Wall clock time and date at job start Mon Mar 30 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46845 * 111.00684 * 2 1 4 4 C 1.53029 * 109.52518 * 174.15737 * 3 2 1 5 5 C 1.53120 * 109.27602 * 59.18708 * 4 3 2 6 6 C 1.53122 * 109.15939 * 302.33745 * 5 4 3 7 7 C 1.46851 * 110.99615 * 235.78823 * 2 1 3 8 8 H 1.08999 * 109.46199 * 65.84084 * 7 2 1 9 9 C 1.53000 * 109.46612 * 305.85976 * 7 2 1 10 10 C 1.52996 * 109.47034 * 175.56038 * 9 7 2 11 11 O 1.45204 * 109.47113 * 185.33921 * 10 9 7 12 12 C 1.34225 * 117.00184 * 180.02562 * 11 10 9 13 13 O 1.20829 * 120.00226 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99948 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.46802 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46837 * 179.97438 * 15 14 12 17 17 H 1.07993 * 119.99958 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99891 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00197 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99970 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47219 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47357 * 120.00067 * 20 18 16 23 23 H 1.48506 * 109.47013 * 240.00197 * 20 18 16 24 24 H 1.08994 * 109.47362 * 190.61243 * 1 2 3 25 25 H 1.08998 * 109.46765 * 310.61468 * 1 2 3 26 26 H 1.09004 * 109.47094 * 70.61338 * 1 2 3 27 27 H 1.09001 * 109.46180 * 294.18435 * 3 2 1 28 28 H 1.09006 * 109.45474 * 54.15240 * 3 2 1 29 29 H 1.09008 * 109.50152 * 179.11878 * 4 3 2 30 30 H 1.08996 * 109.50768 * 299.23810 * 4 3 2 31 31 H 1.08997 * 109.52896 * 62.24613 * 5 4 3 32 32 H 1.08999 * 109.52375 * 182.37667 * 5 4 3 33 33 H 1.08998 * 109.50499 * 297.72122 * 6 5 4 34 34 H 1.08999 * 109.50182 * 177.59467 * 6 5 4 35 35 H 1.09001 * 109.47041 * 295.55739 * 9 7 2 36 36 H 1.08990 * 109.46869 * 55.55719 * 9 7 2 37 37 H 1.09000 * 109.47011 * 305.33928 * 10 9 7 38 38 H 1.08999 * 109.47251 * 65.34280 * 10 9 7 39 39 H 1.08994 * 109.46735 * 299.99517 * 14 12 11 40 40 H 1.08993 * 109.47390 * 59.99669 * 14 12 11 41 41 H 1.08998 * 109.46983 * 299.99824 * 15 14 12 42 42 H 1.09002 * 109.47127 * 59.99990 * 15 14 12 43 43 H 0.96997 * 120.00603 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3708 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 3.5181 -0.8716 -1.0209 7 6 1.9952 -0.7709 -1.1338 8 1 1.7326 -0.2708 -2.0660 9 6 1.3889 -2.1756 -1.1205 10 6 1.8503 -2.9419 -2.3617 11 8 1.1769 -4.2272 -2.4151 12 6 1.4733 -5.0279 -3.4507 13 8 2.2688 -4.6667 -4.2854 14 6 0.8130 -6.3771 -3.5732 15 6 1.3218 -7.0814 -4.8325 16 6 0.6620 -8.4308 -4.9546 17 1 -0.0493 -8.7535 -4.2089 18 6 0.9658 -9.2530 -6.0189 19 7 1.8317 -8.8598 -6.9273 20 14 0.1474 -10.9253 -6.1707 21 1 -0.7792 -11.1284 -5.0282 22 1 -0.6140 -10.9901 -7.4439 23 1 1.1856 -11.9872 -6.1601 24 1 -0.3634 -1.0100 0.1892 25 1 -0.3633 0.6690 0.7801 26 1 -0.3633 0.3411 -0.9694 27 1 1.7325 1.8608 -0.9375 28 1 1.5636 1.9256 0.8331 29 1 3.9100 2.3511 0.1311 30 1 3.7814 0.8566 1.0907 31 1 3.8888 1.0353 -1.9560 32 1 5.1999 0.4721 -0.8911 33 1 3.7813 -1.3838 -0.0954 34 1 3.9098 -1.4304 -1.8708 35 1 1.7159 -2.7039 -0.2249 36 1 0.3015 -2.1019 -1.1223 37 1 1.6069 -2.3668 -3.2551 38 1 2.9279 -3.0982 -2.3125 39 1 1.0530 -6.9798 -2.6973 40 1 -0.2672 -6.2482 -3.6407 41 1 1.0815 -6.4785 -5.7082 42 1 2.4021 -7.2103 -4.7654 43 1 2.0457 -9.4383 -7.6759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:10 Heat of formation + Delta-G solvation = -130.859305 kcal Electronic energy + Delta-G solvation = -20450.768225 eV Core-core repulsion = 17301.078582 eV Total energy + Delta-G solvation = -3149.689643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51743 -40.31813 -37.76084 -35.65087 -34.67724 -34.30303 -33.11114 -30.00489 -28.07141 -27.48861 -25.39902 -24.11257 -23.46916 -21.91092 -21.42666 -20.65703 -19.08631 -18.19573 -17.75999 -17.16114 -16.62933 -16.45219 -16.08963 -15.97637 -15.35309 -15.16948 -14.87524 -14.39858 -14.23908 -14.11968 -13.88708 -13.36591 -13.29117 -13.16717 -12.87500 -12.74111 -12.61723 -12.52123 -12.46073 -12.03664 -12.00861 -11.75186 -11.64714 -11.60052 -11.47621 -11.30995 -11.17740 -11.06657 -10.58998 -9.31441 -8.20319 -6.34057 1.23118 1.43417 1.44543 1.57820 1.67688 2.43028 2.89410 3.13592 3.67332 3.69840 3.89955 3.92959 4.00934 4.09037 4.18202 4.27787 4.30588 4.37925 4.45440 4.51815 4.53500 4.57100 4.64636 4.73269 4.82161 4.88573 4.94728 5.00525 5.04483 5.06130 5.10794 5.21183 5.25796 5.40404 5.45300 5.48271 5.54944 5.80573 6.08022 6.13049 6.13429 6.78815 6.86434 7.36283 8.92648 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048980 B = 0.002715 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.530270 B =10311.904602 C =10712.792891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.545 5.545 3 C 0.054 3.946 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.119 4.119 7 C 0.094 3.906 8 H 0.037 0.963 9 C -0.103 4.103 10 C 0.061 3.939 11 O -0.356 6.356 12 C 0.464 3.536 13 O -0.545 6.545 14 C -0.094 4.094 15 C 0.037 3.963 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.975 3.025 21 H -0.253 1.253 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.116 0.884 41 H -0.011 1.011 42 H -0.010 1.010 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 20.787 17.046 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.270 5.270 3 C -0.074 4.074 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.015 4.015 8 H 0.055 0.945 9 C -0.141 4.141 10 C -0.013 4.013 11 O -0.273 6.273 12 C 0.310 3.690 13 O -0.435 6.435 14 C -0.131 4.131 15 C 0.000 4.000 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.799 3.201 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.629 20.677 17.108 26.844 hybrid contribution -0.158 -0.291 -1.562 1.597 sum -0.787 20.386 15.546 25.649 Atomic orbital electron populations 1.22498 0.86616 1.03233 1.00673 1.61919 1.08351 1.14162 1.42530 1.22184 0.96109 0.88288 1.00812 1.21589 0.94009 1.00786 0.98823 1.21597 1.00541 0.95039 0.98830 1.21743 0.93385 0.98121 1.02476 1.21457 0.95444 0.92540 0.92020 0.94463 1.21570 1.02136 0.94208 0.96188 1.23183 0.97054 0.81075 0.99960 1.86501 1.64784 1.29536 1.46506 1.24532 0.79246 0.87504 0.77743 1.90625 1.35020 1.75447 1.42446 1.21519 1.01956 0.87592 1.02078 1.18810 0.95217 0.94488 0.91476 1.21675 1.25372 1.01555 1.09416 0.90392 1.26115 0.95729 1.03204 0.95271 1.70163 1.35146 1.38964 1.13371 0.85252 0.78317 0.78020 0.78533 1.17648 1.20613 1.20612 0.90750 0.90103 0.95721 0.95197 0.89443 0.90066 0.91282 0.92446 0.90913 0.90906 0.91908 0.89706 0.89849 0.92077 0.91361 0.86546 0.86577 0.99213 0.99183 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.89 127.69 1.14 1.38 16 2 N -0.54 -8.96 4.75 -897.17 -4.26 -13.22 16 3 C 0.05 0.73 5.46 86.32 0.47 1.20 16 4 C -0.11 -1.43 6.09 30.64 0.19 -1.25 16 5 C -0.12 -1.79 6.00 30.68 0.18 -1.61 16 6 C -0.12 -2.11 5.10 30.65 0.16 -1.96 16 7 C 0.09 1.73 1.90 44.94 0.09 1.81 16 8 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 9 C -0.10 -2.11 4.79 30.59 0.15 -1.96 16 10 C 0.06 1.66 5.07 71.98 0.36 2.02 16 11 O -0.36 -11.64 10.22 -51.37 -0.53 -12.17 16 12 C 0.46 18.66 7.96 71.24 0.57 19.23 16 13 O -0.55 -26.01 15.73 21.96 0.35 -25.66 16 14 C -0.09 -3.84 5.75 29.85 0.17 -3.66 16 15 C 0.04 2.04 4.26 29.85 0.13 2.17 16 16 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 17 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 18 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 19 N -0.94 -58.53 13.29 21.45 0.28 -58.24 16 20 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 21 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H 0.07 1.07 6.51 -2.39 -0.02 1.05 16 25 H 0.08 0.91 7.98 -2.39 -0.02 0.89 16 26 H 0.02 0.36 8.12 -2.38 -0.02 0.34 16 27 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.09 0.97 8.01 -2.38 -0.02 0.95 16 29 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.20 6.71 -2.39 -0.02 1.19 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.62 6.21 -2.39 -0.01 1.61 16 37 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 38 H 0.07 1.87 6.83 -2.39 -0.02 1.86 16 39 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 40 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 41 H -0.01 -0.65 8.10 -2.39 -0.02 -0.66 16 42 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -69.61 342.86 3.12 -66.49 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.95 Total: 9.59 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: 4.29 Total: -12.68 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -3.97 Total: -71.46 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.18 Total: -37.83 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -69.61 3.12 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.365 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds