Wall clock time and date at job start Mon Mar 30 2020 00:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47206 * 239.99820 * 2 1 3 5 5 H 1.07999 * 119.99928 * 245.62848 * 4 2 1 6 6 C 1.37875 * 120.00048 * 65.63108 * 4 2 1 7 7 N 1.31520 * 119.99613 * 197.14809 * 6 4 2 8 8 Si 1.86797 * 120.00328 * 17.42222 * 6 4 2 9 9 H 1.48497 * 109.47527 * 179.72605 * 8 6 4 10 10 H 1.48501 * 109.46881 * 299.72778 * 8 6 4 11 11 H 1.48502 * 109.46663 * 59.72455 * 8 6 4 12 12 N 1.46904 * 109.47464 * 119.99140 * 2 1 3 13 13 C 1.46899 * 111.00192 * 275.00757 * 12 2 1 14 14 C 1.52996 * 109.47088 * 179.97438 * 13 12 2 15 15 C 1.52998 * 109.46254 * 295.04912 * 14 13 12 16 16 C 1.53016 * 109.46771 * 179.84557 * 15 14 13 17 17 C 1.52964 * 109.43209 * 59.78621 * 16 15 14 18 18 C 1.52957 * 109.81688 * 300.30378 * 17 16 15 19 19 C 1.52985 * 109.46463 * 174.99822 * 14 13 12 20 20 O 1.43715 * 109.40216 * 60.40005 * 17 16 15 21 21 C 1.44797 * 104.78708 * 95.49830 * 20 17 16 22 22 C 1.54915 * 101.72855 * 36.06762 * 21 20 17 23 23 O 1.43299 * 109.65311 * 179.72265 * 17 16 15 24 24 H 1.08994 * 109.47447 * 66.37792 * 1 2 3 25 25 H 1.09003 * 109.46645 * 186.37047 * 1 2 3 26 26 H 1.08995 * 109.47103 * 306.36950 * 1 2 3 27 27 H 0.96992 * 120.00292 * 355.20107 * 7 6 4 28 28 H 1.00893 * 110.99791 * 151.04412 * 12 2 1 29 29 H 1.08998 * 109.47003 * 299.99755 * 13 12 2 30 30 H 1.09000 * 109.47188 * 59.99680 * 13 12 2 31 31 H 1.08999 * 109.46796 * 55.01057 * 14 13 12 32 32 H 1.09004 * 109.46604 * 299.84485 * 15 14 13 33 33 H 1.08991 * 109.47290 * 59.84526 * 15 14 13 34 34 H 1.09001 * 109.47839 * 299.80185 * 16 15 14 35 35 H 1.08996 * 109.47853 * 179.77435 * 16 15 14 36 36 H 1.09004 * 109.47465 * 299.69850 * 18 17 16 37 37 H 1.09000 * 109.48632 * 179.68555 * 18 17 16 38 38 H 1.08999 * 109.47009 * 300.14769 * 19 14 13 39 39 H 1.09005 * 109.47423 * 60.14902 * 19 14 13 40 40 H 1.08996 * 110.97218 * 277.95738 * 21 20 17 41 41 H 1.08999 * 111.00806 * 154.19129 * 21 20 17 42 42 H 1.09004 * 110.69459 * 206.08162 * 22 21 20 43 43 H 1.08997 * 110.69372 * 82.87400 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5762 -1.6385 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9232 -0.9278 -3.5509 8 14 1.3088 1.6192 -2.6501 9 1 1.1221 1.9469 -4.0864 10 1 0.0387 1.8580 -1.9187 11 1 2.3771 2.4794 -2.0809 12 7 2.0198 -0.6923 1.1995 13 6 2.0824 0.2229 2.3469 14 6 2.5951 -0.5327 3.5745 15 6 1.5830 -1.6101 3.9694 16 6 2.0974 -2.3684 5.1948 17 6 2.2876 -1.3905 6.3556 18 6 3.2950 -0.3087 5.9625 19 6 2.7788 0.4462 4.7357 20 8 1.0277 -0.7768 6.6741 21 6 0.4934 -1.5718 7.7600 22 6 1.7776 -1.9323 8.5479 23 8 2.7632 -2.0970 7.5080 24 1 -0.3634 0.4118 -0.9415 25 1 -0.3633 -1.0214 0.1140 26 1 -0.3633 0.6094 0.8274 27 1 2.2478 -1.8381 -3.4691 28 1 2.9173 -1.1203 1.0288 29 1 2.7587 1.0465 2.1182 30 1 1.0870 0.6165 2.5525 31 1 3.5508 -1.0013 3.3398 32 1 0.6277 -1.1416 4.2065 33 1 1.4509 -2.3056 3.1408 34 1 3.0510 -2.8397 4.9568 35 1 1.3747 -3.1333 5.4787 36 1 4.2530 -0.7725 5.7274 37 1 3.4222 0.3880 6.7911 38 1 3.4982 1.2147 4.4527 39 1 1.8226 0.9131 4.9722 40 1 0.0028 -2.4687 7.3821 41 1 -0.1896 -0.9853 8.3744 42 1 1.6421 -2.8618 9.1008 43 1 2.0581 -1.1207 9.2193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749301257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:59 Heat of formation + Delta-G solvation = -129.913758 kcal Electronic energy + Delta-G solvation = -21623.796111 eV Core-core repulsion = 18474.147470 eV Total energy + Delta-G solvation = -3149.648641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82854 -39.02081 -37.17536 -35.94622 -34.59763 -32.53311 -31.86633 -30.50095 -28.81080 -26.85722 -25.10420 -24.15238 -23.67327 -22.05521 -21.47850 -20.62587 -19.60240 -18.08340 -17.76567 -16.76893 -16.44617 -16.16170 -16.01601 -15.59773 -15.24796 -15.02301 -14.49642 -14.47795 -14.21932 -13.91451 -13.79787 -13.65375 -13.49581 -13.23893 -13.03686 -12.84216 -12.69122 -12.35286 -12.22573 -12.12778 -11.86942 -11.60675 -11.57172 -11.43882 -11.22666 -11.07533 -10.98846 -10.40403 -10.35407 -9.13489 -8.73665 -6.37609 1.45294 1.51521 1.71394 2.46352 2.47426 2.96609 3.05365 3.46481 3.63653 3.71824 3.77774 3.88509 4.07872 4.15552 4.26284 4.30027 4.45938 4.51001 4.51740 4.52519 4.58335 4.70579 4.71863 4.80690 4.85522 4.87758 4.97059 4.98587 5.00092 5.02784 5.09035 5.13840 5.21538 5.27993 5.48581 5.56258 5.61951 5.80448 6.02390 6.17335 6.31353 6.69863 6.81170 7.40789 8.63125 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042967 B = 0.003700 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.499215 B = 7565.166018 C = 7614.047088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.189 3.811 3 H -0.005 1.005 4 C -0.606 4.606 5 H 0.023 0.977 6 C -0.020 4.020 7 N -0.938 5.938 8 Si 1.085 2.915 9 H -0.288 1.288 10 H -0.244 1.244 11 H -0.267 1.267 12 N -0.681 5.681 13 C 0.065 3.935 14 C -0.078 4.078 15 C -0.090 4.090 16 C -0.132 4.132 17 C 0.259 3.741 18 C -0.114 4.114 19 C -0.101 4.101 20 O -0.382 6.382 21 C 0.007 3.993 22 C 0.016 3.984 23 O -0.399 6.399 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.252 0.748 28 H 0.330 0.670 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 1.819 26.513 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.012 0.988 4 C -0.644 4.644 5 H 0.041 0.959 6 C -0.218 4.218 7 N -0.574 5.574 8 Si 0.907 3.093 9 H -0.214 1.214 10 H -0.168 1.168 11 H -0.193 1.193 12 N -0.312 5.312 13 C -0.064 4.064 14 C -0.096 4.096 15 C -0.127 4.127 16 C -0.170 4.170 17 C 0.182 3.818 18 C -0.151 4.151 19 C -0.139 4.139 20 O -0.303 6.303 21 C -0.069 4.069 22 C -0.060 4.060 23 O -0.321 6.321 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.147 0.853 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.148 0.852 42 H 0.136 0.864 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.077 2.776 25.493 25.727 hybrid contribution 1.328 -1.377 0.414 1.957 sum -0.750 1.398 25.907 25.956 Atomic orbital electron populations 1.22000 0.97235 1.00161 0.99463 1.19289 0.92919 0.91918 0.87960 0.98792 1.22336 1.39686 1.08885 0.93484 0.95881 1.27168 0.94306 1.08500 0.91849 1.70984 1.44270 1.09557 1.32586 0.83547 0.78792 0.70657 0.76328 1.21411 1.16824 1.19272 1.60511 1.32337 1.33343 1.04971 1.22043 0.99963 0.93663 0.90774 1.21113 0.98749 0.96090 0.93686 1.21244 0.98209 0.97339 0.95953 1.22079 1.02404 0.97827 0.94689 1.23326 0.82978 0.89019 0.86475 1.21780 0.97804 0.96908 0.98654 1.21414 1.01934 0.97491 0.93101 1.89273 1.33844 1.53289 1.53922 1.24604 0.97323 0.97087 0.87837 1.24413 0.86390 1.04237 0.90929 1.88864 1.45914 1.74355 1.22984 0.93794 0.94257 0.93491 0.93907 0.85254 0.96110 0.91770 0.91596 0.92391 0.92035 0.90636 0.91390 0.89945 0.90350 0.90666 0.91523 0.90436 0.85219 0.86359 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 9.05 71.98 0.65 -5.16 16 2 C 0.19 9.00 2.18 44.17 0.10 9.10 16 3 H -0.01 -0.25 6.46 -2.38 -0.02 -0.27 16 4 C -0.61 -34.85 8.83 25.60 0.23 -34.63 16 5 H 0.02 1.45 7.92 -2.91 -0.02 1.43 16 6 C -0.02 -1.17 5.29 84.65 0.45 -0.72 16 7 N -0.94 -59.48 13.70 21.45 0.29 -59.18 16 8 Si 1.09 50.43 26.29 68.60 1.80 52.23 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.24 -10.13 5.76 99.48 0.57 -9.55 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 12 N -0.68 -28.06 5.75 -495.45 -2.85 -30.91 16 13 C 0.06 2.15 4.87 86.30 0.42 2.57 16 14 C -0.08 -2.11 2.33 -10.80 -0.03 -2.14 16 15 C -0.09 -2.48 4.95 30.60 0.15 -2.33 16 16 C -0.13 -3.17 5.29 30.59 0.16 -3.01 16 17 C 0.26 5.80 1.03 30.57 0.03 5.83 16 18 C -0.11 -2.42 5.34 30.59 0.16 -2.26 16 19 C -0.10 -2.32 5.06 30.60 0.15 -2.17 16 20 O -0.38 -8.51 9.67 -126.22 -1.22 -9.73 16 21 C 0.01 0.11 7.91 72.64 0.57 0.68 16 22 C 0.02 0.22 8.08 72.64 0.59 0.81 16 23 O -0.40 -8.62 10.87 -126.22 -1.37 -10.00 16 24 H 0.04 1.99 4.88 -2.39 -0.01 1.98 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.80 7.62 -2.39 -0.02 1.78 16 27 H 0.25 16.22 8.73 -92.71 -0.81 15.42 16 28 H 0.33 14.01 8.26 -89.70 -0.74 13.27 16 29 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 30 H 0.06 2.13 7.56 -2.39 -0.02 2.11 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.68 7.69 -2.38 -0.02 1.66 16 33 H 0.06 1.95 7.75 -2.39 -0.02 1.93 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.61 7.69 -2.38 -0.02 1.59 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -67.10 328.61 0.36 -66.74 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.06 Total: 24.26 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 3.64 Total: -33.42 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -2.56 Total: -90.09 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -2.59 Total: -19.72 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.80 Total: 52.23 kcal Total: -67.10 0.36 -66.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749301257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.174 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds