Wall clock time and date at job start Mon Mar 30 2020 00:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47195 * 2 1 4 4 C 1.46846 * 110.99616 * 288.39255 * 3 2 1 5 5 C 1.53041 * 109.52354 * 174.16089 * 4 3 2 6 6 C 1.53113 * 109.28009 * 59.17750 * 5 4 3 7 7 C 1.53124 * 109.16010 * 302.34879 * 6 5 4 8 8 C 1.46843 * 111.00244 * 164.17973 * 3 2 1 9 9 H 1.09004 * 109.45902 * 65.83512 * 8 3 2 10 10 C 1.50692 * 109.46504 * 305.85528 * 8 3 2 11 11 O 1.20829 * 120.00036 * 331.07282 * 10 8 3 12 12 O 1.34232 * 120.00190 * 151.07082 * 10 8 3 13 13 C 1.45195 * 117.00056 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47404 * 180.02562 * 13 12 10 15 15 C 1.52992 * 109.47645 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47353 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00015 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99664 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00056 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46953 * 90.00677 * 20 18 16 22 22 H 1.48506 * 109.47013 * 210.00601 * 20 18 16 23 23 H 1.48497 * 109.46932 * 330.00661 * 20 18 16 24 24 H 1.08992 * 109.47297 * 300.00492 * 1 2 3 25 25 H 1.09000 * 109.46684 * 60.00506 * 1 2 3 26 26 H 1.09002 * 109.46799 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46684 * 119.99494 * 2 1 3 28 28 H 1.08997 * 109.47739 * 239.99634 * 2 1 3 29 29 H 1.09004 * 109.46526 * 294.17747 * 4 3 2 30 30 H 1.09003 * 109.46555 * 54.14267 * 4 3 2 31 31 H 1.09001 * 109.49855 * 299.23723 * 5 4 3 32 32 H 1.08999 * 109.53476 * 179.13816 * 5 4 3 33 33 H 1.08990 * 109.52636 * 182.44336 * 6 5 4 34 34 H 1.08999 * 109.57436 * 62.27929 * 6 5 4 35 35 H 1.09002 * 109.49896 * 297.71131 * 7 6 5 36 36 H 1.09007 * 109.50298 * 177.59210 * 7 6 5 37 37 H 1.09001 * 109.47479 * 299.99971 * 13 12 10 38 38 H 1.08995 * 109.47404 * 60.00102 * 13 12 10 39 39 H 1.09004 * 109.46948 * 300.00585 * 14 13 12 40 40 H 1.09003 * 109.47301 * 59.99402 * 14 13 12 41 41 H 1.08999 * 109.46781 * 299.99816 * 15 14 13 42 42 H 1.09003 * 109.47327 * 59.99334 * 15 14 13 43 43 H 0.97001 * 119.99793 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7873 2.0253 -1.3009 5 6 2.1745 3.5036 -1.2198 6 6 3.6506 3.6189 -0.8297 7 6 3.8752 2.9024 0.5048 8 6 3.4387 1.4415 0.3737 9 1 4.0364 0.9516 -0.3949 10 6 3.6395 0.7374 1.6908 11 8 2.7426 0.7016 2.4997 12 8 4.8147 0.1498 1.9654 13 6 4.9368 -0.5103 3.2528 14 6 6.3355 -1.1161 3.3849 15 6 6.4640 -1.8123 4.7412 16 6 7.8419 -2.4084 4.8714 17 1 8.5546 -2.3018 4.0670 18 6 8.1923 -3.0908 6.0171 19 7 9.3946 -3.6115 6.1305 20 14 6.9593 -3.2759 7.4081 21 1 6.1699 -4.5176 7.2079 22 1 7.6819 -3.3521 8.7033 23 1 6.0460 -2.1050 7.4189 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 2.3927 1.5324 -2.0617 30 1 0.7331 1.9399 -1.5646 31 1 1.5598 4.0001 -0.4690 32 1 2.0165 3.9755 -2.1896 33 1 3.9196 4.6702 -0.7285 34 1 4.2689 3.1572 -1.5995 35 1 3.2873 3.3896 1.2827 36 1 4.9325 2.9442 0.7669 37 1 4.7792 0.2161 4.0501 38 1 4.1897 -1.3004 3.3283 39 1 6.4936 -1.8424 2.5876 40 1 7.0824 -0.3258 3.3095 41 1 6.3058 -1.0862 5.5386 42 1 5.7171 -2.6027 4.8161 43 1 9.6413 -4.0913 6.9367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745087673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:35 Heat of formation + Delta-G solvation = -122.701674 kcal Electronic energy + Delta-G solvation = -20969.766825 eV Core-core repulsion = 17820.430923 eV Total energy + Delta-G solvation = -3149.335902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.94273 -39.80925 -37.71895 -35.97192 -35.30353 -33.92154 -32.48106 -30.78253 -29.50484 -26.32180 -25.27776 -24.48187 -22.62261 -22.13827 -21.82945 -20.67569 -19.05406 -18.76098 -17.84008 -17.66372 -16.57428 -16.24101 -16.16100 -15.74918 -15.54380 -14.93968 -14.82101 -14.59680 -14.44217 -14.23710 -13.94686 -13.73906 -13.62117 -12.88675 -12.86154 -12.71980 -12.65133 -12.43373 -12.18988 -12.12548 -11.96667 -11.86685 -11.76440 -11.61320 -11.42993 -11.39154 -11.27491 -11.08238 -10.79392 -9.42287 -8.32061 -6.37190 1.05944 1.35471 1.37015 1.47993 1.49385 2.34117 2.74353 3.03037 3.48760 3.72059 3.87988 3.92165 3.95827 3.99278 4.08426 4.16775 4.22601 4.33713 4.36563 4.51595 4.54757 4.68286 4.69809 4.71735 4.72638 4.87717 4.91206 4.92885 5.04562 5.06142 5.16811 5.20456 5.28398 5.31926 5.45368 5.45472 5.46847 5.60237 5.85354 6.03569 6.23751 6.67407 6.71644 7.27392 8.84540 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.003370 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.787799 B = 8307.321501 C = 8790.580513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.040 3.960 3 N -0.533 5.533 4 C 0.054 3.946 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.107 4.107 8 C 0.100 3.900 9 H 0.084 0.916 10 C 0.458 3.542 11 O -0.519 6.519 12 O -0.361 6.361 13 C 0.075 3.925 14 C -0.091 4.091 15 C -0.009 4.009 16 C -0.535 4.535 17 H 0.036 0.964 18 C 0.006 3.994 19 N -0.949 5.949 20 Si 0.949 3.051 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.247 1.247 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.182 14.356 -17.593 29.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.087 4.087 3 N -0.261 5.261 4 C -0.072 4.072 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.009 4.009 9 H 0.101 0.899 10 C 0.301 3.699 11 O -0.407 6.407 12 O -0.278 6.278 13 C 0.002 3.998 14 C -0.129 4.129 15 C -0.046 4.046 16 C -0.573 4.573 17 H 0.054 0.946 18 C -0.191 4.191 19 N -0.589 5.589 20 Si 0.772 3.228 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.170 1.170 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.579 14.484 -16.861 28.970 hybrid contribution 0.535 -1.125 0.608 1.387 sum -18.045 13.359 -16.252 27.717 Atomic orbital electron populations 1.21662 0.93041 1.02136 1.02443 1.22221 0.98044 0.88257 1.00220 1.61785 1.14050 1.18113 1.32144 1.22314 1.02487 0.95278 0.87148 1.21645 0.96046 0.94860 1.02903 1.21577 0.97147 1.01332 0.95048 1.21617 1.01783 0.90541 1.00599 1.21331 0.91656 0.97787 0.90150 0.89855 1.24173 0.79634 0.75824 0.90238 1.90641 1.43343 1.56997 1.49745 1.86500 1.37082 1.64724 1.39460 1.23174 0.98983 0.96043 0.81610 1.21317 0.93407 0.99541 0.98639 1.19443 0.95398 0.95802 0.93982 1.21395 0.98720 1.34485 1.02675 0.94580 1.25997 0.97243 0.94506 1.01371 1.70056 1.21588 1.37887 1.29409 0.85670 0.79203 0.80010 0.77873 1.19046 1.20771 1.17048 0.93225 0.90995 0.91475 0.93304 0.93534 0.93656 0.88831 0.91682 0.88867 0.89619 0.90764 0.91550 0.90051 0.91248 0.91321 0.91881 0.91749 0.95650 0.95807 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.96 71.98 0.72 -1.63 16 2 C 0.04 0.84 5.32 86.30 0.46 1.30 16 3 N -0.53 -10.91 4.21 -875.51 -3.69 -14.60 16 4 C 0.05 0.73 5.30 86.33 0.46 1.19 16 5 C -0.12 -1.30 6.09 30.65 0.19 -1.11 16 6 C -0.11 -1.35 6.00 30.67 0.18 -1.17 16 7 C -0.11 -1.94 5.36 30.65 0.16 -1.78 16 8 C 0.10 2.20 2.34 44.19 0.10 2.31 16 9 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 10 C 0.46 13.72 5.82 71.23 0.41 14.14 16 11 O -0.52 -18.36 15.12 21.95 0.33 -18.03 16 12 O -0.36 -11.65 10.22 -51.44 -0.53 -12.17 16 13 C 0.08 2.61 5.47 71.98 0.39 3.00 16 14 C -0.09 -3.63 5.53 30.59 0.17 -3.46 16 15 C -0.01 -0.41 4.04 29.84 0.12 -0.29 16 16 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 17 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 18 C 0.01 0.35 5.47 84.66 0.46 0.81 16 19 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 20 Si 0.95 44.38 27.47 68.60 1.88 46.27 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.96 6.65 -2.39 -0.02 0.94 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.32 5.68 -2.39 -0.01 1.30 16 28 H 0.05 0.85 8.06 -2.39 -0.02 0.83 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.09 1.07 6.49 -2.39 -0.02 1.06 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 38 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 39 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 42 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -69.08 340.02 3.28 -65.80 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.90 Total: 9.66 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.08 Total: -17.48 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -3.39 Total: -74.05 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.19 Total: -30.20 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -69.08 3.28 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745087673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.900 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds