Wall clock time and date at job start Mon Mar 30 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 111.00684 * 2 1 4 4 C 1.53029 * 109.52518 * 174.15737 * 3 2 1 5 5 C 1.53120 * 109.27602 * 59.18708 * 4 3 2 6 6 C 1.53122 * 109.15939 * 302.33745 * 5 4 3 7 7 C 1.46851 * 110.99615 * 235.78823 * 2 1 3 8 8 H 1.08999 * 109.46199 * 65.84084 * 7 2 1 9 9 C 1.53000 * 109.46612 * 305.85976 * 7 2 1 10 10 C 1.52996 * 109.47034 * 175.56038 * 9 7 2 11 11 O 1.45204 * 109.47113 * 185.33921 * 10 9 7 12 12 C 1.34225 * 117.00184 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99948 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.46802 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46837 * 179.97438 * 15 14 12 17 17 H 1.07993 * 119.99958 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99891 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00197 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99970 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47219 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47357 * 120.00067 * 20 18 16 23 23 H 1.48506 * 109.47013 * 240.00197 * 20 18 16 24 24 H 1.08994 * 109.47362 * 190.61243 * 1 2 3 25 25 H 1.08998 * 109.46765 * 310.61468 * 1 2 3 26 26 H 1.09004 * 109.47094 * 70.61338 * 1 2 3 27 27 H 1.09001 * 109.46180 * 294.18435 * 3 2 1 28 28 H 1.09006 * 109.45474 * 54.15240 * 3 2 1 29 29 H 1.09008 * 109.50152 * 179.11878 * 4 3 2 30 30 H 1.08996 * 109.50768 * 299.23810 * 4 3 2 31 31 H 1.08997 * 109.52896 * 62.24613 * 5 4 3 32 32 H 1.08999 * 109.52375 * 182.37667 * 5 4 3 33 33 H 1.08998 * 109.50499 * 297.72122 * 6 5 4 34 34 H 1.08999 * 109.50182 * 177.59467 * 6 5 4 35 35 H 1.09001 * 109.47041 * 295.55739 * 9 7 2 36 36 H 1.08990 * 109.46869 * 55.55719 * 9 7 2 37 37 H 1.09000 * 109.47011 * 305.33928 * 10 9 7 38 38 H 1.08999 * 109.47251 * 65.34280 * 10 9 7 39 39 H 1.08994 * 109.46735 * 299.99517 * 14 12 11 40 40 H 1.08993 * 109.47390 * 59.99669 * 14 12 11 41 41 H 1.08998 * 109.46983 * 299.99824 * 15 14 12 42 42 H 1.09002 * 109.47127 * 59.99990 * 15 14 12 43 43 H 0.96997 * 120.00603 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3708 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 3.5181 -0.8716 -1.0209 7 6 1.9952 -0.7709 -1.1338 8 1 1.7326 -0.2708 -2.0660 9 6 1.3889 -2.1756 -1.1205 10 6 1.8503 -2.9419 -2.3617 11 8 1.1769 -4.2272 -2.4151 12 6 1.4733 -5.0279 -3.4507 13 8 2.2688 -4.6667 -4.2854 14 6 0.8130 -6.3771 -3.5732 15 6 1.3218 -7.0814 -4.8325 16 6 0.6620 -8.4308 -4.9546 17 1 -0.0493 -8.7535 -4.2089 18 6 0.9658 -9.2530 -6.0189 19 7 1.8317 -8.8598 -6.9273 20 14 0.1474 -10.9253 -6.1707 21 1 -0.7792 -11.1284 -5.0282 22 1 -0.6140 -10.9901 -7.4439 23 1 1.1856 -11.9872 -6.1601 24 1 -0.3634 -1.0100 0.1892 25 1 -0.3633 0.6690 0.7801 26 1 -0.3633 0.3411 -0.9694 27 1 1.7325 1.8608 -0.9375 28 1 1.5636 1.9256 0.8331 29 1 3.9100 2.3511 0.1311 30 1 3.7814 0.8566 1.0907 31 1 3.8888 1.0353 -1.9560 32 1 5.1999 0.4721 -0.8911 33 1 3.7813 -1.3838 -0.0954 34 1 3.9098 -1.4304 -1.8708 35 1 1.7159 -2.7039 -0.2249 36 1 0.3015 -2.1019 -1.1223 37 1 1.6069 -2.3668 -3.2551 38 1 2.9279 -3.0982 -2.3125 39 1 1.0530 -6.9798 -2.6973 40 1 -0.2672 -6.2482 -3.6407 41 1 1.0815 -6.4785 -5.7082 42 1 2.4021 -7.2103 -4.7654 43 1 2.0457 -9.4383 -7.6759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:11 Heat of formation + Delta-G solvation = -111.878740 kcal Electronic energy + Delta-G solvation = -20449.945166 eV Core-core repulsion = 17301.078582 eV Total energy + Delta-G solvation = -3148.866584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07000 -39.47382 -36.26488 -33.96867 -33.58519 -33.42722 -31.13330 -29.07144 -26.94420 -26.04681 -24.30347 -23.07009 -21.98424 -21.07396 -20.03059 -19.68348 -17.34854 -16.47333 -16.35072 -15.88028 -15.74449 -15.02954 -14.95795 -14.50105 -14.44684 -14.44171 -13.76118 -13.31681 -12.84429 -12.74649 -12.48291 -12.43755 -12.19377 -11.99334 -11.74576 -11.56275 -11.22556 -11.13885 -10.99768 -10.97195 -10.71365 -10.61315 -10.48483 -10.17921 -10.03026 -9.89581 -9.53298 -9.15556 -8.62672 -8.37775 -6.01278 -4.06038 2.85582 3.03606 3.31034 3.38361 3.42137 3.64351 4.42792 4.44636 4.50768 4.58671 4.73169 4.95031 5.01049 5.04621 5.04968 5.17755 5.21928 5.29844 5.34215 5.35950 5.41645 5.44676 5.59591 5.63097 5.69040 5.70719 5.80870 5.84993 5.96475 5.99044 6.12163 6.14123 6.22239 6.67446 6.76244 6.79872 6.97391 7.67409 7.74234 7.98618 8.27147 8.43640 9.01430 9.58050 11.09826 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048980 B = 0.002715 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.530270 B =10311.904602 C =10712.792891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.537 5.537 3 C 0.056 3.944 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.118 4.118 7 C 0.090 3.910 8 H 0.044 0.956 9 C -0.115 4.115 10 C 0.065 3.935 11 O -0.367 6.367 12 C 0.456 3.544 13 O -0.507 6.507 14 C -0.103 4.103 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.025 0.975 42 H 0.026 0.974 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 20.678 15.223 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.156 4.156 7 C -0.018 4.018 8 H 0.062 0.938 9 C -0.153 4.153 10 C -0.009 4.009 11 O -0.285 6.285 12 C 0.300 3.700 13 O -0.393 6.393 14 C -0.141 4.141 15 C -0.005 4.005 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.666 20.546 15.242 25.591 hybrid contribution -0.580 -0.357 -1.031 1.235 sum 0.086 20.189 14.211 24.690 Atomic orbital electron populations 1.22452 0.87225 1.02943 1.00254 1.61896 1.07690 1.13397 1.43218 1.22101 0.95743 0.88989 1.00374 1.21597 0.94352 1.00084 0.99498 1.21592 1.00131 0.95848 0.98459 1.21747 0.93570 0.97258 1.03035 1.21540 0.95227 0.93254 0.91807 0.93835 1.21636 1.01777 0.93978 0.97913 1.22898 0.97103 0.82480 0.98452 1.86539 1.64987 1.28583 1.48358 1.24765 0.80150 0.87382 0.77729 1.90630 1.33267 1.74603 1.40847 1.21756 1.00846 0.87226 1.04251 1.19025 0.97282 0.94323 0.89857 1.21198 1.25255 1.01077 1.09010 0.92243 1.25029 0.95173 0.98491 0.95705 1.70001 1.33304 1.37035 1.12486 0.86486 0.79290 0.83895 0.78014 1.19640 1.20975 1.20964 0.90580 0.91491 0.95528 0.95010 0.90726 0.91622 0.90999 0.92265 0.91562 0.90678 0.91000 0.89917 0.90437 0.91813 0.91282 0.88951 0.89000 0.95614 0.95585 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.89 60.06 0.53 0.69 16 2 N -0.54 -4.85 4.75 -234.93 -1.11 -5.97 16 3 C 0.06 0.43 5.46 -3.84 -0.02 0.41 16 4 C -0.12 -0.84 6.09 -26.65 -0.16 -1.00 16 5 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 6 C -0.12 -1.09 5.10 -26.64 -0.14 -1.22 16 7 C 0.09 0.87 1.90 -67.72 -0.13 0.74 16 8 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 9 C -0.12 -1.24 4.79 -26.73 -0.13 -1.37 16 10 C 0.07 0.90 5.07 37.16 0.19 1.09 16 11 O -0.37 -6.18 10.22 -39.25 -0.40 -6.58 16 12 C 0.46 9.18 7.96 36.01 0.29 9.47 16 13 O -0.51 -11.75 15.73 -18.75 -0.29 -12.05 16 14 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 15 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 16 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 20 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H 0.08 0.61 6.51 -51.93 -0.34 0.27 16 25 H 0.07 0.45 7.98 -51.93 -0.41 0.04 16 26 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 27 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.50 8.01 -51.93 -0.42 0.09 16 29 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.69 6.71 -51.93 -0.35 0.34 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.81 6.21 -51.93 -0.32 0.49 16 37 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 38 H 0.07 0.95 6.83 -51.93 -0.35 0.59 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 40 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 41 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 42 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -31.98 342.86 -8.99 -40.97 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -7.65 Total: -4.15 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.42 Total: -7.47 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: -0.38 Total: -32.40 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.70 Total: -18.63 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.98 -8.99 -40.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.908 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds