Wall clock time and date at job start Mon Mar 30 2020 01:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47267 * 2 1 4 4 C 1.46495 * 120.00361 * 269.99948 * 3 2 1 5 5 C 1.50697 * 109.47341 * 269.99883 * 4 3 2 6 6 H 1.07999 * 120.00091 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00095 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99851 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99935 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46790 * 90.00473 * 9 7 5 11 11 H 1.48497 * 109.47296 * 210.00481 * 9 7 5 12 12 H 1.48496 * 109.47513 * 330.00831 * 9 7 5 13 13 C 1.34780 * 119.99591 * 90.00427 * 3 2 1 14 14 O 1.21507 * 119.99958 * 180.02562 * 13 3 2 15 15 O 1.34638 * 119.99947 * 359.97438 * 13 3 2 16 16 C 1.45199 * 116.99720 * 180.02562 * 15 13 3 17 17 C 1.53002 * 109.47173 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.46817 * 65.00158 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99964 * 17 16 15 23 23 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46876 * 300.00137 * 1 2 3 25 25 H 1.09006 * 109.47113 * 59.99452 * 1 2 3 26 26 H 1.09003 * 109.47226 * 240.00489 * 2 1 3 27 27 H 1.08996 * 109.47224 * 120.00560 * 2 1 3 28 28 H 1.09000 * 109.46748 * 30.00141 * 4 3 2 29 29 H 1.09001 * 109.47364 * 150.00102 * 4 3 2 30 30 H 0.97000 * 120.00067 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.47080 * 60.00604 * 16 15 13 32 32 H 1.08997 * 109.47529 * 300.00493 * 16 15 13 33 33 H 1.09002 * 109.47070 * 305.00338 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2686 5 6 3.6859 1.8351 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1492 2.3898 -2.8779 8 7 3.3492 3.1259 -3.6179 9 14 5.9136 2.0969 -3.4167 10 1 5.9776 0.8756 -4.2591 11 1 6.3923 3.2641 -4.2000 12 1 6.7737 1.9179 -2.2195 13 6 2.2431 2.0165 1.1673 14 8 2.6477 3.1622 1.1674 15 8 2.0182 1.3818 2.3332 16 6 2.2814 2.1275 3.5510 17 6 1.9709 1.2487 4.7643 18 6 2.9392 0.0646 4.7975 19 6 2.6292 -0.8139 6.0112 20 6 2.7868 0.0100 7.2908 21 6 1.8185 1.1941 7.2576 22 6 2.1282 2.0722 6.0442 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5818 1.6878 -2.0283 29 1 2.0957 3.1411 -1.1383 30 1 3.6752 3.5164 -4.4438 31 1 1.6518 3.0171 3.5756 32 1 3.3300 2.4238 3.5762 33 1 0.9478 0.8795 4.6933 34 1 2.8273 -0.5221 3.8858 35 1 3.9623 0.4338 4.8686 36 1 3.3193 -1.6572 6.0351 37 1 1.6061 -1.1831 5.9405 38 1 3.8100 0.3792 7.3615 39 1 2.5655 -0.6158 8.1554 40 1 1.9305 1.7807 8.1694 41 1 0.7954 0.8248 7.1869 42 1 3.1512 2.4414 6.1153 43 1 1.4383 2.9158 6.0205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820790308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:51 Heat of formation + Delta-G solvation = -133.819009 kcal Electronic energy + Delta-G solvation = -21327.478724 eV Core-core repulsion = 18177.660738 eV Total energy + Delta-G solvation = -3149.817986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48317 -39.60794 -37.84403 -36.81102 -34.88078 -32.93593 -31.68427 -31.62149 -29.27744 -27.01779 -25.08487 -24.30711 -23.46759 -22.20064 -21.32810 -20.58724 -18.94258 -18.55536 -17.95191 -17.42770 -16.65684 -16.28440 -15.68893 -15.55145 -15.03407 -14.98349 -14.69528 -14.59326 -14.27700 -13.85316 -13.64885 -13.28649 -13.21235 -13.08377 -13.04211 -12.79766 -12.67345 -12.49719 -12.20312 -12.04291 -12.01307 -11.96887 -11.76046 -11.55527 -11.39670 -11.33543 -11.03213 -10.89181 -10.64897 -9.60555 -8.24303 -6.39060 1.30198 1.37847 1.40351 1.51431 1.90190 2.38130 3.03180 3.08424 3.65639 3.76380 3.86778 4.14958 4.16280 4.30686 4.35168 4.37415 4.41607 4.50416 4.57010 4.63498 4.64405 4.67511 4.79674 4.88547 4.92746 5.00474 5.02396 5.12762 5.18826 5.24496 5.26734 5.30050 5.35785 5.38508 5.43387 5.48073 5.54019 5.60682 5.77300 6.01568 6.59199 6.69089 7.26447 7.47103 8.83213 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.004104 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.547668 B = 6821.251590 C = 7134.678352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.107 3.893 3 N -0.582 5.582 4 C 0.276 3.724 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.275 1.275 13 C 0.638 3.362 14 O -0.619 6.619 15 O -0.361 6.361 16 C 0.084 3.916 17 C -0.073 4.073 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.112 4.112 23 H 0.096 0.904 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.003 0.997 30 H 0.269 0.731 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 -9.553 19.902 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.321 5.321 4 C 0.157 3.843 5 C -0.588 4.588 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.200 1.200 13 C 0.392 3.608 14 O -0.512 6.512 15 O -0.275 6.275 16 C 0.009 3.991 17 C -0.092 4.092 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.158 4.158 21 C -0.150 4.150 22 C -0.149 4.149 23 H 0.115 0.885 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.055 0.945 29 H 0.021 0.979 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.614 -9.122 19.801 22.284 hybrid contribution 0.942 0.562 -0.813 1.365 sum -3.672 -8.560 18.988 21.149 Atomic orbital electron populations 1.22088 0.94409 1.03476 1.01405 1.21674 0.95487 0.80692 1.03590 1.47260 1.66061 1.15531 1.03217 1.18838 0.95824 0.91504 0.78178 1.21696 0.97778 1.32485 1.06830 0.92989 1.25826 1.02494 0.94264 0.96199 1.70037 1.37799 1.33874 1.14768 0.85391 0.78770 0.78339 0.78156 1.18633 1.20407 1.20007 1.18284 0.77405 0.83045 0.82086 1.90905 1.53179 1.19567 1.87508 1.86204 1.81949 1.45746 1.13641 1.23224 1.00785 0.94803 0.80267 1.21194 1.01272 0.95548 0.91180 1.21562 0.98424 0.96299 0.98954 1.21513 1.02106 0.97760 0.93834 1.21573 0.99653 0.96992 0.97584 1.21484 0.99887 0.96518 0.97130 1.21518 1.02374 0.98118 0.92935 0.88537 0.93071 0.93642 0.90127 0.89366 0.94543 0.97888 0.92208 0.92034 0.92816 0.89585 0.92580 0.92712 0.91502 0.91455 0.92249 0.90758 0.90618 0.91340 0.91820 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 10.24 71.98 0.74 -3.66 16 2 C 0.11 3.71 6.13 86.38 0.53 4.24 16 3 N -0.58 -26.81 2.46 -956.55 -2.35 -29.15 16 4 C 0.28 15.27 5.16 85.63 0.44 15.71 16 5 C -0.55 -32.26 9.39 25.60 0.24 -32.02 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.67 5.46 84.66 0.46 1.14 16 8 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 9 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 C 0.64 29.89 8.39 129.79 1.09 30.98 16 14 O -0.62 -34.22 15.71 19.82 0.31 -33.91 16 15 O -0.36 -13.33 8.59 -55.48 -0.48 -13.80 16 16 C 0.08 2.56 4.85 71.98 0.35 2.91 16 17 C -0.07 -1.58 2.44 -10.79 -0.03 -1.61 16 18 C -0.11 -2.40 5.10 30.59 0.16 -2.25 16 19 C -0.11 -1.79 5.92 30.60 0.18 -1.61 16 20 C -0.12 -1.61 5.92 30.60 0.18 -1.42 16 21 C -0.11 -1.49 5.92 30.58 0.18 -1.31 16 22 C -0.11 -1.91 5.20 30.58 0.16 -1.76 16 23 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 27 H 0.09 2.71 7.37 -2.39 -0.02 2.70 16 28 H 0.04 2.01 8.07 -2.39 -0.02 1.99 16 29 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 30 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.34 7.82 -2.39 -0.02 1.32 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.88 348.02 5.42 -65.46 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.94 Total: 10.48 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 4.68 Total: 9.34 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.06 Total: -84.75 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.17 Total: -47.71 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -70.88 5.42 -65.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820790308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.359 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds