Wall clock time and date at job start Mon Mar 30 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00299 * 2 1 4 4 H 1.08002 * 120.00092 * 203.17942 * 3 2 1 5 5 C 1.38811 * 119.99632 * 23.17573 * 3 2 1 6 6 N 1.31618 * 120.00307 * 13.65216 * 5 3 2 7 7 Si 1.86798 * 119.99775 * 193.65444 * 5 3 2 8 8 H 1.48506 * 109.47325 * 60.00267 * 7 5 3 9 9 H 1.48497 * 109.47302 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47089 * 300.00175 * 7 5 3 11 11 C 1.46500 * 119.99600 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47367 * 89.99767 * 11 2 1 13 13 H 1.09004 * 109.47073 * 60.00727 * 12 11 2 14 14 C 1.53088 * 109.47718 * 180.02562 * 12 11 2 15 15 C 1.53201 * 109.14991 * 177.64182 * 14 12 11 16 16 C 1.53064 * 109.02675 * 303.15178 * 15 14 12 17 17 C 1.53058 * 109.56737 * 176.96638 * 16 15 14 18 18 C 1.53121 * 109.16437 * 176.78243 * 17 16 15 19 19 O 1.42894 * 109.40803 * 302.54353 * 18 17 16 20 20 C 1.42907 * 114.12952 * 61.19651 * 19 18 17 21 21 C 1.53074 * 109.52401 * 296.76902 * 16 15 14 22 22 C 1.52988 * 109.35900 * 56.83678 * 16 15 14 23 23 O 1.42899 * 109.47709 * 300.00117 * 12 11 2 24 24 H 1.09002 * 109.47337 * 275.15907 * 1 2 3 25 25 H 1.08995 * 109.46875 * 35.15904 * 1 2 3 26 26 H 1.09001 * 109.47465 * 155.15815 * 1 2 3 27 27 H 0.97000 * 120.00322 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47657 * 329.99735 * 11 2 1 29 29 H 1.09003 * 109.47062 * 209.99862 * 11 2 1 30 30 H 1.09001 * 109.52442 * 57.74003 * 14 12 11 31 31 H 1.09007 * 109.52606 * 297.54398 * 14 12 11 32 32 H 1.09002 * 109.54152 * 183.29310 * 15 14 12 33 33 H 1.08988 * 109.62123 * 63.06297 * 15 14 12 34 34 H 1.09005 * 109.52291 * 296.68796 * 17 16 15 35 35 H 1.08990 * 109.52558 * 56.87576 * 17 16 15 36 36 H 1.09005 * 109.47582 * 182.56328 * 18 17 16 37 37 H 1.08997 * 109.49137 * 62.53876 * 18 17 16 38 38 H 1.08995 * 109.48669 * 178.81362 * 20 19 18 39 39 H 1.08999 * 109.50023 * 58.77093 * 20 19 18 40 40 H 1.08998 * 109.52076 * 303.07474 * 21 16 15 41 41 H 1.09005 * 109.51843 * 63.26364 * 21 16 15 42 42 H 1.08999 * 109.47786 * 182.54848 * 22 16 15 43 43 H 1.09000 * 109.49323 * 62.52061 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1644 1.2236 -0.3682 5 6 1.5397 2.3395 0.4731 6 7 0.4216 2.2573 1.1627 7 14 2.3056 4.0085 0.1311 8 1 2.3900 4.2232 -1.3360 9 1 1.4670 5.0721 0.7399 10 1 3.6689 4.0572 0.7177 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 1 3.0417 -0.9501 -1.9568 14 6 3.2172 -3.0361 -1.4440 15 6 3.4168 -3.5004 -2.8902 16 6 2.0505 -3.6140 -3.5709 17 6 2.2399 -4.0041 -5.0387 18 6 0.8670 -4.1937 -5.6897 19 8 0.1328 -5.1855 -4.9692 20 6 -0.1170 -4.8498 -3.6028 21 6 1.2161 -4.6873 -2.8674 22 6 1.3287 -2.2677 -3.4871 23 8 1.2038 -1.8805 -2.1171 24 1 -0.3634 0.0924 1.0235 25 1 -0.3633 0.8401 -0.5918 26 1 -0.3634 -0.9326 -0.4317 27 1 -0.0045 3.0635 1.4936 28 1 1.6084 -2.0287 0.5129 29 1 3.1499 -1.1387 0.5133 30 1 2.6466 -3.7860 -0.8961 31 1 4.1883 -2.8969 -0.9687 32 1 3.9091 -4.4728 -2.8963 33 1 4.0317 -2.7769 -3.4253 34 1 2.7835 -3.2149 -5.5582 35 1 2.8029 -4.9355 -5.0984 36 1 0.9960 -4.5160 -6.7229 37 1 0.3212 -3.2504 -5.6686 38 1 -0.6967 -5.6444 -3.1332 39 1 -0.6753 -3.9149 -3.5540 40 1 1.7562 -5.6341 -2.8788 41 1 1.0293 -4.3859 -1.8366 42 1 0.3374 -2.3585 -3.9311 43 1 1.9012 -1.5138 -4.0274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878042905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:39 Heat of formation + Delta-G solvation = -80.756689 kcal Electronic energy + Delta-G solvation = -22390.058806 eV Core-core repulsion = 19242.541775 eV Total energy + Delta-G solvation = -3147.517031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58655 -38.02948 -35.44831 -34.25415 -32.46384 -31.23994 -30.80383 -28.21979 -26.07306 -25.52381 -24.67097 -23.67353 -22.72697 -20.88788 -20.30250 -18.61002 -16.75831 -16.42760 -16.06829 -15.70883 -15.23409 -14.84225 -14.60206 -14.54642 -14.37148 -13.80225 -13.29428 -12.97558 -12.70068 -12.61765 -12.34100 -12.12543 -11.83763 -11.57483 -11.40235 -11.27492 -10.90341 -10.74480 -10.67978 -10.58829 -10.53259 -10.30558 -10.21333 -9.87925 -9.81311 -9.68421 -9.41816 -8.87258 -8.44453 -6.61231 -5.63162 -3.09607 3.41940 3.47498 3.48439 3.81827 4.23471 4.54795 4.58856 4.65452 4.71948 4.95789 5.10655 5.12206 5.17886 5.28475 5.41832 5.43529 5.52612 5.57215 5.62860 5.63835 5.72975 5.79645 5.85186 5.93502 5.97805 6.03533 6.10429 6.14353 6.19864 6.29075 6.34658 6.46457 6.64427 6.84810 7.08139 7.13312 7.56537 7.82570 7.85999 7.91214 8.49152 9.33490 9.97724 10.48476 11.40650 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.004705 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.724733 B = 5949.950152 C = 6021.408048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.594 5.594 3 C -0.255 4.255 4 H 0.063 0.937 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.160 3.840 12 C 0.069 3.931 13 H 0.051 0.949 14 C -0.150 4.150 15 C -0.107 4.107 16 C -0.093 4.093 17 C -0.143 4.143 18 C 0.059 3.941 19 O -0.387 6.387 20 C 0.058 3.942 21 C -0.137 4.137 22 C 0.067 3.933 23 O -0.354 6.354 24 H 0.024 0.976 25 H 0.034 0.966 26 H 0.008 0.992 27 H 0.252 0.748 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -14.288 -10.832 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.315 5.315 3 C -0.384 4.384 4 H 0.081 0.919 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.032 3.968 12 C 0.008 3.992 13 H 0.069 0.931 14 C -0.189 4.189 15 C -0.144 4.144 16 C -0.094 4.094 17 C -0.181 4.181 18 C -0.018 4.018 19 O -0.306 6.306 20 C -0.019 4.019 21 C -0.175 4.175 22 C -0.011 4.011 23 O -0.273 6.273 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.577 -14.263 -10.710 18.022 hybrid contribution 0.873 1.216 -0.295 1.525 sum 3.450 -13.047 -11.005 17.414 Atomic orbital electron populations 1.20709 0.82323 0.95880 0.98601 1.43747 1.02044 1.00171 1.85584 1.19110 0.98213 0.85941 1.35181 0.91879 1.24984 0.97989 0.98337 0.98265 1.70075 1.19969 1.27130 1.37909 0.86386 0.78388 0.84164 0.77877 1.21243 1.21655 1.21019 1.20761 0.96588 0.88967 0.90485 1.23191 0.84834 0.93508 0.97641 0.93073 1.22249 1.01115 0.99282 0.96222 1.21589 0.95487 1.01068 0.96270 1.21154 0.96567 0.96826 0.94807 1.22182 0.98137 1.02223 0.95519 1.22589 0.91395 0.92246 0.95582 1.87890 1.74881 1.44635 1.23150 1.22655 0.96410 1.01164 0.81641 1.22138 0.96281 0.98238 1.00846 1.22580 1.00026 0.92843 0.85637 1.88062 1.29439 1.88362 1.21396 0.95754 0.94749 0.97352 0.93825 0.94077 0.92237 0.91272 0.91305 0.92092 0.92055 0.90942 0.91055 0.89169 0.92993 0.89079 0.92536 0.91651 0.89660 0.89807 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.40 8.66 59.85 0.52 4.92 16 2 N -0.59 -15.38 2.84 -181.11 -0.51 -15.90 16 3 C -0.25 -7.14 9.65 -15.06 -0.15 -7.29 16 4 H 0.06 1.72 7.87 -52.49 -0.41 1.31 16 5 C 0.00 0.07 5.09 -17.43 -0.09 -0.02 16 6 N -0.91 -27.12 10.76 55.49 0.60 -26.52 16 7 Si 0.90 22.23 29.57 -169.99 -5.03 17.20 16 8 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 C 0.16 3.35 5.37 -4.04 -0.02 3.33 16 12 C 0.07 1.23 2.91 -26.68 -0.08 1.15 16 13 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.15 -2.07 5.06 -26.58 -0.13 -2.21 16 15 C -0.11 -1.28 4.81 -26.59 -0.13 -1.41 16 16 C -0.09 -1.11 0.51 -154.41 -0.08 -1.19 16 17 C -0.14 -1.46 4.92 -26.64 -0.13 -1.59 16 18 C 0.06 0.60 6.57 37.22 0.24 0.85 16 19 O -0.39 -4.75 10.76 -35.23 -0.38 -5.13 16 20 C 0.06 0.67 6.57 37.22 0.24 0.91 16 21 C -0.14 -1.62 4.46 -26.63 -0.12 -1.74 16 22 C 0.07 0.97 4.99 37.15 0.19 1.15 16 23 O -0.35 -6.47 8.51 -35.23 -0.30 -6.77 16 24 H 0.02 0.68 7.33 -51.93 -0.38 0.30 16 25 H 0.03 0.96 7.37 -51.93 -0.38 0.57 16 26 H 0.01 0.19 7.18 -51.93 -0.37 -0.18 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 30 H 0.07 0.93 6.71 -51.93 -0.35 0.59 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.74 8.14 -51.94 -0.42 0.31 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.53 6.68 -51.93 -0.35 0.18 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.11 6.25 -51.93 -0.32 0.79 16 42 H 0.08 1.15 5.05 -51.93 -0.26 0.89 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -30.89 320.19 -7.90 -38.79 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.37 Total: -3.37 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 0.27 Total: -3.12 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.08 Total: -42.42 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.68 Total: -11.90 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.89 -7.90 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878042905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.967 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds