Wall clock time and date at job start Mon Mar 30 2020 00:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46959 * 2 1 4 4 C 1.36937 * 119.99883 * 264.14820 * 3 2 1 5 5 H 1.07996 * 119.99763 * 189.48211 * 4 3 2 6 6 C 1.38810 * 120.00241 * 9.48651 * 4 3 2 7 7 N 1.31621 * 120.00049 * 26.62497 * 6 4 3 8 8 Si 1.86796 * 119.99987 * 206.62450 * 6 4 3 9 9 H 1.48507 * 109.47129 * 94.98866 * 8 6 4 10 10 H 1.48501 * 109.47303 * 214.98733 * 8 6 4 11 11 H 1.48500 * 109.47469 * 334.99029 * 8 6 4 12 12 C 1.46505 * 120.00025 * 84.14610 * 3 2 1 13 13 C 1.53002 * 109.46608 * 84.15683 * 12 3 2 14 14 C 1.53004 * 109.46193 * 184.18545 * 13 12 3 15 15 C 1.53013 * 109.46048 * 179.83874 * 14 13 12 16 16 C 1.52960 * 109.42914 * 59.80252 * 15 14 13 17 17 C 1.52955 * 109.81542 * 300.29194 * 16 15 14 18 18 C 1.52995 * 109.46455 * 64.14256 * 13 12 3 19 19 O 1.43698 * 109.40839 * 60.39810 * 16 15 14 20 20 C 1.44798 * 104.79360 * 95.49995 * 19 16 15 21 21 C 1.54916 * 101.72288 * 36.06579 * 20 19 16 22 22 O 1.43302 * 109.64905 * 179.71957 * 16 15 14 23 23 H 1.09002 * 109.47587 * 62.24779 * 1 2 3 24 24 H 1.08997 * 109.47328 * 182.25395 * 1 2 3 25 25 H 1.09002 * 109.47354 * 302.25284 * 1 2 3 26 26 H 1.08997 * 109.46660 * 240.00074 * 2 1 3 27 27 H 1.08999 * 109.47176 * 119.99724 * 2 1 3 28 28 H 0.96997 * 119.99870 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47157 * 324.16180 * 12 3 2 30 30 H 1.08996 * 109.46978 * 204.15950 * 12 3 2 31 31 H 1.08995 * 109.46268 * 304.16368 * 13 12 3 32 32 H 1.09005 * 109.47248 * 299.84081 * 14 13 12 33 33 H 1.09002 * 109.46905 * 59.84253 * 14 13 12 34 34 H 1.09002 * 109.47940 * 179.78344 * 15 14 13 35 35 H 1.08996 * 109.48115 * 299.81026 * 15 14 13 36 36 H 1.09001 * 109.47897 * 299.70245 * 17 16 15 37 37 H 1.09003 * 109.48074 * 179.68213 * 17 16 15 38 38 H 1.08993 * 109.46974 * 300.15089 * 18 13 12 39 39 H 1.09003 * 109.46853 * 60.14643 * 18 13 12 40 40 H 1.08998 * 110.97146 * 277.96090 * 20 19 16 41 41 H 1.08996 * 111.01233 * 154.18671 * 20 19 16 42 42 H 1.09006 * 110.69194 * 206.08029 * 21 20 19 43 43 H 1.08999 * 110.69688 * 82.88089 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3605 1.9865 -1.1797 5 1 2.8619 2.9429 -1.1704 6 6 2.0629 1.3707 -2.3876 7 7 1.0493 0.5349 -2.4681 8 14 3.1009 1.7281 -3.8990 9 1 4.1530 0.6888 -4.0340 10 1 2.2369 1.7176 -5.1067 11 1 3.7380 3.0620 -3.7578 12 6 2.1405 2.1150 1.2621 13 6 3.4795 1.7772 1.9208 14 6 3.5625 2.4610 3.2870 15 6 4.8999 2.1198 3.9474 16 6 6.0453 2.6063 3.0580 17 6 5.9626 1.9288 1.6892 18 6 4.6234 2.2699 1.0323 19 8 5.9497 4.0306 2.8927 20 6 6.8322 4.5799 3.9007 21 6 7.9833 3.5432 3.9100 22 8 7.3005 2.2949 3.6754 23 1 -0.3634 0.4785 -0.9094 24 1 -0.3634 -1.0268 0.0404 25 1 -0.3634 0.5484 0.8691 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.8415 0.1043 -3.3121 29 1 1.3259 1.8304 1.9282 30 1 2.0920 3.1861 1.0659 31 1 3.5587 0.6977 2.0496 32 1 3.4857 3.5407 3.1582 33 1 2.7457 2.1114 3.9185 34 1 4.9610 2.6100 4.9191 35 1 4.9753 1.0405 4.0793 36 1 6.0422 0.8488 1.8128 37 1 6.7776 2.2835 1.0582 38 1 4.5621 1.7842 0.0585 39 1 4.5455 3.3497 0.9053 40 1 6.3375 4.6223 4.8711 41 1 7.1960 5.5644 3.6070 42 1 8.4841 3.5324 4.8782 43 1 8.6941 3.7498 3.1099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753710171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:44 Heat of formation + Delta-G solvation = -76.367869 kcal Electronic energy + Delta-G solvation = -22326.957648 eV Core-core repulsion = 19179.630930 eV Total energy + Delta-G solvation = -3147.326718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.76876 -37.51966 -35.33387 -34.89456 -31.73625 -30.62611 -30.39213 -29.08697 -27.82012 -24.94388 -23.38486 -22.87142 -22.37835 -21.26084 -19.87428 -18.98557 -17.11941 -16.72642 -16.44411 -15.46163 -15.13724 -14.87655 -14.21432 -13.85077 -13.61474 -13.40919 -13.25321 -12.84744 -12.80419 -12.46972 -12.09971 -11.96284 -11.78909 -11.63239 -11.48590 -11.02204 -10.84384 -10.76372 -10.68140 -10.40615 -10.29743 -10.20144 -10.06780 -9.93298 -9.71276 -9.52669 -9.20995 -9.08978 -8.25010 -6.74478 -5.67644 -2.95836 3.39518 3.45258 3.53924 3.54316 3.99795 4.47856 4.59178 4.73791 4.83409 4.94195 5.11538 5.20213 5.34373 5.42836 5.47392 5.51513 5.64078 5.73331 5.75494 5.85227 5.90358 6.00558 6.13400 6.21562 6.34515 6.41585 6.54983 6.65867 6.67113 6.76674 6.85109 6.96370 7.11938 7.16889 7.18285 7.21089 7.28721 7.75780 7.85287 8.21470 8.46040 9.35297 9.99413 10.45589 11.36605 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.005450 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.462650 B = 5136.839997 C = 5862.526632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.170 3.830 3 N -0.597 5.597 4 C -0.240 4.240 5 H 0.074 0.926 6 C -0.004 4.004 7 N -0.896 5.896 8 Si 0.887 3.113 9 H -0.291 1.291 10 H -0.295 1.295 11 H -0.281 1.281 12 C 0.157 3.843 13 C -0.106 4.106 14 C -0.107 4.107 15 C -0.130 4.130 16 C 0.259 3.741 17 C -0.118 4.118 18 C -0.100 4.100 19 O -0.360 6.360 20 C 0.013 3.987 21 C 0.020 3.980 22 O -0.383 6.383 23 H 0.095 0.905 24 H 0.016 0.984 25 H 0.009 0.991 26 H 0.080 0.920 27 H 0.001 0.999 28 H 0.250 0.750 29 H 0.030 0.970 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 4.786 13.587 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 N -0.318 5.318 4 C -0.369 4.369 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.542 5.542 8 Si 0.717 3.283 9 H -0.218 1.218 10 H -0.222 1.222 11 H -0.207 1.207 12 C 0.030 3.970 13 C -0.127 4.127 14 C -0.145 4.145 15 C -0.168 4.168 16 C 0.183 3.817 17 C -0.156 4.156 18 C -0.137 4.137 19 O -0.280 6.280 20 C -0.064 4.064 21 C -0.056 4.056 22 O -0.305 6.305 23 H 0.113 0.887 24 H 0.035 0.965 25 H 0.029 0.971 26 H 0.098 0.902 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.936 4.612 13.314 17.241 hybrid contribution 0.641 0.235 -0.610 0.916 sum 10.578 4.848 12.704 17.227 Atomic orbital electron populations 1.22377 0.99481 0.97703 1.01686 1.20645 0.92332 0.84823 0.97715 1.44141 1.75776 1.10420 1.01439 1.19275 1.30260 1.03904 0.83458 0.90860 1.24662 0.97816 1.00593 0.97055 1.70151 1.25324 1.34068 1.24658 0.86473 0.80744 0.77763 0.83279 1.21823 1.22220 1.20658 1.20711 0.92688 0.95681 0.87936 1.21814 0.98385 0.99355 0.93173 1.21484 0.94754 1.01326 0.96922 1.22056 0.94933 1.01893 0.97961 1.23474 0.83742 0.80826 0.93686 1.21893 1.00197 1.00289 0.93172 1.21448 0.90829 1.01376 1.00042 1.89333 1.65454 1.18717 1.54535 1.24326 0.89875 0.98819 0.93393 1.24133 0.95755 0.83490 1.02234 1.88882 1.31534 1.28591 1.81475 0.88659 0.96466 0.97141 0.90192 0.98039 0.94014 0.95127 0.93501 0.92101 0.91559 0.92137 0.92193 0.90654 0.90610 0.91705 0.89177 0.92172 0.91033 0.87722 0.88760 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.78 37.16 0.36 -3.25 16 2 C 0.17 4.13 5.62 -4.04 -0.02 4.11 16 3 N -0.60 -14.52 2.29 -173.24 -0.40 -14.92 16 4 C -0.24 -6.38 8.03 -15.06 -0.12 -6.50 16 5 H 0.07 1.94 7.96 -52.49 -0.42 1.52 16 6 C 0.00 -0.12 4.83 -17.43 -0.08 -0.21 16 7 N -0.90 -25.19 8.63 55.49 0.48 -24.71 16 8 Si 0.89 21.69 29.63 -169.99 -5.04 16.65 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.16 3.23 5.16 -4.04 -0.02 3.21 16 13 C -0.11 -1.88 2.39 -90.62 -0.22 -2.09 16 14 C -0.11 -1.59 5.06 -26.72 -0.14 -1.72 16 15 C -0.13 -1.80 5.29 -26.74 -0.14 -1.94 16 16 C 0.26 3.78 1.03 -26.77 -0.03 3.75 16 17 C -0.12 -1.89 5.34 -26.75 -0.14 -2.03 16 18 C -0.10 -1.81 4.67 -26.73 -0.12 -1.93 16 19 O -0.36 -5.21 9.67 -59.04 -0.57 -5.78 16 20 C 0.01 0.13 7.91 38.17 0.30 0.43 16 21 C 0.02 0.21 8.07 38.17 0.31 0.51 16 22 O -0.38 -5.35 10.87 -59.04 -0.64 -6.00 16 23 H 0.09 2.55 6.09 -51.93 -0.32 2.23 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.01 0.22 8.03 -51.93 -0.42 -0.20 16 26 H 0.08 2.15 6.00 -51.93 -0.31 1.84 16 27 H 0.00 0.03 7.98 -51.93 -0.41 -0.38 16 28 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.03 0.61 8.00 -51.93 -0.42 0.20 16 30 H 0.05 0.98 7.99 -51.93 -0.42 0.57 16 31 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 32 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.90 6.63 -51.93 -0.34 1.55 16 39 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -28.92 327.39 -8.93 -37.85 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.63 Total: -0.36 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.06 Total: -7.66 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.08 Total: -39.63 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.21 Total: -11.78 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.04 Total: 16.65 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.92 -8.93 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753710171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.518 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds