Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21507 * 120.00279 * 359.97438 * 14 12 2 16 16 O 1.34641 * 119.99921 * 179.97438 * 14 12 2 17 17 C 1.45198 * 116.99887 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.47226 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.46849 * 294.99697 * 18 17 16 20 20 C 1.52996 * 109.46892 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.46875 * 60.00440 * 20 19 18 22 22 C 1.53002 * 109.47001 * 299.99493 * 21 20 19 23 23 C 1.52993 * 109.47172 * 174.99621 * 18 17 16 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 29 29 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 30 30 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 31 31 H 1.09006 * 109.47106 * 299.99677 * 17 16 14 32 32 H 1.08998 * 109.47539 * 59.99674 * 17 16 14 33 33 H 1.08997 * 109.46798 * 54.99763 * 18 17 16 34 34 H 1.08997 * 109.46929 * 300.00424 * 19 18 17 35 35 H 1.09001 * 109.46730 * 59.99666 * 19 18 17 36 36 H 1.08989 * 109.47388 * 300.00250 * 20 19 18 37 37 H 1.09003 * 109.46611 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47195 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47630 * 59.99565 * 21 20 19 40 40 H 1.09001 * 109.47582 * 299.99994 * 22 21 20 41 41 H 1.09007 * 109.47048 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47446 * 300.00330 * 23 18 17 43 43 H 1.09001 * 109.47372 * 59.99898 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0871 1.1275 1.8908 16 8 3.2416 -0.6703 3.1828 17 6 4.0708 0.0972 4.0948 18 6 4.4821 -0.7850 5.2753 19 6 3.2401 -1.1681 6.0826 20 6 3.6513 -2.0508 7.2627 21 6 4.6251 -1.2829 8.1588 22 6 5.8671 -0.8998 7.3515 23 6 5.4557 -0.0167 6.1712 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 2.4158 -2.7377 0.9716 29 1 1.6239 -2.2853 2.5001 30 1 0.6905 -2.3002 0.9845 31 1 4.9626 0.4426 3.5717 32 1 3.5089 0.9564 4.4611 33 1 4.9662 -1.6877 4.9029 34 1 2.7560 -0.2653 6.4549 35 1 2.5465 -1.7154 5.4442 36 1 4.1352 -2.9535 6.8900 37 1 2.7665 -2.3233 7.8380 38 1 4.9177 -1.9116 8.9998 39 1 4.1413 -0.3801 8.5315 40 1 6.3510 -1.8025 6.9788 41 1 6.5611 -0.3531 7.9901 42 1 6.3405 0.2564 5.5961 43 1 4.9716 0.8861 6.5436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820790432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = -126.848732 kcal Electronic energy + Delta-G solvation = -21307.591291 eV Core-core repulsion = 18158.075559 eV Total energy + Delta-G solvation = -3149.515732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.50156 -39.62543 -38.04513 -36.79970 -34.82971 -32.96387 -31.62125 -31.25347 -27.85154 -27.33632 -26.88556 -23.87537 -23.35467 -22.13672 -21.11861 -20.58489 -18.94946 -18.35855 -18.00639 -17.48579 -16.71378 -16.30049 -15.67622 -15.45537 -15.02019 -14.96382 -14.67728 -14.57948 -14.01269 -13.68263 -13.49111 -13.24281 -13.09667 -13.02348 -12.96699 -12.75030 -12.71758 -12.65293 -12.20149 -12.14110 -12.02621 -11.99782 -11.56760 -11.49471 -11.33789 -11.21284 -11.03307 -10.89227 -10.54178 -9.49612 -8.16488 -6.33342 1.29824 1.43546 1.45880 1.53676 1.86777 2.41575 3.10286 3.12028 3.65815 3.76456 3.87581 4.14929 4.29853 4.34780 4.35239 4.46216 4.50777 4.62831 4.63825 4.65489 4.67678 4.75409 4.80018 4.87218 4.99225 5.00974 5.01828 5.16605 5.19659 5.26720 5.29705 5.32207 5.39546 5.46540 5.48975 5.55546 5.60032 5.66959 5.97630 6.11420 6.65891 6.72516 7.30205 7.46664 8.88275 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037458 B = 0.003666 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.334392 B = 7636.744587 C = 7711.939185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.276 3.724 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.060 0.940 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.581 5.581 13 C 0.093 3.907 14 C 0.635 3.365 15 O -0.624 6.624 16 O -0.363 6.363 17 C 0.084 3.916 18 C -0.075 4.075 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.022 0.978 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.267 0.733 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -7.506 19.309 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.175 3.825 3 H 0.033 0.967 4 C -0.583 4.583 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.319 5.319 13 C -0.049 4.049 14 C 0.389 3.611 15 O -0.518 6.518 16 O -0.277 6.277 17 C 0.009 3.991 18 C -0.094 4.094 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.149 4.149 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.685 -7.058 19.177 21.210 hybrid contribution 0.213 0.221 -1.204 1.242 sum 5.898 -6.837 17.973 20.113 Atomic orbital electron populations 1.21923 0.96427 1.00568 1.00358 1.18683 0.91918 0.92052 0.79821 0.96719 1.21525 1.32426 1.13346 0.90990 0.92133 1.25719 0.94926 0.95612 1.01925 1.69998 1.37019 1.23687 1.24741 0.85466 0.78366 0.79010 0.77917 1.18619 1.20676 1.20337 1.47276 1.49278 1.13800 1.21560 1.21697 1.01535 0.79743 1.01886 1.18340 0.79033 0.83314 0.80409 1.90888 1.63922 1.18267 1.78698 1.86210 1.65012 1.44560 1.31887 1.23233 0.92693 0.94435 0.88696 1.21207 0.97465 0.98565 0.92168 1.21561 0.96400 1.00166 0.97010 1.21517 0.99604 0.98245 0.95946 1.21567 0.95794 1.00377 0.97999 1.21507 0.97808 0.99675 0.96123 1.21530 0.98179 0.98665 0.96529 0.95871 0.92970 0.90711 0.92400 0.92883 0.89715 0.90266 0.92382 0.92161 0.90032 0.92253 0.92488 0.91750 0.91320 0.90849 0.91996 0.91605 0.90605 0.91384 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 8.95 71.98 0.64 -5.89 16 2 C 0.28 14.75 2.64 44.25 0.12 14.87 16 3 H 0.01 0.94 6.90 -2.39 -0.02 0.92 16 4 C -0.54 -30.11 8.37 25.60 0.21 -29.89 16 5 H 0.06 3.27 7.65 -2.91 -0.02 3.25 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.43 16 8 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 N -0.58 -26.65 2.75 -957.19 -2.63 -29.29 16 13 C 0.09 3.30 9.68 127.77 1.24 4.54 16 14 C 0.63 29.36 8.40 129.79 1.09 30.45 16 15 O -0.62 -33.61 15.46 19.82 0.31 -33.30 16 16 O -0.36 -13.30 8.59 -55.50 -0.48 -13.78 16 17 C 0.08 2.53 4.85 71.98 0.35 2.87 16 18 C -0.08 -1.62 2.43 -10.79 -0.03 -1.64 16 19 C -0.11 -2.27 5.10 30.59 0.16 -2.11 16 20 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 21 C -0.12 -1.54 5.92 30.59 0.18 -1.36 16 22 C -0.11 -1.51 5.92 30.61 0.18 -1.33 16 23 C -0.11 -1.89 5.21 30.61 0.16 -1.73 16 24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 2.28 6.66 -2.39 -0.02 2.27 16 26 H 0.07 3.99 6.07 -2.38 -0.01 3.98 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 29 H 0.08 2.51 7.37 -2.38 -0.02 2.49 16 30 H 0.08 2.68 6.43 -2.39 -0.02 2.67 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.63 338.86 5.35 -61.28 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.96 Total: 13.75 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 4.93 Total: 8.65 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.39 Total: -81.72 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.17 Total: -47.08 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -66.63 5.35 -61.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820790432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.570 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds