Wall clock time and date at job start Mon Mar 30 2020 01:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47353 * 2 1 4 4 C 1.42902 * 113.99904 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47187 * 30.00461 * 4 3 2 6 6 C 1.50698 * 109.47038 * 269.99723 * 4 3 2 7 7 O 1.21283 * 120.00472 * 355.00619 * 6 4 3 8 8 N 1.34777 * 119.99538 * 174.99957 * 6 4 3 9 9 C 1.46499 * 119.99665 * 179.72653 * 8 6 4 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47037 * 59.99882 * 15 13 11 17 17 H 1.48501 * 109.46667 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47133 * 299.99829 * 15 13 11 19 19 C 1.53001 * 109.46552 * 149.99986 * 4 3 2 20 20 C 1.54263 * 110.03474 * 57.16919 * 19 4 3 21 21 C 1.54893 * 104.19730 * 217.10114 * 20 19 4 22 22 C 1.54885 * 102.74637 * 37.94194 * 21 20 19 23 23 C 1.53871 * 110.03488 * 299.99665 * 19 4 3 24 24 H 1.09000 * 109.46950 * 299.99795 * 1 2 3 25 25 H 1.08995 * 109.46971 * 60.00273 * 1 2 3 26 26 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47341 * 239.99541 * 2 1 3 28 28 H 1.09007 * 109.47158 * 120.00017 * 2 1 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 8 6 4 30 30 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 31 31 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 32 32 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 33 33 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 34 34 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 35 35 H 1.09001 * 110.01453 * 178.60891 * 19 4 3 36 36 H 1.09005 * 110.48820 * 335.78214 * 20 19 4 37 37 H 1.09000 * 110.49094 * 98.42296 * 20 19 4 38 38 H 1.08997 * 110.75860 * 279.62807 * 21 20 19 39 39 H 1.08996 * 110.75511 * 156.25369 * 21 20 19 40 40 H 1.09005 * 110.48790 * 203.37835 * 22 21 20 41 41 H 1.09004 * 110.60322 * 80.79209 * 22 21 20 42 42 H 1.08997 * 110.03697 * 238.56866 * 23 19 4 43 43 H 1.08999 * 110.03370 * 359.95849 * 23 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9311 1.4999 1.4216 7 8 3.1416 1.5293 2.3418 8 7 5.2558 1.5028 1.6698 9 6 5.7421 1.5476 3.0510 10 6 7.2721 1.5483 3.0533 11 6 7.7723 1.5938 4.4742 12 1 7.0692 1.6200 5.2936 13 6 9.1275 1.6018 4.7280 14 7 9.9837 1.5703 3.7302 15 14 9.7475 1.6590 6.4892 16 1 9.2513 0.4699 7.2275 17 1 11.2325 1.6595 6.4913 18 1 9.2517 2.8936 7.1488 19 6 3.8410 2.7455 -0.7207 20 6 3.1778 3.9643 -0.0466 21 6 2.8307 4.9079 -1.2248 22 6 2.3840 3.9217 -2.3324 23 6 3.3364 2.7184 -2.1741 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 5.8873 1.4795 0.9339 30 1 5.3777 2.4537 3.5354 31 1 5.3784 0.6746 3.5929 32 1 7.6365 0.6423 2.5691 33 1 7.6359 2.4214 2.5116 34 1 10.9370 1.5756 3.9088 35 1 4.9255 2.8530 -0.7040 36 1 2.2723 3.6630 0.4804 37 1 3.8750 4.4484 0.6372 38 1 3.7089 5.4711 -1.5403 39 1 2.0161 5.5799 -0.9545 40 1 2.5020 4.3746 -3.3169 41 1 1.3502 3.6130 -2.1770 42 1 4.1759 2.8136 -2.8627 43 1 2.8000 1.7891 -2.3658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867344924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:59 Heat of formation + Delta-G solvation = -136.417615 kcal Electronic energy + Delta-G solvation = -21254.827184 eV Core-core repulsion = 18104.896514 eV Total energy + Delta-G solvation = -3149.930670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36398 -39.15279 -37.91259 -36.53586 -34.84558 -32.97679 -31.68622 -30.44353 -29.55428 -27.33418 -25.81273 -23.79241 -22.92739 -21.99771 -21.32553 -20.59491 -18.73804 -18.43020 -17.79719 -16.89286 -16.55601 -16.45507 -16.36592 -15.92470 -15.85258 -15.05895 -14.62869 -14.39038 -14.30658 -14.11375 -13.76703 -13.24682 -13.16652 -12.93999 -12.84504 -12.56406 -12.35614 -12.29535 -12.24883 -11.92626 -11.88523 -11.68664 -11.62141 -11.51576 -11.48567 -11.33071 -11.25144 -10.61061 -10.21666 -10.04511 -8.25065 -6.35702 1.40892 1.42963 1.51024 1.57770 2.12253 2.41599 2.72130 3.09527 3.55162 3.65751 3.78321 3.88483 4.05470 4.17776 4.29855 4.39311 4.46181 4.47401 4.48557 4.61660 4.64485 4.72028 4.76994 4.82166 4.88416 4.92351 5.02304 5.03912 5.12747 5.24902 5.26101 5.28930 5.35536 5.46364 5.48427 5.56123 5.56423 5.76833 6.09067 6.14988 6.62051 6.76847 7.25435 7.33582 8.86416 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.003906 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.790658 B = 7167.130475 C = 7857.774898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.363 6.363 4 C 0.088 3.912 5 H 0.111 0.889 6 C 0.482 3.518 7 O -0.580 6.580 8 N -0.714 5.714 9 C 0.141 3.859 10 C 0.025 3.975 11 C -0.550 4.550 12 H 0.056 0.944 13 C 0.010 3.990 14 N -0.925 5.925 15 Si 0.963 3.037 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.270 1.270 19 C -0.085 4.085 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.107 4.107 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.410 0.590 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.266 0.734 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.485 0.331 -15.895 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.281 6.281 4 C 0.027 3.973 5 H 0.129 0.871 6 C 0.269 3.731 7 O -0.460 6.460 8 N -0.367 5.367 9 C 0.018 3.982 10 C -0.013 4.013 11 C -0.589 4.589 12 H 0.074 0.926 13 C -0.189 4.189 14 N -0.564 5.564 15 Si 0.788 3.212 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.195 1.195 19 C -0.104 4.104 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.246 0.754 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.006 0.495 -15.284 21.425 hybrid contribution 1.044 -0.244 1.146 1.570 sum -13.961 0.251 -14.138 19.871 Atomic orbital electron populations 1.21697 0.92394 1.03312 1.02619 1.22762 0.96930 0.83094 1.00196 1.87977 1.18392 1.27522 1.94183 1.22122 0.83539 1.01759 0.89928 0.87127 1.22119 0.82182 0.75411 0.93372 1.90650 1.56253 1.51095 1.48007 1.46185 1.07045 1.73891 1.09556 1.21196 0.95774 0.99430 0.81832 1.19116 0.89021 0.96455 0.96668 1.21432 0.92380 1.51807 0.93232 0.92560 1.25835 0.97018 0.94327 1.01721 1.70039 1.02564 1.50782 1.33010 0.85530 0.77173 0.79085 0.79460 1.19391 1.20401 1.19454 1.21990 1.00904 0.91317 0.96139 1.22342 0.99871 0.95777 0.98085 1.22463 1.01189 0.97258 0.94756 1.22290 0.99140 0.95251 0.98687 1.22097 0.99641 0.99473 0.93265 0.93556 0.90982 0.89160 0.90799 0.95289 0.75371 0.94015 0.93856 0.97142 0.97174 0.92471 0.88422 0.92743 0.93580 0.90748 0.91665 0.90216 0.92093 0.89830 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.05 1.02 6.46 71.98 0.46 1.49 16 3 O -0.36 -9.71 7.98 -129.99 -1.04 -10.75 16 4 C 0.09 2.22 2.05 29.85 0.06 2.28 16 5 H 0.11 2.16 7.79 -2.39 -0.02 2.14 16 6 C 0.48 16.85 6.53 87.66 0.57 17.42 16 7 O -0.58 -25.61 16.51 15.95 0.26 -25.35 16 8 N -0.71 -25.15 5.52 -463.05 -2.55 -27.70 16 9 C 0.14 6.23 5.61 86.38 0.48 6.72 16 10 C 0.02 1.26 5.09 29.85 0.15 1.41 16 11 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 12 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 13 C 0.01 0.56 5.46 84.65 0.46 1.03 16 14 N -0.92 -54.00 13.29 21.45 0.28 -53.71 16 15 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C -0.08 -1.83 2.79 -10.07 -0.03 -1.86 16 20 C -0.12 -3.14 5.67 31.67 0.18 -2.96 16 21 C -0.12 -2.30 6.91 31.88 0.22 -2.08 16 22 C -0.12 -1.89 6.83 31.67 0.22 -1.68 16 23 C -0.11 -1.74 6.22 31.32 0.19 -1.54 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.20 8.09 -2.39 -0.02 1.19 16 28 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.41 12.08 8.26 -92.71 -0.77 11.31 16 30 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.10 1.95 7.93 -2.39 -0.02 1.93 16 36 H 0.05 1.68 7.12 -2.38 -0.02 1.66 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.12 7.42 -2.39 -0.02 1.10 16 Total: -1.00 -68.99 349.80 3.13 -65.86 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.20 Total: 18.32 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 3.95 Total: -12.40 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.27 Total: -81.41 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.77 Total: -36.10 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.99 3.13 -65.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867344924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.558 kcal (2) G-P(sol) polarization free energy of solvation -68.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds