Wall clock time and date at job start Mon Mar 30 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48501 * 109.46881 * 299.72778 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46904 * 109.47464 * 119.99140 * 2 1 3 13 13 C 1.46899 * 111.00192 * 275.00757 * 12 2 1 14 14 C 1.52996 * 109.47088 * 179.97438 * 13 12 2 15 15 C 1.52998 * 109.46254 * 295.04912 * 14 13 12 16 16 C 1.53016 * 109.46771 * 179.84557 * 15 14 13 17 17 C 1.52964 * 109.43209 * 59.78621 * 16 15 14 18 18 C 1.52957 * 109.81688 * 300.30378 * 17 16 15 19 19 C 1.52985 * 109.46463 * 174.99822 * 14 13 12 20 20 O 1.43715 * 109.40216 * 60.40005 * 17 16 15 21 21 C 1.44797 * 104.78708 * 95.49830 * 20 17 16 22 22 C 1.54915 * 101.72855 * 36.06762 * 21 20 17 23 23 O 1.43299 * 109.65311 * 179.72265 * 17 16 15 24 24 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 25 25 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 26 26 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 27 27 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 28 28 H 1.00893 * 110.99791 * 151.04412 * 12 2 1 29 29 H 1.08998 * 109.47003 * 299.99755 * 13 12 2 30 30 H 1.09000 * 109.47188 * 59.99680 * 13 12 2 31 31 H 1.08999 * 109.46796 * 55.01057 * 14 13 12 32 32 H 1.09004 * 109.46604 * 299.84485 * 15 14 13 33 33 H 1.08991 * 109.47290 * 59.84526 * 15 14 13 34 34 H 1.09001 * 109.47839 * 299.80185 * 16 15 14 35 35 H 1.08996 * 109.47853 * 179.77435 * 16 15 14 36 36 H 1.09004 * 109.47465 * 299.69850 * 18 17 16 37 37 H 1.09000 * 109.48632 * 179.68555 * 18 17 16 38 38 H 1.08999 * 109.47009 * 300.14769 * 19 14 13 39 39 H 1.09005 * 109.47423 * 60.14902 * 19 14 13 40 40 H 1.08996 * 110.97218 * 277.95738 * 21 20 17 41 41 H 1.08999 * 111.00806 * 154.19129 * 21 20 17 42 42 H 1.09004 * 110.69459 * 206.08162 * 22 21 20 43 43 H 1.08997 * 110.69372 * 82.87400 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0387 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0198 -0.6923 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5951 -0.5327 3.5745 15 6 1.5830 -1.6101 3.9694 16 6 2.0974 -2.3684 5.1948 17 6 2.2876 -1.3905 6.3556 18 6 3.2950 -0.3087 5.9625 19 6 2.7788 0.4462 4.7357 20 8 1.0277 -0.7768 6.6741 21 6 0.4934 -1.5718 7.7600 22 6 1.7776 -1.9323 8.5479 23 8 2.7632 -2.0970 7.5080 24 1 -0.3634 0.4118 -0.9415 25 1 -0.3633 -1.0214 0.1140 26 1 -0.3633 0.6094 0.8274 27 1 2.2478 -1.8381 -3.4691 28 1 2.9173 -1.1203 1.0288 29 1 2.7587 1.0465 2.1182 30 1 1.0870 0.6165 2.5525 31 1 3.5508 -1.0013 3.3398 32 1 0.6277 -1.1416 4.2065 33 1 1.4509 -2.3056 3.1408 34 1 3.0510 -2.8397 4.9568 35 1 1.3747 -3.1333 5.4787 36 1 4.2530 -0.7725 5.7274 37 1 3.4222 0.3880 6.7911 38 1 3.4982 1.2147 4.4527 39 1 1.8226 0.9131 4.9722 40 1 0.0028 -2.4687 7.3821 41 1 -0.1896 -0.9853 8.3744 42 1 1.6421 -2.8618 9.1008 43 1 2.0581 -1.1207 9.2193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749301257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:59 Heat of formation + Delta-G solvation = -108.774957 kcal Electronic energy + Delta-G solvation = -21622.879464 eV Core-core repulsion = 18474.147470 eV Total energy + Delta-G solvation = -3148.731994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98704 -37.80450 -35.56692 -35.10478 -32.67430 -31.10758 -30.85419 -29.27850 -27.60474 -24.87950 -23.84387 -23.24225 -22.70114 -20.89067 -19.72845 -19.40691 -17.46708 -17.30706 -16.92903 -15.67669 -15.44114 -14.74517 -14.47922 -14.32860 -14.05311 -13.61659 -13.44609 -13.09666 -13.05506 -12.69120 -12.58946 -12.34688 -12.18129 -11.82596 -11.75280 -11.37713 -11.28602 -11.13119 -10.96307 -10.54022 -10.42253 -10.36383 -10.24219 -10.09065 -9.88849 -9.60871 -9.43337 -8.85789 -8.20351 -7.41913 -6.44052 -4.05051 3.20341 3.40389 3.43092 3.61638 3.77466 4.31233 4.49732 4.56281 4.61719 4.71424 4.86290 4.90497 5.09341 5.16597 5.24869 5.28699 5.37671 5.38152 5.49630 5.51795 5.62502 5.73156 5.77574 5.90301 6.01238 6.05273 6.14949 6.23151 6.29047 6.39823 6.51475 6.62488 6.71595 6.76208 6.87497 6.97366 6.99317 7.52556 7.80659 8.18678 8.41819 8.56071 8.98174 9.63730 10.95809 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042967 B = 0.003700 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.499215 B = 7565.166018 C = 7614.047088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.188 3.812 3 H -0.008 1.008 4 C -0.603 4.603 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.907 5.907 8 Si 1.048 2.952 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.679 5.679 13 C 0.063 3.937 14 C -0.085 4.085 15 C -0.098 4.098 16 C -0.135 4.135 17 C 0.258 3.742 18 C -0.115 4.115 19 C -0.109 4.109 20 O -0.363 6.363 21 C 0.013 3.987 22 C 0.020 3.980 23 O -0.382 6.382 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.017 0.983 27 H 0.267 0.733 28 H 0.334 0.666 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 0.249 24.069 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.079 3.921 3 H 0.009 0.991 4 C -0.641 4.641 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.541 5.541 8 Si 0.876 3.124 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.310 5.310 13 C -0.067 4.067 14 C -0.103 4.103 15 C -0.135 4.135 16 C -0.173 4.173 17 C 0.182 3.818 18 C -0.153 4.153 19 C -0.148 4.148 20 O -0.283 6.283 21 C -0.063 4.063 22 C -0.056 4.056 23 O -0.303 6.303 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.514 1.224 23.004 23.086 hybrid contribution 1.137 -0.780 1.086 1.756 sum -0.377 0.444 24.090 24.097 Atomic orbital electron populations 1.22109 0.98420 1.00198 0.98657 1.19399 0.92066 0.92295 0.88362 0.99090 1.22102 1.40596 1.10126 0.91323 0.92246 1.25722 0.94658 1.04990 0.92099 1.70853 1.41844 1.09936 1.31459 0.84000 0.77109 0.75343 0.75912 1.21165 1.20008 1.21247 1.60555 1.32469 1.32721 1.05208 1.21976 0.99689 0.93921 0.91137 1.21184 0.99039 0.95904 0.94220 1.21382 0.98460 0.97766 0.95895 1.22141 1.02492 0.97681 0.94999 1.23436 0.82661 0.89272 0.86471 1.21795 0.97808 0.96831 0.98872 1.21504 1.01781 0.97828 0.93642 1.89298 1.33780 1.52542 1.52704 1.24349 0.96821 0.96775 0.88387 1.24154 0.87383 1.02545 0.91527 1.88890 1.44763 1.74277 1.22380 0.93102 0.93220 0.96427 0.92249 0.84820 0.96332 0.91822 0.91550 0.91663 0.89876 0.90537 0.91724 0.90215 0.91315 0.91665 0.91107 0.90740 0.87597 0.88540 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.05 37.16 0.34 -2.81 16 2 C 0.19 4.57 2.18 -68.87 -0.15 4.42 16 3 H -0.01 -0.21 6.46 -51.92 -0.34 -0.54 16 4 C -0.60 -17.09 8.83 -34.44 -0.30 -17.39 16 5 H 0.06 1.80 7.92 -52.49 -0.42 1.39 16 6 C 0.03 0.89 5.29 -17.82 -0.09 0.80 16 7 N -0.91 -28.06 13.70 55.43 0.76 -27.30 16 8 Si 1.05 25.58 26.29 -169.99 -4.47 21.12 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.27 -6.23 5.76 56.52 0.33 -5.90 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 N -0.68 -14.13 5.75 -107.95 -0.62 -14.75 16 13 C 0.06 1.09 4.87 -3.83 -0.02 1.07 16 14 C -0.08 -1.21 2.33 -90.63 -0.21 -1.42 16 15 C -0.10 -1.38 4.95 -26.72 -0.13 -1.51 16 16 C -0.14 -1.69 5.29 -26.74 -0.14 -1.83 16 17 C 0.26 3.12 1.03 -26.77 -0.03 3.09 16 18 C -0.12 -1.34 5.34 -26.74 -0.14 -1.49 16 19 C -0.11 -1.37 5.06 -26.73 -0.14 -1.50 16 20 O -0.36 -4.40 9.67 -59.03 -0.57 -4.97 16 21 C 0.01 0.11 7.91 38.17 0.30 0.41 16 22 C 0.02 0.17 8.08 38.17 0.31 0.48 16 23 O -0.38 -4.51 10.87 -59.03 -0.64 -5.15 16 24 H 0.05 1.21 4.88 -51.93 -0.25 0.96 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.02 0.35 7.62 -51.93 -0.40 -0.04 16 27 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 28 H 0.33 7.02 8.26 -39.30 -0.32 6.69 16 29 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 30 H 0.06 1.13 7.56 -51.93 -0.39 0.73 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.97 7.69 -51.93 -0.40 0.57 16 33 H 0.08 1.31 7.75 -51.93 -0.40 0.91 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -31.04 328.61 -8.62 -39.65 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.61 Total: 4.15 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -0.41 Total: -17.69 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.14 Total: -42.05 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.21 Total: -10.13 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.47 Total: 21.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.04 -8.62 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749301257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.122 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds