Wall clock time and date at job start Mon Mar 30 2020 00:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.52991 * 109.46485 * 295.05302 * 14 13 12 16 16 C 1.53023 * 109.46289 * 179.84768 * 15 14 13 17 17 C 1.52966 * 109.43398 * 59.78710 * 16 15 14 18 18 C 1.52955 * 109.81514 * 300.29968 * 17 16 15 19 19 C 1.52994 * 109.46251 * 175.00046 * 14 13 12 20 20 O 1.43708 * 109.40108 * 60.40012 * 17 16 15 21 21 C 1.44793 * 104.78844 * 95.49315 * 20 17 16 22 22 C 1.54910 * 101.72622 * 36.06971 * 21 20 17 23 23 O 1.43298 * 109.64837 * 179.72019 * 17 16 15 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 29 29 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 30 30 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 31 31 H 1.09005 * 109.46418 * 55.02543 * 14 13 12 32 32 H 1.08998 * 109.47164 * 299.84353 * 15 14 13 33 33 H 1.08999 * 109.47301 * 59.84917 * 15 14 13 34 34 H 1.08998 * 109.47551 * 299.80042 * 16 15 14 35 35 H 1.08996 * 109.47993 * 179.77677 * 16 15 14 36 36 H 1.08993 * 109.47824 * 299.70180 * 18 17 16 37 37 H 1.09002 * 109.47308 * 179.67750 * 18 17 16 38 38 H 1.08997 * 109.47344 * 300.15327 * 19 14 13 39 39 H 1.09002 * 109.47049 * 60.14958 * 19 14 13 40 40 H 1.08994 * 110.98336 * 277.95502 * 21 20 17 41 41 H 1.09008 * 111.00783 * 154.19118 * 21 20 17 42 42 H 1.08996 * 110.69794 * 206.07667 * 22 21 20 43 43 H 1.09003 * 110.70030 * 82.87259 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 4.0394 -0.9785 -3.3311 16 6 4.5519 -1.7373 -4.5572 17 6 4.4949 -0.8229 -5.7821 18 6 3.0541 -0.3708 -6.0251 19 6 2.5438 0.3857 -4.7968 20 8 5.3254 0.3282 -5.5576 21 6 6.5921 -0.0038 -6.1754 22 6 6.1353 -0.8119 -7.4156 23 8 4.9802 -1.5271 -6.9320 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.9172 -1.1204 -1.0288 29 1 1.0871 0.6165 -2.5525 30 1 2.7588 1.0464 -2.1181 31 1 1.9706 -1.4077 -3.7503 32 1 4.6656 -0.1035 -3.1574 33 1 4.0761 -1.6307 -2.4586 34 1 3.9278 -2.6142 -4.7289 35 1 5.5814 -2.0517 -4.3859 36 1 2.4246 -1.2427 -6.2024 37 1 3.0208 0.2847 -6.8954 38 1 1.5157 0.7048 -4.9678 39 1 3.1712 1.2597 -4.6218 40 1 7.2009 -0.6180 -5.5120 41 1 7.1298 0.8967 -6.4728 42 1 6.9140 -1.5063 -7.7311 43 1 5.8606 -0.1432 -8.2314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749301258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:00 Heat of formation + Delta-G solvation = -127.753365 kcal Electronic energy + Delta-G solvation = -21566.268869 eV Core-core repulsion = 18416.713909 eV Total energy + Delta-G solvation = -3149.554960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82985 -39.03284 -37.05709 -35.94188 -34.50449 -32.24018 -31.89551 -30.21027 -28.63417 -27.32913 -25.28331 -24.14473 -23.70512 -22.12111 -21.52779 -20.58236 -18.54959 -18.07958 -17.73826 -16.93247 -16.51072 -16.21589 -16.02282 -15.58295 -15.15589 -14.79126 -14.64953 -14.46053 -14.06747 -13.88007 -13.80327 -13.52581 -13.20005 -13.06497 -12.93074 -12.86752 -12.65910 -12.33877 -12.28774 -12.18068 -12.13970 -11.97227 -11.53749 -11.43365 -11.21171 -11.06421 -10.84663 -10.57175 -10.34083 -9.03391 -8.13309 -6.27871 1.42199 1.43234 1.53479 2.41536 2.46718 2.97469 3.14990 3.58040 3.62312 3.71353 3.75995 3.98250 4.09881 4.11973 4.24779 4.32936 4.42427 4.50730 4.53036 4.57398 4.70931 4.73125 4.78697 4.83046 4.88800 4.99438 5.01596 5.06912 5.08910 5.09838 5.19511 5.22157 5.25217 5.40931 5.46885 5.57743 5.68509 5.87080 6.18060 6.22605 6.48912 6.79282 7.01826 7.42711 8.92568 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034376 B = 0.003731 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.335734 B = 7502.382720 C = 7923.642142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.034 1.034 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.267 1.267 11 H -0.283 1.283 12 N -0.685 5.685 13 C 0.069 3.931 14 C -0.075 4.075 15 C -0.103 4.103 16 C -0.128 4.128 17 C 0.258 3.742 18 C -0.113 4.113 19 C -0.102 4.102 20 O -0.385 6.385 21 C 0.007 3.993 22 C 0.017 3.983 23 O -0.397 6.397 24 H 0.021 0.979 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.263 0.737 28 H 0.332 0.668 29 H 0.058 0.942 30 H 0.006 0.994 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.414 -2.516 -20.186 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.017 1.017 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.191 1.191 11 H -0.209 1.209 12 N -0.316 5.316 13 C -0.060 4.060 14 C -0.094 4.094 15 C -0.141 4.141 16 C -0.166 4.166 17 C 0.181 3.819 18 C -0.151 4.151 19 C -0.140 4.140 20 O -0.306 6.306 21 C -0.069 4.069 22 C -0.059 4.059 23 O -0.319 6.319 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.559 -2.632 -20.188 22.491 hybrid contribution 1.000 0.439 1.313 1.708 sum 10.560 -2.193 -18.875 21.739 Atomic orbital electron populations 1.21535 0.97741 0.98851 0.98959 1.18924 0.92782 0.90663 0.87162 1.01695 1.21603 1.31744 1.12684 0.91659 0.92245 1.25768 0.95167 0.95664 1.02126 1.70035 1.37533 1.24079 1.24176 0.85465 0.78896 0.78185 0.78520 1.20045 1.19110 1.20863 1.60695 1.32204 1.33341 1.05375 1.21944 0.99102 0.93599 0.91383 1.21107 0.96285 0.98603 0.93400 1.21414 0.95676 0.99851 0.97184 1.22021 1.02400 0.98520 0.93650 1.23339 0.91327 0.81816 0.85409 1.21780 0.93140 1.01439 0.98714 1.21407 1.01595 0.97986 0.93004 1.89285 1.24358 1.38489 1.78475 1.24611 0.86944 1.02109 0.93264 1.24405 0.87923 0.96543 0.97026 1.88861 1.46482 1.51521 1.45009 0.96035 0.95269 0.92500 0.92828 0.85018 0.92392 0.97566 0.90486 0.92612 0.91809 0.90034 0.91058 0.89551 0.90436 0.90645 0.92188 0.90316 0.85401 0.86213 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 9.19 71.98 0.66 -5.16 16 2 C 0.21 11.31 2.60 44.17 0.11 11.42 16 3 H -0.03 -2.03 7.80 -2.39 -0.02 -2.05 16 4 C -0.54 -30.35 8.59 25.60 0.22 -30.13 16 5 H 0.06 3.26 7.62 -2.91 -0.02 3.24 16 6 C 0.01 0.67 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.68 -30.07 6.30 -495.46 -3.12 -33.19 16 13 C 0.07 2.58 4.94 86.30 0.43 3.01 16 14 C -0.08 -2.20 2.39 -10.80 -0.03 -2.22 16 15 C -0.10 -2.89 4.84 30.60 0.15 -2.75 16 16 C -0.13 -3.05 5.29 30.59 0.16 -2.89 16 17 C 0.26 5.93 1.03 30.57 0.03 5.96 16 18 C -0.11 -2.52 5.34 30.59 0.16 -2.36 16 19 C -0.10 -2.56 5.06 30.60 0.15 -2.40 16 20 O -0.39 -9.03 9.67 -126.22 -1.22 -10.25 16 21 C 0.01 0.10 7.91 72.63 0.57 0.67 16 22 C 0.02 0.24 8.07 72.63 0.59 0.82 16 23 O -0.40 -8.63 10.87 -126.22 -1.37 -10.00 16 24 H 0.02 0.98 7.45 -2.38 -0.02 0.97 16 25 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.33 14.19 6.47 -89.70 -0.58 13.61 16 29 H 0.06 2.20 7.44 -2.39 -0.02 2.18 16 30 H 0.01 0.24 8.05 -2.39 -0.02 0.22 16 31 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.06 1.67 7.69 -2.39 -0.02 1.65 16 33 H 0.06 1.89 6.67 -2.39 -0.02 1.87 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.62 7.69 -2.39 -0.02 1.61 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -64.17 330.39 0.62 -63.55 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.39 Total: 22.53 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 3.67 Total: -24.91 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.88 Total: -86.97 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -2.59 Total: -20.26 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -64.17 0.62 -63.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749301258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.203 kcal (2) G-P(sol) polarization free energy of solvation -64.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds