Wall clock time and date at job start Mon Mar 30 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47446 * 2 1 4 4 C 1.46496 * 120.00114 * 276.28359 * 3 2 1 5 5 C 1.50702 * 109.47285 * 266.22638 * 4 3 2 6 6 H 1.08000 * 119.99815 * 5.16357 * 5 4 3 7 7 C 1.37874 * 120.00161 * 185.15768 * 5 4 3 8 8 N 1.31519 * 120.00146 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00023 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47371 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47338 * 120.00141 * 9 7 5 12 12 H 1.48498 * 109.47131 * 239.99657 * 9 7 5 13 13 C 1.34779 * 119.99933 * 96.28222 * 3 2 1 14 14 O 1.21288 * 120.00093 * 175.31520 * 13 3 2 15 15 C 1.50696 * 120.00279 * 355.58973 * 13 3 2 16 16 O 1.42907 * 112.84877 * 64.08207 * 15 13 3 17 17 C 1.42897 * 114.00010 * 65.90861 * 16 15 13 18 18 C 1.52992 * 109.47195 * 149.61461 * 17 16 15 19 19 C 1.53006 * 109.46916 * 269.61339 * 17 16 15 20 20 C 1.53778 * 113.61343 * 292.77761 * 15 13 3 21 21 C 1.53780 * 87.08022 * 220.01411 * 20 15 13 22 22 C 1.53777 * 87.08336 * 25.43526 * 21 20 15 23 23 H 1.08999 * 109.47347 * 305.59187 * 1 2 3 24 24 H 1.09006 * 109.46908 * 65.58920 * 1 2 3 25 25 H 1.08995 * 109.47538 * 185.58369 * 1 2 3 26 26 H 1.09000 * 109.47247 * 239.99340 * 2 1 3 27 27 H 1.09005 * 109.46633 * 120.00240 * 2 1 3 28 28 H 1.09002 * 109.47339 * 26.23131 * 4 3 2 29 29 H 1.09003 * 109.47192 * 146.22936 * 4 3 2 30 30 H 0.97002 * 120.00158 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47196 * 29.60958 * 17 16 15 32 32 H 1.08998 * 109.47334 * 64.94326 * 18 17 16 33 33 H 1.09005 * 109.47275 * 184.94312 * 18 17 16 34 34 H 1.09004 * 109.47455 * 304.94172 * 18 17 16 35 35 H 1.08996 * 109.47158 * 186.80287 * 19 17 16 36 36 H 1.08996 * 109.46897 * 306.80678 * 19 17 16 37 37 H 1.09002 * 109.46814 * 66.80624 * 19 17 16 38 38 H 1.09001 * 113.61729 * 334.56410 * 20 15 13 39 39 H 1.09006 * 113.61608 * 105.47091 * 20 15 13 40 40 H 1.08998 * 113.62087 * 270.88091 * 21 20 15 41 41 H 1.09001 * 113.69096 * 139.99234 * 21 20 15 42 42 H 1.08996 * 113.61297 * 220.02341 * 22 21 20 43 43 H 1.08998 * 113.69643 * 89.12316 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1317 2.1180 -1.2611 5 6 3.5310 1.9755 -1.8022 6 1 4.2384 1.3275 -1.3062 7 6 3.9080 2.6724 -2.9305 8 7 3.0467 3.4619 -3.5343 9 14 5.6422 2.4952 -3.6017 10 1 6.4099 1.5540 -2.7473 11 1 5.5848 1.9690 -4.9892 12 1 6.3105 3.8213 -3.6026 13 6 2.3635 1.9739 1.1602 14 8 2.8474 3.0860 1.1526 15 6 2.1538 1.2524 2.4665 16 8 2.9453 0.0679 2.5795 17 6 4.3522 0.3120 2.6340 18 6 5.0272 -0.7792 3.4674 19 6 4.9272 0.2999 1.2162 20 6 0.6728 1.0423 2.8234 21 6 1.0570 1.3736 4.2751 22 6 2.2390 2.1700 3.6977 23 1 -0.3634 0.5981 0.8357 24 1 -0.3633 0.4247 -0.9359 25 1 -0.3634 -1.0227 0.1000 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.4204 1.7155 -1.9823 29 1 1.9152 3.1720 -1.0867 30 1 3.3122 3.9525 -4.3279 31 1 4.5349 1.2842 3.0919 32 1 4.9197 -1.7398 2.9637 33 1 6.0858 -0.5458 3.5826 34 1 4.5573 -0.8293 4.4496 35 1 6.0141 0.3651 1.2643 36 1 4.6404 -0.6249 0.7157 37 1 4.5365 1.1511 0.6585 38 1 0.0061 1.7757 2.3699 39 1 0.3317 0.0162 2.6853 40 1 1.3596 0.5026 4.8564 41 1 0.3239 1.9932 4.7916 42 1 3.1622 2.0543 4.2654 43 1 2.0019 3.2119 3.4829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874147908.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:44 Heat of formation + Delta-G solvation = -82.179542 kcal Electronic energy + Delta-G solvation = -22967.297620 eV Core-core repulsion = 19819.718889 eV Total energy + Delta-G solvation = -3147.578731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.97477 -39.19482 -37.42484 -36.93915 -34.86680 -33.13751 -31.61802 -29.51411 -28.20786 -26.98621 -26.74888 -24.81360 -23.90890 -22.35176 -21.08871 -20.01634 -18.77407 -18.30583 -17.47316 -17.13182 -16.47810 -16.23911 -15.85100 -15.56386 -15.14037 -14.71999 -14.51136 -14.25608 -14.18100 -13.64338 -13.54933 -13.49282 -13.27686 -13.10262 -13.02140 -12.76961 -12.74693 -12.61171 -12.36929 -12.29486 -12.03855 -11.91388 -11.83496 -11.71923 -11.55094 -11.42170 -10.91617 -10.66010 -10.04717 -9.40854 -8.22852 -6.35828 1.31685 1.33932 1.45420 1.67099 2.26318 2.41203 2.52228 3.06607 3.44189 3.62480 3.65243 3.83371 3.97338 4.11722 4.19492 4.24488 4.29797 4.46491 4.64505 4.67576 4.70161 4.77602 4.84096 4.85450 4.92121 4.96746 4.99084 5.00839 5.06838 5.07043 5.13759 5.18941 5.26991 5.36242 5.39773 5.42941 5.64033 5.86910 6.06617 6.12620 6.70112 6.82781 7.28341 7.46766 8.84725 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019556 B = 0.007197 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.460140 B = 3889.776293 C = 4491.297244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.588 5.588 4 C 0.262 3.738 5 C -0.532 4.532 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.492 3.508 14 O -0.592 6.592 15 C 0.070 3.930 16 O -0.338 6.338 17 C 0.076 3.924 18 C -0.135 4.135 19 C -0.182 4.182 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.151 4.151 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.019 0.981 29 H -0.006 1.006 30 H 0.265 0.735 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -11.156 15.982 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.318 5.318 4 C 0.140 3.860 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.280 3.720 14 O -0.474 6.474 15 C 0.027 3.973 16 O -0.257 6.257 17 C 0.019 3.981 18 C -0.192 4.192 19 C -0.240 4.240 20 C -0.152 4.152 21 C -0.148 4.148 22 C -0.189 4.189 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.037 0.963 29 H 0.012 0.988 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.830 -10.690 15.809 19.293 hybrid contribution 1.088 0.933 -1.391 1.997 sum -1.743 -9.757 14.418 17.496 Atomic orbital electron populations 1.22315 0.94511 1.03666 1.01993 1.21836 0.95564 0.81589 1.03661 1.48225 1.62326 1.14586 1.06639 1.18715 0.95911 0.90601 0.80752 1.21770 0.98306 1.26565 1.10443 0.92339 1.25825 1.01654 0.94591 0.97148 1.70064 1.36708 1.29521 1.20807 0.85459 0.79497 0.77966 0.78500 1.19043 1.19430 1.20853 1.21624 0.77326 0.86288 0.86743 1.90633 1.45682 1.23161 1.87892 1.22931 0.96500 0.87656 0.90217 1.87876 1.17267 1.27195 1.93389 1.22249 0.80446 1.00076 0.95308 1.21808 1.00340 0.97432 0.99628 1.22446 1.01545 1.02129 0.97830 1.23184 0.90401 1.04334 0.97311 1.22753 0.96455 1.00429 0.95164 1.23394 1.01392 0.98946 0.95173 0.91372 0.94261 0.88728 0.92036 0.87740 0.96265 0.98808 0.92581 0.92762 0.91415 0.90011 0.90504 0.91006 0.91957 0.94592 0.89192 0.87580 0.87730 0.88979 0.90125 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 9.69 71.98 0.70 -3.85 16 2 C 0.10 3.28 5.66 86.38 0.49 3.76 16 3 N -0.59 -26.12 2.32 -826.16 -1.92 -28.03 16 4 C 0.26 14.58 5.11 85.63 0.44 15.02 16 5 C -0.53 -31.47 9.31 25.60 0.24 -31.23 16 6 H 0.06 3.42 6.31 -2.91 -0.02 3.40 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 9 Si 0.96 46.33 29.54 68.60 2.03 48.35 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 C 0.49 21.54 4.35 87.66 0.38 21.92 16 14 O -0.59 -32.04 15.78 -3.05 -0.05 -32.08 16 15 C 0.07 2.20 0.25 -11.01 0.00 2.20 16 16 O -0.34 -9.83 7.92 -148.98 -1.18 -11.01 16 17 C 0.08 2.20 2.97 30.59 0.09 2.29 16 18 C -0.14 -2.70 9.56 71.98 0.69 -2.01 16 19 C -0.18 -6.37 9.18 71.98 0.66 -5.71 16 20 C -0.12 -2.71 4.92 31.12 0.15 -2.56 16 21 C -0.11 -2.13 8.02 31.12 0.25 -1.88 16 22 C -0.15 -4.17 6.67 31.12 0.21 -3.96 16 23 H 0.07 1.73 5.06 -2.39 -0.01 1.72 16 24 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 27 H 0.10 3.21 5.15 -2.38 -0.01 3.19 16 28 H 0.02 1.09 8.04 -2.39 -0.02 1.07 16 29 H -0.01 -0.40 7.61 -2.39 -0.02 -0.42 16 30 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.05 1.68 6.38 -2.38 -0.02 1.66 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.03 1.62 4.50 -2.39 -0.01 1.60 16 38 H 0.09 2.24 7.40 -2.39 -0.02 2.23 16 39 H 0.11 2.07 7.48 -2.38 -0.02 2.05 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 2.07 6.89 -2.39 -0.02 2.06 16 43 H 0.08 2.47 7.69 -2.39 -0.02 2.45 16 Total: -1.00 -74.23 333.52 4.90 -69.33 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.98 Total: 16.24 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.75 Total: -5.18 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -1.63 Total: -85.65 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.23 Total: -43.09 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -74.23 4.90 -69.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874147908.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.853 kcal (2) G-P(sol) polarization free energy of solvation -74.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds