Wall clock time and date at job start Mon Mar 30 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46849 * 110.99134 * 2 1 4 4 C 1.53035 * 109.51639 * 185.85440 * 3 2 1 5 5 C 1.53120 * 109.27409 * 300.81410 * 4 3 2 6 6 C 1.53124 * 109.16227 * 57.65588 * 5 4 3 7 7 C 1.46844 * 111.00155 * 124.20307 * 2 1 3 8 8 H 1.08994 * 109.46297 * 294.16643 * 7 2 1 9 9 C 1.53002 * 109.46138 * 54.14699 * 7 2 1 10 10 C 1.52996 * 109.47120 * 183.26046 * 9 7 2 11 11 O 1.45200 * 109.47071 * 174.57885 * 10 9 7 12 12 C 1.34236 * 116.99823 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99957 * 359.97438 * 12 11 10 14 14 C 1.50693 * 119.99804 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.47015 * 179.97438 * 14 12 11 16 16 C 1.50707 * 109.47065 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99743 * 0.02562 * 16 15 14 18 18 C 1.37869 * 119.99818 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00082 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99999 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47248 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.47115 * 120.00028 * 20 18 16 23 23 H 1.48497 * 109.47556 * 240.00277 * 20 18 16 24 24 H 1.09002 * 109.46960 * 289.72676 * 1 2 3 25 25 H 1.09000 * 109.47632 * 49.72656 * 1 2 3 26 26 H 1.09003 * 109.47198 * 169.73046 * 1 2 3 27 27 H 1.08996 * 109.47129 * 65.83359 * 3 2 1 28 28 H 1.09008 * 109.46239 * 305.86107 * 3 2 1 29 29 H 1.08997 * 109.50841 * 180.87857 * 4 3 2 30 30 H 1.09002 * 109.53772 * 60.77163 * 4 3 2 31 31 H 1.09000 * 109.52691 * 297.75103 * 5 4 3 32 32 H 1.09000 * 109.57748 * 177.59032 * 5 4 3 33 33 H 1.09002 * 109.50311 * 182.40641 * 6 5 4 34 34 H 1.09000 * 109.49975 * 62.28542 * 6 5 4 35 35 H 1.08996 * 109.47215 * 63.25587 * 9 7 2 36 36 H 1.09004 * 109.46659 * 303.25623 * 9 7 2 37 37 H 1.09006 * 109.47316 * 54.57726 * 10 9 7 38 38 H 1.09000 * 109.47261 * 294.58257 * 10 9 7 39 39 H 1.08998 * 109.47671 * 299.99708 * 14 12 11 40 40 H 1.09002 * 109.47554 * 60.00181 * 14 12 11 41 41 H 1.09004 * 109.46959 * 299.99485 * 15 14 12 42 42 H 1.08997 * 109.47175 * 60.00346 * 15 14 12 43 43 H 0.96999 * 119.99440 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3710 0.0000 4 6 3.5178 1.3343 -0.1471 5 6 4.1187 0.5372 1.0139 6 6 3.5181 -0.8713 1.0206 7 6 1.9952 -0.7706 1.1338 8 1 1.7326 -0.2705 2.0659 9 6 1.3891 -2.1754 1.1206 10 6 1.8740 -2.9516 2.3466 11 8 1.2005 -4.2367 2.4033 12 6 1.5157 -5.0452 3.4275 13 8 2.3278 -4.6910 4.2491 14 6 0.8575 -6.3951 3.5519 15 6 1.3900 -7.1094 4.7958 16 6 0.7323 -8.4597 4.9198 17 1 0.0073 -8.7767 4.1848 18 6 1.0568 -9.2905 5.9711 19 7 1.9408 -8.9050 6.8653 20 14 0.2411 -10.9639 6.1253 21 1 -0.7083 -11.1574 4.9999 22 1 1.2784 -12.0259 6.0855 23 1 -0.4950 -11.0390 7.4128 24 1 -0.3633 0.3469 0.9674 25 1 -0.3634 0.6643 -0.7841 26 1 -0.3634 -1.0112 -0.1832 27 1 1.7324 1.8609 0.9376 28 1 1.5630 1.9258 -0.8330 29 1 3.9096 2.3513 -0.1314 30 1 3.7815 0.8572 -1.0911 31 1 3.8888 1.0356 1.9556 32 1 5.1998 0.4715 0.8910 33 1 3.9100 -1.4301 1.8705 34 1 3.7812 -1.3834 0.0950 35 1 1.6991 -2.6963 0.2147 36 1 0.3018 -2.1021 1.1436 37 1 1.6488 -2.3832 3.2490 38 1 2.9503 -3.1083 2.2752 39 1 -0.2213 -6.2667 3.6402 40 1 1.0812 -6.9914 2.6673 41 1 2.4688 -7.2380 4.7070 42 1 1.1667 -6.5134 5.6806 43 1 2.1688 -9.4895 7.6051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:08 Heat of formation + Delta-G solvation = -130.908235 kcal Electronic energy + Delta-G solvation = -20452.457556 eV Core-core repulsion = 17302.765791 eV Total energy + Delta-G solvation = -3149.691765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51663 -40.31906 -37.76006 -35.65016 -34.67433 -34.30855 -33.11008 -29.99831 -28.07128 -27.48555 -25.40685 -24.11795 -23.46260 -21.90984 -21.42543 -20.65607 -19.08627 -18.19531 -17.75902 -17.15919 -16.62942 -16.45170 -16.09955 -15.96703 -15.35285 -15.16949 -14.87406 -14.39712 -14.23976 -14.12056 -13.88475 -13.36884 -13.29001 -13.16710 -12.87521 -12.74341 -12.61655 -12.51929 -12.46037 -12.03773 -12.00839 -11.75159 -11.64703 -11.59881 -11.47474 -11.30888 -11.17670 -11.06875 -10.58938 -9.31464 -8.20345 -6.34063 1.23117 1.43428 1.44551 1.57828 1.67775 2.43046 2.89504 3.13592 3.67307 3.69827 3.90028 3.92885 4.00911 4.09296 4.18076 4.27847 4.30541 4.37882 4.45437 4.51803 4.53624 4.57168 4.64618 4.73168 4.82199 4.88615 4.94793 5.00579 5.04456 5.06053 5.10547 5.21216 5.25714 5.40393 5.45252 5.48250 5.54954 5.80587 6.08117 6.13025 6.13430 6.78817 6.86424 7.36297 8.92622 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048952 B = 0.002716 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.855605 B =10305.281372 C =10711.243117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.120 4.120 7 C 0.094 3.906 8 H 0.038 0.962 9 C -0.103 4.103 10 C 0.061 3.939 11 O -0.356 6.356 12 C 0.465 3.535 13 O -0.545 6.545 14 C -0.094 4.094 15 C 0.037 3.963 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.975 3.025 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.024 0.976 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.116 0.884 41 H -0.010 1.010 42 H -0.011 1.011 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 20.916 -16.863 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.270 5.270 3 C -0.074 4.074 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.158 4.158 7 C -0.015 4.015 8 H 0.056 0.944 9 C -0.141 4.141 10 C -0.013 4.013 11 O -0.273 6.273 12 C 0.310 3.690 13 O -0.435 6.435 14 C -0.132 4.132 15 C 0.000 4.000 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.799 3.201 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.930 20.801 -16.931 26.837 hybrid contribution -0.142 -0.298 1.552 1.587 sum -1.072 20.504 -15.379 25.653 Atomic orbital electron populations 1.22498 0.86609 1.03224 1.00688 1.61923 1.08361 1.14159 1.42519 1.22184 0.96097 0.88289 1.00820 1.21587 0.94018 1.00783 0.98815 1.21598 1.00533 0.95034 0.98839 1.21746 0.93412 0.98129 1.02467 1.21453 0.95428 0.92542 0.92029 0.94440 1.21568 1.01988 0.94125 0.96401 1.23185 0.97040 0.81053 1.00000 1.86503 1.64195 1.29262 1.47375 1.24531 0.79447 0.87492 0.77551 1.90625 1.34365 1.75797 1.42743 1.21519 1.01939 0.87522 1.02173 1.18812 0.95162 0.94447 0.91572 1.21676 1.24515 1.01320 1.10494 0.90392 1.26115 0.95695 1.03241 0.95279 1.70171 1.34251 1.38832 1.14394 0.85251 0.78345 0.78012 0.78506 1.17648 1.20615 1.20612 0.95712 0.90106 0.90758 0.95181 0.89441 0.90068 0.91294 0.92435 0.90928 0.91912 0.90922 0.89707 0.89871 0.92070 0.91350 0.86570 0.86550 0.99182 0.99209 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.89 127.69 1.14 1.38 16 2 N -0.54 -8.95 4.75 -897.18 -4.26 -13.21 16 3 C 0.05 0.73 5.46 86.32 0.47 1.20 16 4 C -0.11 -1.44 6.09 30.65 0.19 -1.25 16 5 C -0.12 -1.80 6.00 30.68 0.18 -1.61 16 6 C -0.12 -2.12 5.07 30.65 0.16 -1.97 16 7 C 0.09 1.73 1.92 44.94 0.09 1.81 16 8 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 9 C -0.10 -2.10 4.77 30.59 0.15 -1.96 16 10 C 0.06 1.66 5.04 71.98 0.36 2.02 16 11 O -0.36 -11.64 10.22 -51.48 -0.53 -12.17 16 12 C 0.46 18.66 7.96 71.23 0.57 19.23 16 13 O -0.55 -26.00 15.73 21.95 0.35 -25.66 16 14 C -0.09 -3.84 5.75 29.85 0.17 -3.67 16 15 C 0.04 2.04 4.26 29.85 0.13 2.17 16 16 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 17 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 18 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 19 N -0.94 -58.53 13.29 21.45 0.28 -58.25 16 20 Si 0.98 43.86 29.54 68.60 2.03 45.88 16 21 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 H 0.02 0.36 8.12 -2.39 -0.02 0.34 16 25 H 0.08 0.91 7.98 -2.39 -0.02 0.89 16 26 H 0.07 1.06 6.52 -2.39 -0.02 1.05 16 27 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.09 0.97 8.01 -2.38 -0.02 0.95 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.21 6.68 -2.39 -0.02 1.19 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.61 6.27 -2.39 -0.01 1.60 16 37 H 0.06 1.70 8.13 -2.38 -0.02 1.68 16 38 H 0.07 1.88 6.81 -2.39 -0.02 1.86 16 39 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 40 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 41 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 42 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -69.61 342.82 3.12 -66.49 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.96 Total: 9.61 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.29 Total: -12.70 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -3.97 Total: -71.46 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.18 Total: -37.83 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.61 3.12 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.416 kcal (2) G-P(sol) polarization free energy of solvation -69.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds