Wall clock time and date at job start Mon Mar 30 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47084 * 2 1 4 4 C 1.42898 * 114.00328 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47420 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34784 * 120.00109 * 179.97438 * 9 8 7 12 12 C 1.47069 * 136.05284 * 359.63697 * 11 9 8 13 13 C 1.53758 * 87.88391 * 152.95561 * 12 11 9 14 14 C 1.50709 * 114.26562 * 139.78735 * 13 12 11 15 15 H 1.07996 * 120.00245 * 266.47753 * 14 13 12 16 16 C 1.37875 * 119.99790 * 86.47657 * 14 13 12 17 17 N 1.31522 * 120.00005 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00056 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46954 * 89.99997 * 18 16 14 20 20 H 1.48497 * 109.47138 * 209.99919 * 18 16 14 21 21 H 1.48494 * 109.46859 * 330.00163 * 18 16 14 22 22 C 1.47059 * 136.05949 * 179.97438 * 11 9 8 23 23 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47124 * 300.00051 * 1 2 3 25 25 H 1.08995 * 109.46983 * 59.99778 * 1 2 3 26 26 H 1.08999 * 109.47329 * 240.00419 * 2 1 3 27 27 H 1.08991 * 109.47665 * 120.00000 * 2 1 3 28 28 H 1.09000 * 109.47549 * 59.99449 * 4 3 2 29 29 H 1.09001 * 109.46605 * 299.99923 * 4 3 2 30 30 H 1.08996 * 109.47452 * 59.99899 * 5 4 3 31 31 H 1.09001 * 109.46997 * 299.99473 * 5 4 3 32 32 H 1.09001 * 109.47502 * 60.00153 * 6 5 4 33 33 H 1.09001 * 109.47289 * 299.99950 * 6 5 4 34 34 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 35 35 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 36 36 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 37 37 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 38 38 H 1.08995 * 113.46811 * 267.68445 * 12 11 9 39 39 H 1.09000 * 113.46782 * 38.13190 * 12 11 9 40 40 H 1.08994 * 114.40031 * 272.67293 * 13 12 11 41 41 H 0.96999 * 119.99914 * 179.97438 * 17 16 14 42 42 H 1.09000 * 113.46879 * 321.87522 * 22 11 9 43 43 H 1.09010 * 113.46500 * 92.25198 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3505 3.0593 0.0001 7 6 5.7450 4.5376 0.0002 8 6 7.2702 4.6584 -0.0004 9 6 7.6588 6.1144 -0.0010 10 8 6.8003 6.9712 -0.0005 11 7 8.9603 6.4646 -0.0011 12 6 10.2480 5.7542 0.0057 13 6 10.8606 6.9753 -0.6999 14 6 12.2356 7.3491 -0.2090 15 1 12.3483 8.0882 0.5703 16 6 13.3496 6.7473 -0.7547 17 7 13.2122 5.8468 -1.7034 18 14 15.0539 7.2100 -0.1458 19 1 15.4339 6.3229 0.9829 20 1 16.0337 7.0530 -1.2505 21 1 15.0486 8.6218 0.3143 22 6 9.7177 7.7252 -0.0020 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8334 0.9768 -0.8907 29 1 3.8339 0.9765 0.8892 30 1 3.4230 3.4215 0.8905 31 1 3.4222 3.4225 -0.8895 32 1 5.7533 2.5762 -0.8901 33 1 5.7534 2.5753 0.8899 34 1 5.3423 5.0211 -0.8898 35 1 5.3423 5.0210 0.8901 36 1 7.6734 4.1748 0.8893 37 1 7.6727 4.1750 -0.8907 38 1 10.6459 5.5864 1.0065 39 1 10.2492 4.8519 -0.6058 40 1 10.7824 6.9534 -1.7868 41 1 13.9960 5.4237 -2.0876 42 1 9.2672 8.5019 -0.6200 43 1 9.9748 8.0779 0.9969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869246817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:08 Heat of formation + Delta-G solvation = -96.362040 kcal Electronic energy + Delta-G solvation = -19659.585490 eV Core-core repulsion = 16511.391760 eV Total energy + Delta-G solvation = -3148.193730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11968 -39.18394 -38.87196 -36.47277 -34.64258 -33.18068 -31.70170 -30.69094 -27.84668 -26.72270 -26.32256 -23.69516 -23.35292 -22.02448 -21.72782 -19.65778 -18.73801 -17.84256 -17.45503 -17.42725 -16.90061 -16.59512 -16.40767 -15.96618 -15.48179 -15.29122 -14.49200 -14.26666 -14.05131 -13.71779 -13.50670 -13.34806 -13.24809 -13.10573 -12.94585 -12.75090 -12.57294 -12.47154 -12.20596 -12.15075 -12.04149 -11.89560 -11.76474 -11.44944 -11.38446 -11.05501 -10.70579 -10.53675 -10.49971 -9.55048 -8.16221 -6.27240 1.47908 1.50348 1.59568 1.66007 2.04511 2.47019 2.72590 3.14018 3.57318 3.93541 3.95187 4.08080 4.14755 4.20518 4.26483 4.31785 4.40739 4.47155 4.49121 4.52091 4.59050 4.61314 4.65943 4.71036 4.79193 4.86721 4.88350 4.95328 4.98158 5.01864 5.04396 5.09084 5.21182 5.27009 5.37439 5.45873 5.60081 5.81925 6.23844 6.30266 6.81176 6.94882 7.18931 7.42812 8.93731 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041880 B = 0.002349 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.421398 B =11918.484140 C =12412.503667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.418 6.418 4 C 0.062 3.938 5 C -0.116 4.116 6 C -0.106 4.106 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.522 3.478 10 O -0.602 6.602 11 N -0.649 5.649 12 C 0.115 3.885 13 C 0.021 3.979 14 C -0.529 4.529 15 H 0.065 0.935 16 C 0.021 3.979 17 N -0.918 5.918 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.101 3.899 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.052 0.948 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 -13.379 4.079 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.339 6.339 4 C -0.015 4.015 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.134 4.134 8 C -0.164 4.164 9 C 0.314 3.686 10 O -0.485 6.485 11 N -0.382 5.382 12 C -0.007 4.007 13 C 0.001 3.999 14 C -0.567 4.567 15 H 0.084 0.916 16 C -0.179 4.179 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.022 4.022 23 H 0.109 0.891 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.853 -12.971 3.961 21.633 hybrid contribution 1.129 0.245 0.039 1.156 sum -15.724 -12.726 3.999 20.620 Atomic orbital electron populations 1.21776 0.93123 1.03357 1.02564 1.22654 0.96268 0.82954 1.00881 1.87854 1.22299 1.28079 1.95626 1.22578 0.80489 0.97320 1.01072 1.21467 0.95959 0.95190 1.02756 1.21435 0.94341 0.94955 1.03647 1.21248 0.92557 0.97213 1.02344 1.21638 0.98612 0.90331 1.05820 1.21148 0.79615 0.92926 0.74863 1.90610 1.49502 1.54303 1.54039 1.50123 1.04589 1.12521 1.71001 1.23381 0.78257 0.98373 1.00720 1.20285 0.92187 0.92272 0.95120 1.21208 0.90658 1.23709 1.21094 0.91641 1.25758 1.02912 0.94659 0.94564 1.70055 1.31215 1.27468 1.26850 0.85540 0.79214 0.78925 0.77882 1.19776 1.21277 1.19261 1.23215 0.90183 0.88135 1.00632 0.89094 0.92425 0.92476 0.92614 0.92525 0.92418 0.92260 0.91811 0.92011 0.90510 0.90180 0.92752 0.92392 0.87157 0.87807 0.89962 0.91676 0.94315 0.92619 0.92964 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.05 0.69 6.66 71.98 0.48 1.17 16 3 O -0.42 -8.49 10.34 -148.98 -1.54 -10.03 16 4 C 0.06 1.03 5.94 71.98 0.43 1.46 16 5 C -0.12 -2.16 5.58 30.59 0.17 -1.99 16 6 C -0.11 -1.88 5.21 30.60 0.16 -1.72 16 7 C -0.10 -2.35 4.50 30.60 0.14 -2.21 16 8 C -0.12 -3.38 5.53 29.85 0.16 -3.21 16 9 C 0.52 20.01 8.08 87.65 0.71 20.72 16 10 O -0.60 -27.12 16.76 -3.03 -0.05 -27.17 16 11 N -0.65 -26.19 3.69 -857.83 -3.16 -29.36 16 12 C 0.12 4.68 8.00 83.27 0.67 5.35 16 13 C 0.02 0.97 3.79 -11.12 -0.04 0.93 16 14 C -0.53 -26.68 8.83 25.60 0.23 -26.45 16 15 H 0.07 3.21 7.81 -2.91 -0.02 3.18 16 16 C 0.02 1.09 5.46 84.65 0.46 1.56 16 17 N -0.92 -49.62 13.26 21.45 0.28 -49.34 16 18 Si 0.96 40.39 29.54 68.60 2.03 42.42 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 20 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 C 0.10 4.28 8.17 83.17 0.68 4.96 16 23 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 35 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.08 3.22 8.10 -2.39 -0.02 3.20 16 39 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.04 2.04 8.11 -2.39 -0.02 2.02 16 41 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 42 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.08 3.30 8.10 -2.38 -0.02 3.28 16 Total: -1.00 -62.24 359.71 3.48 -58.76 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.94 Total: 15.19 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.98 Total: -0.48 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.88 Total: -78.69 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.59 Total: -37.20 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -62.24 3.48 -58.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869246817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.597 kcal (2) G-P(sol) polarization free energy of solvation -62.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds