Wall clock time and date at job start Mon Mar 30 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47446 * 2 1 4 4 C 1.46496 * 120.00114 * 276.28359 * 3 2 1 5 5 C 1.50702 * 109.47285 * 266.22638 * 4 3 2 6 6 H 1.08000 * 119.99815 * 5.16357 * 5 4 3 7 7 C 1.37874 * 120.00161 * 185.15768 * 5 4 3 8 8 N 1.31519 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00023 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47338 * 120.00141 * 9 7 5 12 12 H 1.48498 * 109.47131 * 239.99657 * 9 7 5 13 13 C 1.34779 * 119.99933 * 96.28222 * 3 2 1 14 14 O 1.21288 * 120.00093 * 175.31520 * 13 3 2 15 15 C 1.50696 * 120.00279 * 355.58973 * 13 3 2 16 16 O 1.42907 * 112.84877 * 64.08207 * 15 13 3 17 17 C 1.42897 * 114.00010 * 65.90861 * 16 15 13 18 18 C 1.52992 * 109.47195 * 149.61461 * 17 16 15 19 19 C 1.53006 * 109.46916 * 269.61339 * 17 16 15 20 20 C 1.53778 * 113.61343 * 292.77761 * 15 13 3 21 21 C 1.53780 * 87.08022 * 220.01411 * 20 15 13 22 22 C 1.53777 * 87.08336 * 25.43526 * 21 20 15 23 23 H 1.08999 * 109.47347 * 305.59187 * 1 2 3 24 24 H 1.09006 * 109.46908 * 65.58920 * 1 2 3 25 25 H 1.08995 * 109.47538 * 185.58369 * 1 2 3 26 26 H 1.09000 * 109.47247 * 239.99340 * 2 1 3 27 27 H 1.09005 * 109.46633 * 120.00240 * 2 1 3 28 28 H 1.09002 * 109.47339 * 26.23131 * 4 3 2 29 29 H 1.09003 * 109.47192 * 146.22936 * 4 3 2 30 30 H 0.97002 * 120.00158 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47196 * 29.60958 * 17 16 15 32 32 H 1.08998 * 109.47334 * 64.94326 * 18 17 16 33 33 H 1.09005 * 109.47275 * 184.94312 * 18 17 16 34 34 H 1.09004 * 109.47455 * 304.94172 * 18 17 16 35 35 H 1.08996 * 109.47158 * 186.80287 * 19 17 16 36 36 H 1.08996 * 109.46897 * 306.80678 * 19 17 16 37 37 H 1.09002 * 109.46814 * 66.80624 * 19 17 16 38 38 H 1.09001 * 113.61729 * 334.56410 * 20 15 13 39 39 H 1.09006 * 113.61608 * 105.47091 * 20 15 13 40 40 H 1.08998 * 113.62087 * 270.88091 * 21 20 15 41 41 H 1.09001 * 113.69096 * 139.99234 * 21 20 15 42 42 H 1.08996 * 113.61297 * 220.02341 * 22 21 20 43 43 H 1.08998 * 113.69643 * 89.12316 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1317 2.1180 -1.2611 5 6 3.5310 1.9755 -1.8022 6 1 4.2384 1.3275 -1.3062 7 6 3.9080 2.6724 -2.9305 8 7 3.0467 3.4619 -3.5343 9 14 5.6422 2.4952 -3.6017 10 1 6.4099 1.5540 -2.7473 11 1 5.5848 1.9690 -4.9892 12 1 6.3105 3.8213 -3.6026 13 6 2.3635 1.9739 1.1602 14 8 2.8474 3.0860 1.1526 15 6 2.1538 1.2524 2.4665 16 8 2.9453 0.0679 2.5795 17 6 4.3522 0.3120 2.6340 18 6 5.0272 -0.7792 3.4674 19 6 4.9272 0.2999 1.2162 20 6 0.6728 1.0423 2.8234 21 6 1.0570 1.3736 4.2751 22 6 2.2390 2.1700 3.6977 23 1 -0.3634 0.5981 0.8357 24 1 -0.3633 0.4247 -0.9359 25 1 -0.3634 -1.0227 0.1000 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.4204 1.7155 -1.9823 29 1 1.9152 3.1720 -1.0867 30 1 3.3122 3.9525 -4.3279 31 1 4.5349 1.2842 3.0919 32 1 4.9197 -1.7398 2.9637 33 1 6.0858 -0.5458 3.5826 34 1 4.5573 -0.8293 4.4496 35 1 6.0141 0.3651 1.2643 36 1 4.6404 -0.6249 0.7157 37 1 4.5365 1.1511 0.6585 38 1 0.0061 1.7757 2.3699 39 1 0.3317 0.0162 2.6853 40 1 1.3596 0.5026 4.8564 41 1 0.3239 1.9932 4.7916 42 1 3.1622 2.0543 4.2654 43 1 2.0019 3.2119 3.4829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874147908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:44 Heat of formation + Delta-G solvation = -62.125372 kcal Electronic energy + Delta-G solvation = -22966.428005 eV Core-core repulsion = 19819.718889 eV Total energy + Delta-G solvation = -3146.709116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59954 -37.63030 -36.23657 -35.22657 -32.72607 -31.94450 -30.01545 -27.66745 -26.95376 -25.73690 -25.39323 -22.99834 -22.39472 -21.17071 -19.73468 -18.63645 -17.00506 -16.37504 -16.04523 -15.60849 -14.91003 -14.62850 -14.47865 -14.22020 -13.51845 -13.26818 -13.10110 -12.98217 -12.51598 -12.38027 -12.15379 -12.06328 -11.95529 -11.63669 -11.46037 -11.39574 -11.13404 -11.01498 -10.81148 -10.79222 -10.63886 -10.55462 -10.46323 -10.21583 -9.99067 -9.70153 -9.45421 -8.48343 -8.39756 -7.57060 -6.00871 -4.04538 3.24220 3.30896 3.38503 3.42290 3.70850 4.00282 4.46819 4.61544 4.77261 4.86865 5.00821 5.16483 5.25469 5.31716 5.35753 5.45364 5.57705 5.70453 5.75643 5.79801 5.83715 5.90862 5.94179 5.96212 5.99374 6.04997 6.09071 6.19768 6.27308 6.35931 6.39128 6.42326 6.65426 6.81124 7.07650 7.37465 7.48903 7.64990 7.96730 8.27621 8.49380 8.94743 9.13855 9.60273 11.07423 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.007197 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.460140 B = 3889.776293 C = 4491.297244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.584 5.584 4 C 0.245 3.755 5 C -0.520 4.520 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.498 3.502 14 O -0.536 6.536 15 C 0.074 3.926 16 O -0.346 6.346 17 C 0.078 3.922 18 C -0.145 4.145 19 C -0.185 4.185 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.145 4.145 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.261 0.739 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -8.661 13.903 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.026 4.026 3 N -0.316 5.316 4 C 0.126 3.874 5 C -0.559 4.559 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.283 3.717 14 O -0.414 6.414 15 C 0.031 3.969 16 O -0.265 6.265 17 C 0.021 3.979 18 C -0.202 4.202 19 C -0.242 4.242 20 C -0.156 4.156 21 C -0.173 4.173 22 C -0.183 4.183 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.908 -8.145 13.714 16.213 hybrid contribution 1.108 0.132 -0.722 1.329 sum -1.799 -8.013 12.992 15.370 Atomic orbital electron populations 1.22368 0.97155 1.01266 1.02482 1.21608 0.93415 0.84133 1.03432 1.48222 1.62108 1.13245 1.07985 1.19268 0.96910 0.92600 0.78654 1.21502 0.97505 1.26591 1.10284 0.92042 1.24923 0.97369 0.94997 0.96810 1.69945 1.34611 1.28703 1.20258 0.86503 0.84725 0.77956 0.78622 1.19781 1.21032 1.20954 1.20591 0.79061 0.86716 0.85291 1.90680 1.43381 1.20438 1.86896 1.22822 0.94004 0.87118 0.93004 1.87867 1.17085 1.27818 1.93769 1.22140 0.80462 0.98805 0.96470 1.21853 0.99802 0.98928 0.99626 1.22494 1.00709 1.04451 0.96578 1.23112 0.93109 1.03163 0.96235 1.22802 0.98052 1.00252 0.96157 1.23350 0.99308 0.99925 0.95735 0.92337 0.92500 0.92428 0.90880 0.89475 0.95311 0.94141 0.92891 0.91797 0.91945 0.91451 0.92296 0.92273 0.92041 0.89726 0.88622 0.89715 0.89783 0.91175 0.90845 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.69 37.16 0.36 -2.15 16 2 C 0.10 1.70 5.66 -4.05 -0.02 1.67 16 3 N -0.58 -12.51 2.32 -175.06 -0.41 -12.92 16 4 C 0.24 6.43 5.11 -5.20 -0.03 6.40 16 5 C -0.52 -14.73 9.31 -34.44 -0.32 -15.05 16 6 H 0.06 1.73 6.31 -52.49 -0.33 1.40 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 13 C 0.50 10.53 4.35 -10.99 -0.05 10.48 16 14 O -0.54 -13.63 15.78 5.55 0.09 -13.54 16 15 C 0.07 1.19 0.25 -90.96 -0.02 1.17 16 16 O -0.35 -5.40 7.92 -35.23 -0.28 -5.68 16 17 C 0.08 1.19 2.97 -26.73 -0.08 1.11 16 18 C -0.14 -1.69 9.56 37.15 0.36 -1.33 16 19 C -0.18 -3.25 9.18 37.16 0.34 -2.91 16 20 C -0.12 -1.56 4.92 -25.92 -0.13 -1.69 16 21 C -0.14 -1.55 8.02 -25.92 -0.21 -1.76 16 22 C -0.15 -2.09 6.67 -25.92 -0.17 -2.27 16 23 H 0.06 0.80 5.06 -51.93 -0.26 0.54 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 27 H 0.09 1.41 5.15 -51.93 -0.27 1.14 16 28 H 0.03 0.76 8.04 -51.93 -0.42 0.35 16 29 H 0.04 1.20 7.61 -51.93 -0.40 0.81 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.06 1.01 6.38 -51.93 -0.33 0.68 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.86 4.50 -51.93 -0.23 1.63 16 38 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16 39 H 0.08 1.01 7.48 -51.93 -0.39 0.62 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.00 6.89 -51.93 -0.36 0.64 16 43 H 0.10 1.54 7.69 -51.93 -0.40 1.14 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -31.97 333.52 -7.05 -39.02 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.13 Total: 1.81 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.07 Total: -4.67 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.33 Total: -39.09 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.19 Total: -19.22 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.97 -7.05 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874147908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.102 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds