Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46941 * 2 1 4 4 C 1.53000 * 109.46869 * 119.99421 * 2 1 3 5 5 O 1.45198 * 109.47190 * 56.51714 * 4 2 1 6 6 C 1.34227 * 117.00257 * 179.97438 * 5 4 2 7 7 O 1.20827 * 119.99922 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00381 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47218 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47024 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00176 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00118 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99952 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00079 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46839 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47327 * 119.99944 * 14 12 10 17 17 H 1.48503 * 109.46766 * 240.00088 * 14 12 10 18 18 N 1.46895 * 109.47220 * 239.99768 * 2 1 3 19 19 C 1.46849 * 111.00108 * 61.63714 * 18 2 1 20 20 C 1.53039 * 109.51395 * 185.84487 * 19 18 2 21 21 C 1.53116 * 109.27902 * 300.80286 * 20 19 18 22 22 C 1.53117 * 109.15107 * 57.67012 * 21 20 19 23 23 C 1.46846 * 110.99843 * 185.84449 * 18 2 1 24 24 H 1.08996 * 109.47296 * 300.00373 * 1 2 3 25 25 H 1.09002 * 109.47510 * 60.00059 * 1 2 3 26 26 H 1.08995 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46710 * 176.51286 * 4 2 1 28 28 H 1.08998 * 109.47788 * 296.51425 * 4 2 1 29 29 H 1.08999 * 109.47083 * 300.00573 * 8 6 5 30 30 H 1.09002 * 109.47302 * 59.99595 * 8 6 5 31 31 H 1.08998 * 109.47134 * 299.99390 * 9 8 6 32 32 H 1.08993 * 109.47227 * 60.00241 * 9 8 6 33 33 H 0.97000 * 119.99785 * 180.02562 * 13 12 10 34 34 H 1.09004 * 109.45702 * 305.85415 * 19 18 2 35 35 H 1.08990 * 109.46633 * 65.83140 * 19 18 2 36 36 H 1.08999 * 109.50131 * 60.75360 * 20 19 18 37 37 H 1.08998 * 109.49817 * 180.86936 * 20 19 18 38 38 H 1.09004 * 109.52980 * 297.76872 * 21 20 19 39 39 H 1.09001 * 109.57621 * 177.60133 * 21 20 19 40 40 H 1.08998 * 109.50535 * 182.39910 * 22 21 20 41 41 H 1.08994 * 109.53628 * 62.30521 * 22 21 20 42 42 H 1.09001 * 109.46316 * 294.17280 * 23 18 2 43 43 H 1.09002 * 109.46344 * 54.15668 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 1.4892 -2.0639 1.2918 6 6 1.8416 -2.8346 2.3328 7 8 2.5853 -2.4012 3.1807 8 6 1.3098 -4.2402 2.4439 9 6 1.8606 -4.8951 3.7122 10 6 1.3282 -6.3005 3.8237 11 1 0.6638 -6.6880 3.0655 12 6 1.6901 -7.0920 4.8931 13 7 2.5004 -6.6207 5.8155 14 14 1.0308 -8.8344 5.0309 15 1 0.1458 -9.1217 3.8734 16 1 2.1643 -9.7935 5.0380 17 1 0.2573 -8.9727 6.2910 18 7 2.0196 -0.6925 -1.1994 19 6 1.5811 -0.0045 -2.4203 20 6 1.9834 -0.8297 -3.6447 21 6 3.5040 -1.0090 -3.6561 22 6 3.9400 -1.6839 -2.3526 23 6 3.4809 -0.8342 -1.1655 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1282 -0.7756 1.2186 28 1 1.7285 -0.1725 2.1382 29 1 0.2212 -4.2140 2.4923 30 1 1.6208 -4.8164 1.5725 31 1 2.9492 -4.9213 3.6642 32 1 1.5490 -4.3188 4.5834 33 1 2.7553 -7.1777 6.5676 34 1 0.4975 0.1130 -2.4016 35 1 2.0519 0.9771 -2.4732 36 1 1.5020 -1.8065 -3.5994 37 1 1.6714 -0.3112 -4.5514 38 1 3.9852 -0.0345 -3.7403 39 1 3.7920 -1.6320 -4.5029 40 1 5.0259 -1.7758 -2.3359 41 1 3.4899 -2.6744 -2.2868 42 1 3.9428 0.1514 -1.2242 43 1 3.7773 -1.3194 -0.2355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847964127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -105.248100 kcal Electronic energy + Delta-G solvation = -21097.233219 eV Core-core repulsion = 17948.654161 eV Total energy + Delta-G solvation = -3148.579058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11252 -39.14312 -36.28440 -34.52842 -33.53276 -31.22686 -31.09370 -30.34235 -27.22532 -25.71471 -24.29225 -22.90086 -22.19485 -20.45183 -19.96969 -19.52935 -17.31432 -16.96419 -16.16891 -15.74774 -15.42504 -14.87768 -14.74934 -14.42152 -14.31279 -13.88044 -13.66210 -13.52316 -13.21109 -12.61102 -12.47732 -12.21824 -11.90401 -11.83641 -11.52966 -11.35180 -11.32936 -11.09556 -10.95276 -10.87519 -10.59767 -10.45134 -10.42956 -10.10592 -9.98532 -9.84603 -9.49112 -9.12471 -8.40644 -8.35146 -5.98801 -4.03268 2.92957 3.20405 3.32770 3.40181 3.44262 3.66075 4.46574 4.54304 4.61392 4.70464 4.80038 4.89356 5.07514 5.10163 5.23638 5.26240 5.36713 5.38229 5.42926 5.49782 5.53096 5.60025 5.63583 5.76239 5.77900 5.82915 5.83619 5.97760 6.04934 6.19464 6.20099 6.26057 6.29948 6.72781 6.96380 6.98830 7.05357 7.70551 7.77968 8.01647 8.31816 8.50717 9.04321 9.60679 11.12305 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026484 B = 0.003542 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.993636 B = 7902.436807 C = 8264.975993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.055 0.945 4 C 0.068 3.932 5 O -0.346 6.346 6 C 0.454 3.546 7 O -0.512 6.512 8 C -0.102 4.102 9 C 0.033 3.967 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.524 5.524 19 C 0.053 3.947 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.117 4.117 23 C 0.049 3.951 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 15.146 -18.272 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.072 0.928 4 C -0.007 4.007 5 O -0.263 6.263 6 C 0.298 3.702 7 O -0.399 6.399 8 C -0.140 4.140 9 C -0.004 4.004 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.250 5.250 19 C -0.075 4.075 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.078 4.078 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.109 14.798 -17.860 23.220 hybrid contribution 0.243 0.059 0.295 0.387 sum -0.867 14.856 -17.564 23.021 Atomic orbital electron populations 1.21824 0.93284 1.03825 1.01267 1.21708 0.97020 0.94528 0.89069 0.92760 1.23024 0.98466 0.81923 0.97302 1.86637 1.67580 1.25013 1.47051 1.24773 0.78302 0.89152 0.77993 1.90625 1.34478 1.74273 1.40572 1.21719 1.02024 0.86080 1.04144 1.19011 0.97051 0.94570 0.89802 1.21211 1.29189 0.97889 1.08162 0.92258 1.25025 0.95093 0.98546 0.95710 1.70009 1.34410 1.36683 1.11768 0.86497 0.78751 0.84497 0.78008 1.19626 1.20985 1.21000 1.61902 1.11107 1.50887 1.01092 1.22149 1.00701 0.94778 0.89827 1.21577 0.96075 1.01180 0.96593 1.21577 0.96032 1.00391 0.97828 1.21571 1.00235 1.00030 0.93613 1.22200 0.87314 0.98501 0.99822 0.92225 0.92601 0.90361 0.91386 0.91180 0.89117 0.89034 0.95668 0.95676 0.92955 0.90292 0.95388 0.90823 0.91823 0.92607 0.91897 0.91649 0.90677 0.95271 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.84 37.16 0.33 -1.14 16 2 C 0.08 0.94 2.47 -67.72 -0.17 0.77 16 3 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 4 C 0.07 0.94 4.66 37.16 0.17 1.11 16 5 O -0.35 -5.82 9.34 -39.25 -0.37 -6.18 16 6 C 0.45 9.15 7.96 36.00 0.29 9.44 16 7 O -0.51 -11.89 15.73 -18.75 -0.29 -12.19 16 8 C -0.10 -2.14 5.75 -27.89 -0.16 -2.30 16 9 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 14 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 N -0.52 -5.88 4.46 -226.69 -1.01 -6.89 16 19 C 0.05 0.49 5.25 -3.83 -0.02 0.47 16 20 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 21 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 22 C -0.12 -1.15 6.09 -26.65 -0.16 -1.32 16 23 C 0.05 0.54 5.10 -3.83 -0.02 0.52 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 26 H 0.08 0.94 7.59 -51.93 -0.39 0.55 16 27 H 0.07 0.96 5.99 -51.92 -0.31 0.65 16 28 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 0.68 6.06 -51.93 -0.31 0.36 16 35 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 1.00 5.80 -51.93 -0.30 0.70 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -32.05 340.55 -8.94 -41.00 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.53 Total: -3.28 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.59 Total: -7.65 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: -0.27 Total: -33.43 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.66 Total: -18.37 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.05 -8.94 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847964127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.252 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds