Wall clock time and date at job start Mon Mar 30 2020 00:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47195 * 2 1 4 4 C 1.46846 * 110.99616 * 288.39255 * 3 2 1 5 5 C 1.53041 * 109.52354 * 174.16089 * 4 3 2 6 6 C 1.53113 * 109.28009 * 59.17750 * 5 4 3 7 7 C 1.53124 * 109.16010 * 302.34879 * 6 5 4 8 8 C 1.46843 * 111.00244 * 164.17973 * 3 2 1 9 9 H 1.09004 * 109.45902 * 65.83512 * 8 3 2 10 10 C 1.50692 * 109.46504 * 305.85528 * 8 3 2 11 11 O 1.20829 * 120.00036 * 331.07282 * 10 8 3 12 12 O 1.34232 * 120.00190 * 151.07082 * 10 8 3 13 13 C 1.45195 * 117.00056 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47404 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47645 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47353 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00015 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99664 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00056 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46953 * 90.00677 * 20 18 16 22 22 H 1.48506 * 109.47013 * 210.00601 * 20 18 16 23 23 H 1.48497 * 109.46932 * 330.00661 * 20 18 16 24 24 H 1.08992 * 109.47297 * 300.00492 * 1 2 3 25 25 H 1.09000 * 109.46684 * 60.00506 * 1 2 3 26 26 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46684 * 119.99494 * 2 1 3 28 28 H 1.08997 * 109.47739 * 239.99634 * 2 1 3 29 29 H 1.09004 * 109.46526 * 294.17747 * 4 3 2 30 30 H 1.09003 * 109.46555 * 54.14267 * 4 3 2 31 31 H 1.09001 * 109.49855 * 299.23723 * 5 4 3 32 32 H 1.08999 * 109.53476 * 179.13816 * 5 4 3 33 33 H 1.08990 * 109.52636 * 182.44336 * 6 5 4 34 34 H 1.08999 * 109.57436 * 62.27929 * 6 5 4 35 35 H 1.09002 * 109.49896 * 297.71131 * 7 6 5 36 36 H 1.09007 * 109.50298 * 177.59210 * 7 6 5 37 37 H 1.09001 * 109.47479 * 299.99971 * 13 12 10 38 38 H 1.08995 * 109.47404 * 60.00102 * 13 12 10 39 39 H 1.09004 * 109.46948 * 300.00585 * 14 13 12 40 40 H 1.09003 * 109.47301 * 59.99402 * 14 13 12 41 41 H 1.08999 * 109.46781 * 299.99816 * 15 14 13 42 42 H 1.09003 * 109.47327 * 59.99334 * 15 14 13 43 43 H 0.97001 * 119.99793 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7873 2.0253 -1.3009 5 6 2.1745 3.5036 -1.2198 6 6 3.6506 3.6189 -0.8297 7 6 3.8752 2.9024 0.5048 8 6 3.4387 1.4415 0.3737 9 1 4.0364 0.9516 -0.3949 10 6 3.6395 0.7374 1.6908 11 8 2.7426 0.7016 2.4997 12 8 4.8147 0.1498 1.9654 13 6 4.9368 -0.5103 3.2528 14 6 6.3355 -1.1161 3.3849 15 6 6.4640 -1.8123 4.7412 16 6 7.8419 -2.4084 4.8714 17 1 8.5546 -2.3018 4.0670 18 6 8.1923 -3.0908 6.0171 19 7 9.3946 -3.6115 6.1305 20 14 6.9593 -3.2759 7.4081 21 1 6.1699 -4.5176 7.2079 22 1 7.6819 -3.3521 8.7033 23 1 6.0460 -2.1050 7.4189 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 2.3927 1.5324 -2.0617 30 1 0.7331 1.9399 -1.5646 31 1 1.5598 4.0001 -0.4690 32 1 2.0165 3.9755 -2.1896 33 1 3.9196 4.6702 -0.7285 34 1 4.2689 3.1572 -1.5995 35 1 3.2873 3.3896 1.2827 36 1 4.9325 2.9442 0.7669 37 1 4.7792 0.2161 4.0501 38 1 4.1897 -1.3004 3.3283 39 1 6.4936 -1.8424 2.5876 40 1 7.0824 -0.3258 3.3095 41 1 6.3058 -1.0862 5.5386 42 1 5.7171 -2.6027 4.8161 43 1 9.6413 -4.0913 6.9367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745087673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:35 Heat of formation + Delta-G solvation = -103.780856 kcal Electronic energy + Delta-G solvation = -20968.946356 eV Core-core repulsion = 17820.430923 eV Total energy + Delta-G solvation = -3148.515434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81397 -38.87031 -36.39977 -34.60232 -34.07042 -32.02497 -31.53293 -30.05446 -27.70907 -25.29001 -24.43344 -22.91695 -21.78566 -20.91919 -20.30517 -19.82049 -17.63177 -17.02827 -16.57505 -16.40200 -15.50288 -15.29813 -14.84831 -14.55694 -14.21859 -13.90589 -13.81062 -13.53736 -13.35867 -12.78678 -12.74783 -12.29712 -12.12093 -11.98481 -11.95998 -11.62609 -11.41651 -11.18660 -11.04922 -10.96283 -10.91520 -10.63423 -10.41340 -10.33720 -9.94779 -9.78888 -9.70782 -9.25780 -8.64244 -8.57587 -6.07886 -4.06940 2.24990 2.64825 3.29384 3.37029 3.40678 3.56810 4.42349 4.42499 4.48667 4.58204 4.75013 4.85771 4.93091 4.95884 5.09529 5.19747 5.25450 5.28420 5.33551 5.37447 5.44854 5.48525 5.54005 5.58241 5.66830 5.77322 5.79837 5.83009 5.85467 6.01224 6.07774 6.32248 6.37792 6.66283 6.66882 6.75306 6.80875 7.20199 7.31527 7.71854 7.92201 8.48921 8.96360 9.53669 11.05311 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.003370 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.787799 B = 8307.321501 C = 8790.580513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.042 3.958 3 N -0.520 5.520 4 C 0.057 3.943 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.108 4.108 8 C 0.097 3.903 9 H 0.073 0.927 10 C 0.459 3.541 11 O -0.492 6.492 12 O -0.358 6.358 13 C 0.066 3.934 14 C -0.101 4.101 15 C -0.010 4.010 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.902 5.902 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 13.235 -16.598 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.247 5.247 4 C -0.071 4.071 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.146 4.146 8 C -0.013 4.013 9 H 0.090 0.910 10 C 0.300 3.700 11 O -0.378 6.378 12 O -0.274 6.274 13 C -0.007 4.007 14 C -0.139 4.139 15 C -0.048 4.048 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.706 3.294 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.609 13.345 -15.836 26.547 hybrid contribution -0.124 -0.789 0.386 0.888 sum -16.733 12.556 -15.450 26.006 Atomic orbital electron populations 1.21707 0.94236 1.01545 1.02403 1.22233 0.97023 0.88105 1.01202 1.61736 1.14703 1.18088 1.30165 1.22174 1.01579 0.94815 0.88507 1.21635 0.96581 0.95614 1.01923 1.21571 0.96654 1.00843 0.96523 1.21578 1.02072 0.91711 0.99274 1.21204 0.90674 0.97160 0.92250 0.90950 1.23358 0.80716 0.76677 0.89241 1.90659 1.42709 1.55933 1.48514 1.86507 1.36047 1.64551 1.40311 1.23491 1.00716 0.95794 0.80669 1.21558 0.91780 0.99837 1.00702 1.19518 0.98143 0.95411 0.91715 1.21056 0.97093 1.34237 1.03602 0.90800 1.25017 0.95177 0.94919 0.98291 1.69907 1.19251 1.36634 1.28240 0.86783 0.81694 0.79111 0.81763 1.20201 1.21253 1.18959 0.91538 0.92877 0.92281 0.90285 0.94695 0.94579 0.89892 0.90773 0.91207 0.90974 0.91743 0.90173 0.90157 0.91492 0.91625 0.91602 0.91489 0.96264 0.96740 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.96 37.16 0.37 -0.95 16 2 C 0.04 0.46 5.32 -3.82 -0.02 0.44 16 3 N -0.52 -5.70 4.21 -228.08 -0.96 -6.66 16 4 C 0.06 0.46 5.30 -3.83 -0.02 0.44 16 5 C -0.12 -0.84 6.09 -26.65 -0.16 -1.00 16 6 C -0.12 -0.86 6.00 -26.61 -0.16 -1.02 16 7 C -0.11 -1.06 5.36 -26.65 -0.14 -1.20 16 8 C 0.10 1.12 2.34 -68.88 -0.16 0.96 16 9 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 10 C 0.46 6.97 5.82 36.00 0.21 7.18 16 11 O -0.49 -8.69 15.12 -18.75 -0.28 -8.98 16 12 O -0.36 -5.87 10.22 -39.26 -0.40 -6.27 16 13 C 0.07 1.17 5.47 37.16 0.20 1.38 16 14 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 15 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 16 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 20 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.42 6.65 -51.93 -0.35 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.07 5.68 -51.93 -0.30 0.77 16 28 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.60 6.49 -51.93 -0.34 0.26 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.18 8.13 -51.93 -0.42 0.75 16 38 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 42 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -31.70 340.02 -8.66 -40.36 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -7.67 Total: -3.95 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.57 Total: -9.67 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: -0.19 Total: -33.70 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.68 Total: -15.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.70 -8.66 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745087673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.420 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds