Wall clock time and date at job start Mon Mar 30 2020 01:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47353 * 2 1 4 4 C 1.42902 * 113.99904 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47187 * 30.00461 * 4 3 2 6 6 C 1.50698 * 109.47038 * 269.99723 * 4 3 2 7 7 O 1.21283 * 120.00472 * 355.00619 * 6 4 3 8 8 N 1.34777 * 119.99538 * 174.99957 * 6 4 3 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 4 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47037 * 59.99882 * 15 13 11 17 17 H 1.48501 * 109.46667 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47133 * 299.99829 * 15 13 11 19 19 C 1.53001 * 109.46552 * 149.99986 * 4 3 2 20 20 C 1.54263 * 110.03474 * 57.16919 * 19 4 3 21 21 C 1.54893 * 104.19730 * 217.10114 * 20 19 4 22 22 C 1.54885 * 102.74637 * 37.94194 * 21 20 19 23 23 C 1.53871 * 110.03488 * 299.99665 * 19 4 3 24 24 H 1.09000 * 109.46950 * 299.99795 * 1 2 3 25 25 H 1.08995 * 109.46971 * 60.00273 * 1 2 3 26 26 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47341 * 239.99541 * 2 1 3 28 28 H 1.09007 * 109.47158 * 120.00017 * 2 1 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 33 33 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 34 34 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 35 35 H 1.09001 * 110.01453 * 178.60891 * 19 4 3 36 36 H 1.09005 * 110.48820 * 335.78214 * 20 19 4 37 37 H 1.09000 * 110.49094 * 98.42296 * 20 19 4 38 38 H 1.08997 * 110.75860 * 279.62807 * 21 20 19 39 39 H 1.08996 * 110.75511 * 156.25369 * 21 20 19 40 40 H 1.09005 * 110.48790 * 203.37835 * 22 21 20 41 41 H 1.09004 * 110.60322 * 80.79209 * 22 21 20 42 42 H 1.08997 * 110.03697 * 238.56866 * 23 19 4 43 43 H 1.08999 * 110.03370 * 359.95849 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9311 1.4999 1.4216 7 8 3.1416 1.5293 2.3418 8 7 5.2558 1.5028 1.6698 9 6 5.7421 1.5476 3.0510 10 6 7.2721 1.5483 3.0533 11 6 7.7723 1.5938 4.4742 12 1 7.0692 1.6200 5.2936 13 6 9.1275 1.6018 4.7280 14 7 9.9837 1.5703 3.7302 15 14 9.7475 1.6590 6.4892 16 1 9.2513 0.4699 7.2275 17 1 11.2325 1.6595 6.4913 18 1 9.2517 2.8936 7.1488 19 6 3.8410 2.7455 -0.7207 20 6 3.1778 3.9643 -0.0466 21 6 2.8307 4.9079 -1.2248 22 6 2.3840 3.9217 -2.3324 23 6 3.3364 2.7184 -2.1741 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 5.8873 1.4795 0.9339 30 1 5.3777 2.4537 3.5354 31 1 5.3784 0.6746 3.5929 32 1 7.6365 0.6423 2.5691 33 1 7.6359 2.4214 2.5116 34 1 10.9370 1.5756 3.9088 35 1 4.9255 2.8530 -0.7040 36 1 2.2723 3.6630 0.4804 37 1 3.8750 4.4484 0.6372 38 1 3.7089 5.4711 -1.5403 39 1 2.0161 5.5799 -0.9545 40 1 2.5020 4.3746 -3.3169 41 1 1.3502 3.6130 -2.1770 42 1 4.1759 2.8136 -2.8627 43 1 2.8000 1.7891 -2.3658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867344924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:59 Heat of formation + Delta-G solvation = -117.517183 kcal Electronic energy + Delta-G solvation = -21254.007600 eV Core-core repulsion = 18104.896514 eV Total energy + Delta-G solvation = -3149.111086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12511 -37.93126 -36.95026 -34.78041 -32.89134 -31.94154 -30.22408 -29.15679 -28.69161 -25.85247 -24.20443 -22.89365 -21.08981 -20.83601 -20.28239 -19.57031 -17.36867 -16.81248 -16.30388 -15.78306 -15.46740 -15.09096 -14.81379 -14.49391 -14.39142 -13.87904 -13.35049 -13.14855 -13.12198 -12.68533 -12.36737 -12.28447 -11.90014 -11.46666 -11.34209 -11.21692 -11.15245 -11.02912 -11.01869 -10.67181 -10.64639 -10.59321 -10.55026 -10.32190 -10.22130 -9.69318 -9.37082 -8.86947 -8.53715 -8.34981 -6.09993 -4.12932 2.96560 3.30768 3.34408 3.36080 3.41669 3.83984 4.40880 4.50104 4.58648 4.69221 4.95286 4.99240 5.09579 5.17398 5.26235 5.26983 5.32381 5.45732 5.50895 5.58456 5.62300 5.68369 5.75336 5.86477 5.87036 5.91253 6.02846 6.07298 6.24627 6.27126 6.34097 6.34634 6.47231 6.73390 6.91788 7.09323 7.50980 7.60780 7.88100 8.02000 8.27487 8.66806 8.92812 9.51938 11.01523 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.003906 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.790658 B = 7167.130475 C = 7857.774898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.350 6.350 4 C 0.080 3.920 5 H 0.081 0.919 6 C 0.484 3.516 7 O -0.535 6.535 8 N -0.721 5.721 9 C 0.122 3.878 10 C 0.013 3.987 11 C -0.523 4.523 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.085 4.085 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.396 0.604 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 0.584 -14.378 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.019 3.981 5 H 0.099 0.901 6 C 0.268 3.732 7 O -0.412 6.412 8 N -0.373 5.373 9 C 0.000 4.000 10 C -0.024 4.024 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.104 4.104 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.151 4.151 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.229 0.771 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.921 0.751 -13.733 20.293 hybrid contribution 1.054 -0.320 0.670 1.290 sum -13.866 0.430 -13.063 19.055 Atomic orbital electron populations 1.21687 0.93673 1.01997 1.03055 1.22546 0.95755 0.83972 0.99930 1.87963 1.18265 1.26081 1.94431 1.22048 0.83463 0.99634 0.93001 0.90130 1.21221 0.83072 0.77193 0.91713 1.90674 1.55278 1.49194 1.46086 1.46375 1.06269 1.73904 1.10763 1.21708 0.97958 1.00673 0.79667 1.19315 0.87157 0.97798 0.98135 1.21018 0.91776 1.51411 0.91916 0.92334 1.24987 0.96878 0.94956 0.97379 1.69941 1.02175 1.50297 1.30912 0.86577 0.77529 0.78806 0.84662 1.20113 1.21222 1.20093 1.21907 1.00466 0.93039 0.94953 1.22379 1.01438 0.94402 0.97437 1.22467 1.00682 0.97378 0.95503 1.22294 0.99540 0.95587 0.98247 1.22103 0.98932 0.99148 0.94884 0.91635 0.92087 0.91327 0.93671 0.93098 0.77069 0.92615 0.92715 0.95998 0.95931 0.92786 0.89286 0.90051 0.91703 0.91716 0.91780 0.92179 0.91501 0.91781 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.64 6.46 37.16 0.24 0.88 16 3 O -0.35 -4.83 7.98 -55.09 -0.44 -5.27 16 4 C 0.08 1.06 2.05 -27.88 -0.06 1.01 16 5 H 0.08 0.90 7.79 -51.93 -0.40 0.49 16 6 C 0.48 8.39 6.53 -10.99 -0.07 8.32 16 7 O -0.54 -11.45 16.51 -14.30 -0.24 -11.69 16 8 N -0.72 -12.64 5.52 -60.29 -0.33 -12.97 16 9 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 10 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 11 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 C -0.08 -0.99 2.79 -89.50 -0.25 -1.23 16 20 C -0.12 -1.52 5.67 -25.07 -0.14 -1.67 16 21 C -0.12 -1.27 6.91 -24.74 -0.17 -1.44 16 22 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 23 C -0.11 -1.09 6.22 -25.61 -0.16 -1.25 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.40 5.95 8.26 -40.82 -0.34 5.61 16 30 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.09 0.98 7.93 -51.93 -0.41 0.56 16 36 H 0.08 1.21 7.12 -51.93 -0.37 0.84 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.64 7.42 -51.93 -0.39 0.25 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -31.66 349.80 -8.79 -40.44 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.79 Total: 1.38 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.98 Total: -8.21 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.40 Total: -38.30 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.68 Total: -16.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.66 -8.79 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867344924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.073 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds