Wall clock time and date at job start Mon Mar 30 2020 01:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47267 * 2 1 4 4 C 1.46495 * 120.00361 * 269.99948 * 3 2 1 5 5 C 1.50697 * 109.47341 * 269.99883 * 4 3 2 6 6 H 1.07999 * 120.00091 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00095 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99935 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46790 * 90.00473 * 9 7 5 11 11 H 1.48497 * 109.47296 * 210.00481 * 9 7 5 12 12 H 1.48496 * 109.47513 * 330.00831 * 9 7 5 13 13 C 1.34780 * 119.99591 * 90.00427 * 3 2 1 14 14 O 1.21507 * 119.99958 * 180.02562 * 13 3 2 15 15 O 1.34638 * 119.99947 * 359.97438 * 13 3 2 16 16 C 1.45199 * 116.99720 * 180.02562 * 15 13 3 17 17 C 1.53002 * 109.47173 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.46817 * 65.00158 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99964 * 17 16 15 23 23 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46876 * 300.00137 * 1 2 3 25 25 H 1.09006 * 109.47113 * 59.99452 * 1 2 3 26 26 H 1.09003 * 109.47226 * 240.00489 * 2 1 3 27 27 H 1.08996 * 109.47224 * 120.00560 * 2 1 3 28 28 H 1.09000 * 109.46748 * 30.00141 * 4 3 2 29 29 H 1.09001 * 109.47364 * 150.00102 * 4 3 2 30 30 H 0.97000 * 120.00067 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.47080 * 60.00604 * 16 15 13 32 32 H 1.08997 * 109.47529 * 300.00493 * 16 15 13 33 33 H 1.09002 * 109.47070 * 305.00338 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6859 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1492 2.3898 -2.8779 8 7 3.3492 3.1259 -3.6179 9 14 5.9136 2.0969 -3.4167 10 1 5.9776 0.8756 -4.2591 11 1 6.3923 3.2641 -4.2000 12 1 6.7737 1.9179 -2.2195 13 6 2.2431 2.0165 1.1673 14 8 2.6477 3.1622 1.1674 15 8 2.0182 1.3818 2.3332 16 6 2.2814 2.1275 3.5510 17 6 1.9709 1.2487 4.7643 18 6 2.9392 0.0646 4.7975 19 6 2.6292 -0.8139 6.0112 20 6 2.7868 0.0100 7.2908 21 6 1.8185 1.1941 7.2576 22 6 2.1282 2.0722 6.0442 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5818 1.6878 -2.0283 29 1 2.0957 3.1411 -1.1383 30 1 3.6752 3.5164 -4.4438 31 1 1.6518 3.0171 3.5756 32 1 3.3300 2.4238 3.5762 33 1 0.9478 0.8795 4.6933 34 1 2.8273 -0.5221 3.8858 35 1 3.9623 0.4338 4.8686 36 1 3.3193 -1.6572 6.0351 37 1 1.6061 -1.1831 5.9405 38 1 3.8100 0.3792 7.3615 39 1 2.5655 -0.6158 8.1554 40 1 1.9305 1.7807 8.1694 41 1 0.7954 0.8248 7.1869 42 1 3.1512 2.4414 6.1153 43 1 1.4383 2.9158 6.0205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820790308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:52 Heat of formation + Delta-G solvation = -116.193734 kcal Electronic energy + Delta-G solvation = -21326.714435 eV Core-core repulsion = 18177.660738 eV Total energy + Delta-G solvation = -3149.053697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83244 -38.62234 -36.27787 -35.01800 -32.75863 -31.96685 -30.87375 -30.06788 -27.35206 -25.75499 -23.11923 -22.89924 -22.62010 -21.26265 -19.94546 -19.45931 -17.16540 -16.52087 -16.24715 -15.83391 -15.39777 -14.73478 -14.39073 -14.31782 -14.14236 -13.92785 -13.22645 -13.06963 -12.81079 -12.46267 -12.31387 -12.13472 -11.97975 -11.83908 -11.51726 -11.26700 -11.17339 -11.11223 -10.89915 -10.67834 -10.57982 -10.50414 -10.27726 -10.25113 -10.13115 -9.95138 -9.66219 -9.48000 -8.43557 -7.72321 -6.04546 -4.09219 2.94454 3.31115 3.37523 3.42823 3.72747 4.39430 4.48184 4.54985 4.60543 4.78680 4.99916 5.12874 5.24311 5.29788 5.34247 5.35000 5.38147 5.49773 5.54714 5.61974 5.71449 5.75941 5.78400 5.85787 5.88387 5.99297 6.00835 6.03326 6.13975 6.20356 6.28302 6.31398 6.35836 6.60606 6.78049 7.15296 7.45878 7.52352 7.91933 8.21648 8.41156 8.91038 9.23376 9.56338 11.03533 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.004104 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.547668 B = 6821.251590 C = 7134.678352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.577 5.577 4 C 0.260 3.740 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.639 3.361 14 O -0.573 6.573 15 O -0.377 6.377 16 C 0.091 3.909 17 C -0.084 4.084 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.113 4.113 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 -7.791 18.512 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.316 5.316 4 C 0.142 3.858 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.392 3.608 14 O -0.462 6.462 15 O -0.292 6.292 16 C 0.016 3.984 17 C -0.103 4.103 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.151 4.151 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.694 -7.310 18.383 20.332 hybrid contribution 1.009 0.009 -0.433 1.098 sum -3.685 -7.300 17.949 19.725 Atomic orbital electron populations 1.22174 0.96845 1.01274 1.02131 1.21362 0.93515 0.83448 1.02715 1.47306 1.66104 1.13878 1.04351 1.19338 0.96509 0.93507 0.76450 1.21467 0.96923 1.32018 1.06363 0.92336 1.24924 0.97953 0.94847 0.96313 1.69929 1.35737 1.33372 1.14337 0.86472 0.84555 0.77679 0.78577 1.20589 1.21064 1.19898 1.18157 0.78046 0.83555 0.80995 1.90946 1.51176 1.17464 1.86646 1.86183 1.82619 1.46213 1.14156 1.22836 1.01400 0.93779 0.80414 1.21185 1.00918 0.95811 0.92350 1.21567 0.98897 0.96315 0.98385 1.21539 1.01634 0.97930 0.94534 1.21562 0.99719 0.96930 0.97648 1.21487 0.99596 0.96697 0.97596 1.21496 1.02272 0.97896 0.93417 0.92278 0.92943 0.92346 0.90081 0.91224 0.94292 0.93693 0.92665 0.91771 0.91668 0.90240 0.91013 0.92011 0.92096 0.92027 0.92021 0.92289 0.91982 0.91940 0.91568 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.11 2.00 6.13 -4.04 -0.02 1.98 16 3 N -0.58 -13.02 2.46 -180.87 -0.44 -13.47 16 4 C 0.26 6.92 5.16 -5.20 -0.03 6.89 16 5 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.64 14.60 8.39 54.06 0.45 15.05 16 14 O -0.57 -15.19 15.71 -19.28 -0.30 -15.49 16 15 O -0.38 -6.92 8.59 -40.32 -0.35 -7.26 16 16 C 0.09 1.38 4.85 37.16 0.18 1.56 16 17 C -0.08 -0.95 2.44 -90.62 -0.22 -1.17 16 18 C -0.11 -1.26 5.10 -26.73 -0.14 -1.39 16 19 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.12 -0.93 5.92 -26.76 -0.16 -1.08 16 22 C -0.11 -1.06 5.20 -26.76 -0.14 -1.20 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 27 H 0.07 1.12 7.37 -51.93 -0.38 0.74 16 28 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 29 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.88 7.82 -51.93 -0.41 0.48 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -32.21 348.02 -8.46 -40.67 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.90 Total: -3.12 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.43 Total: 2.34 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.29 Total: -39.37 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.65 Total: -22.76 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.21 -8.46 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820790308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.524 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds