -0.271 1.271 22 H -0.266 1.266 23 H -0.283 1.283 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.068 0.932 41 H -0.006 1.006 42 H -0.007 1.007 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.400 15.712 15.555 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 N -0.262 5.262 4 C -0.077 4.077 5 C -0.155 4.155 6 C -0.150 4.150 7 C -0.146 4.146 8 C -0.007 4.007 9 H 0.103 0.897 10 C 0.300 3.700 11 O -0.410 6.410 12 O -0.276 6.276 13 C 0.005 3.995 14 C -0.125 4.125 15 C -0.027 4.027 16 C -0.658 4.658 17 H 0.075 0.925 18 C -0.237 4.237 19 N -0.575 5.575 20 Si 0.944 3.056 21 H -0.196 1.196 22 H -0.191 1.191 23 H -0.208 1.208 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.012 0.988 42 H 0.012 0.988 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.495 14.883 14.255 25.784 hybrid contribution -1.028 0.226 0.305 1.096 sum -16.523 15.109 14.560 26.708 Atomic orbital electron populations 1.21808 0.92380 1.02735 1.02984 1.22239 0.98242 0.88541 1.00003 1.61810 1.02720 1.13295 1.48344 1.22398 1.00558 0.93858 0.90846 1.21658 0.95642 0.94948 1.03260 1.21579 0.95597 1.00282 0.97570 1.21629 1.01107 0.90358 1.01484 1.21354 0.89361 0.96056 0.93947 0.89721 1.24312 0.78408 0.77566 0.89716 1.90641 1.60909 1.61110 1.28339 1.86495 1.38867 1.58031 1.44159 1.23103 0.95988 0.93119 0.87278 1.21328 0.93331 0.98479 0.99319 1.19106 0.95641 0.94029 0.93924 1.22455 1.09123 1.32330 1.01878 0.92509 1.27553 1.06697 0.96245 0.93236 1.70890 1.22144 1.44147 1.20298 0.82864 0.71005 0.75777 0.75967 1.19624 1.19095 1.20829 0.91324 0.90327 0.92403 0.93266 0.94320 0.93565 0.88265 0.88673 0.91749 0.90631 0.89514 0.90059 0.91650 0.91927 0.92108 0.91540 0.91358 0.98772 0.98844 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.43 71.98 0.68 -1.66 16 2 C 0.04 0.83 5.31 86.30 0.46 1.29 16 3 N -0.53 -11.52 4.37 -875.46 -3.83 -15.35 16 4 C 0.05 0.69 5.04 86.33 0.44 1.13 16 5 C -0.12 -1.35 6.09 30.65 0.19 -1.17 16 6 C -0.11 -1.38 6.00 30.67 0.18 -1.20 16 7 C -0.11 -2.04 5.36 30.65 0.16 -1.88 16 8 C 0.10 2.37 2.33 44.20 0.10 2.48 16 9 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 10 C 0.46 14.65 5.97 71.24 0.42 15.07 16 11 O -0.52 -19.94 15.21 21.94 0.33 -19.61 16 12 O -0.36 -12.38 10.22 -51.42 -0.53 -12.90 16 13 C 0.08 3.03 5.47 71.98 0.39 3.43 16 14 C -0.09 -3.71 5.53 30.59 0.17 -3.54 16 15 C 0.01 0.54 4.28 29.84 0.13 0.67 16 16 C -0.62 -35.87 9.11 25.60 0.23 -35.64 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 18 C -0.04 -2.35 5.46 84.66 0.46 -1.89 16 19 N -0.94 -59.09 13.65 21.45 0.29 -58.80 16 20 Si 1.12 50.41 29.90 68.60 2.05 52.46 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 0.95 6.19 -2.39 -0.01 0.93 16 26 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 1.43 6.26 -2.39 -0.01 1.42 16 28 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.10 1.16 5.84 -2.39 -0.01 1.15 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 2.45 8.13 -2.38 -0.02 2.43 16 38 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 39 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 40 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 41 H -0.01 -0.34 8.01 -2.38 -0.02 -0.36 16 42 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 43 H 0.26 16.31 7.22 -92.71 -0.67 15.64 16 Total: -1.00 -70.30 341.45 3.40 -66.90 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.06 Total: 10.20 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.02 Total: -22.91 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -3.54 Total: -74.15 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.19 Total: -32.51 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.05 Total: 52.46 kcal Total: -70.30 3.40 -66.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745087672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.308 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds